MD04G1204900.v1.1

Protein AUXIN RESPONSE

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29106688 .. 29109544
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1204900.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGTGACCATCACAGAGGAAGACGAAGACCAACACCGTCGAACCCGGAAACCGAAGCGGTCGTCGCCAGAAGAGATCAAGTCAACTCCACCACCAAAACCCACATCGCCGACGCCAAAACCACAGCAAAACGCCCAAAATCCATTTGCTTTTTGGTTCTACTTCACTCTCATAGTCTCTCTCGTCACCGTCTTCTTCATTTCTCTCTCCTCTCTCTCTCCACAGGACCCAAAGTCTTGGTTTTTGAGCCTTCCCGCCGCTCTCCGTCAGCACTACTCGAAGGGTCGCACCATAAAGGTACAAACTCATCCGAATCAAAGCCCGTTTGAAGTTTTTTATACTGAGAAAGGTTCTGTAGGATCGGAAAATGTAGTTATTGTTCATGGCCTGGGGCTTAGTTCTTACTCGTTTCGAAAAGTTGTTGAATCTTTCCGGTCCAAAGTGGCTCGTGCGGTTGCGTTTGATTTGCCCGGAAACGGGTTTTCGGACAAATCGGTGGTGGAGGTTGGAGAGGGGGAAAGTGGGATTTTAGGGAGATTTTGGAATGTGTATGGTGAAATTCAGGAAAAGGGTTTGTTTTGGGCATTTGATCAGATAATTGAAACAGGGCAGATTCCGTATGAAGAAATCGAAGCTCGGGTTTCTAAGCAGAAGGTTGTGAGGCCAATTGAAATGGGTCCTGATGAGATTGGTAAGGTGTTGGGGCAGGTAATTGAGACAACGGGTTTGGCCCCTGTGCATTTGGTGTTGCATGATTCAGCTTTGGGGATGGTTGCAAATTGGGTTTTGGAAAATGCGGGATCGGTGAGGAGTGTAACGCTCATTGATACCTCACCCAGATCGACAGGTGCTTTGCCTTTGTGGGTTTTTGGAGTGCCAATGATTAGGGAGTTTGTGCTGAGGTTTTCACATGCTTATACTTGGTTGATTAGGTTGAGTTGCTCTAGGGGGATTGATGTTTCGGATGTCAATGCGCATAGACTTCTTTTGAAGGGTAGGGATGGGACAAGAGCCATTGTTGGAATGGGAAAGAAGTTGAATCATAGCTTTGATATAGCACAATGGGGCGGTTCGGATGGATTGAAAGGTGTGCCAATGCAGGTGCTTTGGTCTAGCAGTTGGTCCAAGGAATGGAGTGAAGAGGGAAGCCGTGTTGCAAGTGCACTTCCACAGGCAAATTTTGTCACGCATTCAGGTGGGCGGTGGCCTCAGGAGGACGCAGCTGACGAGGTAGCTGAAAAGATTGCTTATTTCGTGTCCTCACTGCCTGCTACTGTCAGAAAGGTTGAGGAAGAGCCGATCCCCGAGCATATTCAGAAGATGCTTGATGAAGCAAAAAGTAGTGATCATCATCATCATCACCATGGCGATGGGCATGAGCACCATCACAGTCACGGAGCTAGTTATCCTGATGCGTACGGTCTTGGCCACGGTCATGGATGGGCAAGTTGA

Protein Analysis

484

Amino Acids

53.64

Weight (kDa)

6.47

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 124 - 279 7e-11 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 124 - 413 2.3e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011194)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1090
Acc16I TGCGCA 1 cut(s) 975
Acc36I ACCTGC 2 cut(s) 697, 1090
AccB7I CCANNNNNTGG 1 cut(s) 1131
AccBSI CCGCTC 1 cut(s) 260
AciI CCGC 7 cut(s) 58, 255, 258, 452, 797, 1068, 1201
AclWI GGATC 3 cut(s) 367, 808, 1294
AcoI YGGCCR 1 cut(s) 1426
AcsI RAATTY 2 cut(s) 558, 1177
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 2 cut(s) 300, 1418
AfiI CCNNNNNNNGG 3 cut(s) 476, 477, 1131
AgsI TTSAA 7 cut(s) 329, 425, 602, 671, 991, 1039, 1084
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 6 cut(s) 635, 761, 1047, 1223, 1235, 1400
AluI AGCT 6 cut(s) 635, 761, 1047, 1223, 1235, 1400
Alw21I GWGCWC 2 cut(s) 1165, 1383
Alw26I GTCTC 2 cut(s) 181, 710
Alw44I GTGCAC 1 cut(s) 1161
AlwI GGATC 3 cut(s) 367, 808, 1294
Ama87I CYCGRG 2 cut(s) 636, 1304
AoxI GGCC 5 cut(s) 385, 662, 729, 1205, 1426
ApaLI GTGCAC 1 cut(s) 1161
ApeKI GCWGC 1 cut(s) 1220
ApoI RAATTY 2 cut(s) 558, 1177
ArsI GACNNNNNNTTYG 6 cut(s) 47, 79, 709, 741, 835, 867
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 5 cut(s) 226, 435, 677, 730, 1122
AsuC2I CCSGG 2 cut(s) 46, 471
AsuHPI GGTGA 6 cut(s) 16, 178, 566, 817, 825, 1352
AsuII TTCGAA 1 cut(s) 412
AvaI CYCGRG 2 cut(s) 636, 1304
AvaII GGWCC 4 cut(s) 226, 435, 677, 1122
AxyI CCTNAGG 1 cut(s) 1209
BaeGI GKGCMC 1 cut(s) 1165
BalI TGGCCA 1 cut(s) 1428
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 3 cut(s) 27, 33, 184
Bbv12I GWGCWC 2 cut(s) 1165, 1383
BbvCI CCTCAGC 1 cut(s) 899
BbvI GCAGC 1 cut(s) 1232
BccI CCATC 7 cut(s) 17, 763, 995, 1070, 1364, 1392, 1434
BceAI ACGGC 1 cut(s) 1134
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 2 cut(s) 589, 1345
BcnI CCSGG 2 cut(s) 46, 471
BcoDI GTCTC 2 cut(s) 181, 710
BfaI CTAG 3 cut(s) 945, 1113, 1401
BfmI CTRYAG 1 cut(s) 354
BfuAI ACCTGC 2 cut(s) 697, 1090
BisI GCNGC 2 cut(s) 258, 1221
BlsI GCNGC 2 cut(s) 259, 1222
Bme1390I CCNGG 3 cut(s) 46, 389, 471
Bme18I GGWCC 4 cut(s) 226, 435, 677, 1122
BmeRI GACNNNNNGTC 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 636, 1304
BmgT120I GGNCC 5 cut(s) 226, 435, 677, 730, 1122
BmiI GGNNCC 3 cut(s) 228, 678, 732
BmrFI CCNGG 3 cut(s) 46, 389, 471
BmsI GCATC 2 cut(s) 1311, 1402
BpiI GAAGAC 3 cut(s) 27, 33, 184
Bpu10I CCTNAGC 1 cut(s) 899
Bpu14I TTCGAA 1 cut(s) 412
BpuMI CCSGG 2 cut(s) 46, 471
BsaBI GATNNNNATC 1 cut(s) 1350
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 388, 1125, 1363, 1429
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 477, 1131
Bse21I CCTNAGG 1 cut(s) 1209
Bse8I GATNNNNATC 1 cut(s) 1350
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 4 cut(s) 388, 1125, 1363, 1429
BseGI GGATG 6 cut(s) 307, 774, 970, 1006, 1081, 1445
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 3 cut(s) 476, 477, 1131
BseMII CTCAG 3 cut(s) 333, 890, 1223
BseRI GAGGAG 2 cut(s) 199, 823
BseSI GKGCMC 1 cut(s) 1165
BseXI GCAGC 1 cut(s) 1232
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 5 cut(s) 387, 664, 731, 1207, 1428
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 1165, 1383
BsiHKCI CYCGRG 2 cut(s) 636, 1304
BsiSI CCGG 3 cut(s) 46, 433, 471
BsiWI CGTACG 1 cut(s) 1416
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 3 cut(s) 476, 477, 1131
BsmAI GTCTC 2 cut(s) 181, 710
BsmFI GGGAC 1 cut(s) 1018
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 5 cut(s) 387, 664, 731, 1207, 1428
BsoBI CYCGRG 2 cut(s) 636, 1304
Bsp119I TTCGAA 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 1165, 1383
Bsp143I GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
Bsp19I CCATGG 1 cut(s) 1363
BspACI CCGC 7 cut(s) 58, 255, 258, 452, 797, 1068, 1201
BspANI GGCC 5 cut(s) 387, 664, 731, 1207, 1428
BspCNI CTCAG 3 cut(s) 334, 891, 1222
BspLI GGNNCC 3 cut(s) 228, 678, 732
BspMI ACCTGC 2 cut(s) 697, 1090
BspPI GGATC 3 cut(s) 367, 808, 1294
BspQI GCTCTTC 1 cut(s) 1287
BspT104I TTCGAA 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 260
BssECI CCNNGG 4 cut(s) 388, 1125, 1363, 1429
BssMI GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
BssNI GRCGYC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 1125, 1363
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 6 cut(s) 38, 190, 1276, 1391, 1421, 1433
Bst6I CTCTTC 3 cut(s) 66, 1134, 1287
BstACI GRCGYC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 1269
BstDEI CTNAG 5 cut(s) 342, 395, 645, 899, 1209
BstDSI CCRYGG 2 cut(s) 1363, 1429
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 6 cut(s) 307, 774, 970, 1006, 1081, 1445
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 7 cut(s) 78, 362, 592, 803, 842, 1302, 1348
BstMAI GTCTC 2 cut(s) 181, 710
BstMBI GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 914
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 3 cut(s) 44, 387, 469
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 1165
BstV1I GCAGC 1 cut(s) 1232
BstV2I GAAGAC 3 cut(s) 27, 33, 184
BstXI CCANNNNNNTGG 3 cut(s) 237, 1370, 1436
Bsu36I CCTNAGG 1 cut(s) 1209
BsuRI GGCC 5 cut(s) 387, 664, 731, 1207, 1428
BtgI CCRYGG 2 cut(s) 1363, 1429
BtgZI GCGATG 2 cut(s) 90, 1383
BtsCI GGATG 6 cut(s) 307, 774, 970, 1006, 1081, 1445
BtsI GCAGTG 1 cut(s) 1262
BtsIMutI CAGTG 1 cut(s) 1262
BveI ACCTGC 2 cut(s) 697, 1090
Cac8I GCNNGC 1 cut(s) 1269
CfoI GCGC 1 cut(s) 976
Cfr13I GGNCC 5 cut(s) 226, 435, 677, 730, 1122
CseI GACGC 2 cut(s) 121, 1226
Csp6I GTAC 2 cut(s) 299, 1417
CviAII CATG 6 cut(s) 383, 752, 911, 1364, 1376, 1436
CviQI GTAC 2 cut(s) 299, 1417
DdeI CTNAG 5 cut(s) 342, 395, 645, 899, 1209
DpnI GATC 7 cut(s) 77, 361, 591, 802, 841, 1301, 1347
DpnII GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
DriI GACNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 1426
Eam1104I CTCTTC 3 cut(s) 66, 1134, 1287
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 3 cut(s) 66, 1134, 1287
Eco130I CCWWGG 2 cut(s) 1125, 1363
Eco47I GGWCC 4 cut(s) 226, 435, 677, 1122
Eco81I CCTNAGG 1 cut(s) 1209
Eco88I CYCGRG 2 cut(s) 636, 1304
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 2 cut(s) 226, 677
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 1125, 1363
ErhI CCWWGG 2 cut(s) 1125, 1363
FaeI CATG 6 cut(s) 386, 755, 914, 1367, 1379, 1439
FaqI GGGAC 1 cut(s) 1018
FatI CATG 6 cut(s) 382, 751, 910, 1363, 1375, 1435
FauI CCCGC 2 cut(s) 262, 790
FbaI TGATCA 2 cut(s) 589, 1345
Fnu4HI GCNGC 2 cut(s) 258, 1221
FokI GGATG 5 cut(s) 294, 781, 977, 1013, 1088
Fsp4HI GCNGC 2 cut(s) 258, 1221
FspAI RTGCGCAY 1 cut(s) 975
FspBI CTAG 3 cut(s) 945, 1113, 1401
FspI TGCGCA 1 cut(s) 975
GlaI GCGC 1 cut(s) 975
GluI GCNGC 2 cut(s) 258, 1221
HaeIII GGCC 5 cut(s) 387, 664, 731, 1207, 1428
HapII CCGG 3 cut(s) 46, 433, 471
HgaI GACGC 2 cut(s) 121, 1226
HhaI GCGC 1 cut(s) 976
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 6 cut(s) 386, 755, 914, 1367, 1379, 1439
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 5 cut(s) 313, 425, 613, 755, 1039
HpaII CCGG 3 cut(s) 46, 433, 471
HphI GGTGA 6 cut(s) 16, 178, 566, 817, 825, 1352
Hpy166II GTNNAC 2 cut(s) 84, 1163
Hpy188I TCNGA 8 cut(s) 312, 364, 487, 594, 964, 1075, 1280, 1317
Hpy188III TCNNGA 4 cut(s) 563, 680, 1211, 1409
Hpy8I GTNNAC 2 cut(s) 84, 1163
Hpy99I CGWCG 3 cut(s) 42, 67, 115
HpyAV CCTTC 4 cut(s) 260, 274, 646, 985
HpyCH4III ACNGT 6 cut(s) 38, 190, 1276, 1391, 1421, 1433
HpyCH4V TGCA 6 cut(s) 739, 751, 776, 1099, 1157, 1163
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 5 cut(s) 342, 395, 645, 899, 1209
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 6 cut(s) 386, 755, 914, 1367, 1379, 1439
HspAI GCGC 1 cut(s) 974
Ksp22I TGATCA 2 cut(s) 589, 1345
Kzo9I GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
LguI GCTCTTC 1 cut(s) 1287
LmnI GCTCC 1 cut(s) 1397
Lsp1109I GCAGC 1 cut(s) 1232
LweI GCATC 2 cut(s) 1311, 1402
MaeI CTAG 3 cut(s) 945, 1113, 1401
MaeIII GTNAC 5 cut(s) 4, 184, 814, 1183, 1391
MalI GATC 7 cut(s) 77, 361, 591, 802, 841, 1301, 1347
MbiI CCGCTC 1 cut(s) 260
MboI GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
MboII GAAGA 9 cut(s) 32, 38, 83, 184, 187, 635, 1151, 1304, 1330
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 2 cut(s) 1165, 1383
MlsI TGGCCA 1 cut(s) 1428
MluCI AATT 6 cut(s) 558, 597, 666, 711, 778, 1177
MluNI TGGCCA 1 cut(s) 1428
MmeI TCCRAC 2 cut(s) 487, 1000
Mox20I TGGCCA 1 cut(s) 1428
MscI TGGCCA 1 cut(s) 1428
MslI CAYNNNNRTG 4 cut(s) 1194, 1362, 1368, 1434
Msp20I TGGCCA 1 cut(s) 1428
MspA1I CMGCKG 1 cut(s) 1223
MspI CCGG 3 cut(s) 46, 433, 471
MspR9I CCNGG 3 cut(s) 46, 389, 471
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 64
NciI CCSGG 2 cut(s) 46, 471
NcoI CCATGG 1 cut(s) 1363
NdeII GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
NlaIII CATG 6 cut(s) 386, 755, 914, 1367, 1379, 1439
NlaIV GGNNCC 3 cut(s) 228, 678, 732
NmuCI GTSAC 4 cut(s) 4, 184, 1183, 1391
NsbI TGCGCA 1 cut(s) 975
NspI RCATGY 1 cut(s) 914
NspV TTCGAA 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 1090
PciSI GCTCTTC 1 cut(s) 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 1224
PctI GAATGC 1 cut(s) 1189
PfeI GAWTC 5 cut(s) 313, 425, 613, 755, 1039
Pfl23II CGTACG 1 cut(s) 1416
PflMI CCANNNNNTGG 1 cut(s) 1131
PkrI GCNGC 2 cut(s) 259, 1222
PpuMI RGGWCCY 2 cut(s) 226, 677
Psp5II RGGWCCY 2 cut(s) 226, 677
Psp6I CCWGG 1 cut(s) 387
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 387
PspLI CGTACG 1 cut(s) 1416
PspN4I GGNNCC 3 cut(s) 228, 678, 732
PspPI GGNCC 5 cut(s) 226, 435, 677, 730, 1122
PspPPI RGGWCCY 2 cut(s) 226, 677
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PvuII CAGCTG 1 cut(s) 1223
RsaI GTAC 2 cut(s) 300, 1418
RsaNI GTAC 2 cut(s) 299, 1417
RseI CAYNNNNRTG 4 cut(s) 1194, 1362, 1368, 1434
SapI GCTCTTC 1 cut(s) 1287
SatI GCNGC 2 cut(s) 258, 1221
Sau3AI GATC 7 cut(s) 75, 359, 589, 800, 839, 1299, 1345
Sau96I GGNCC 5 cut(s) 226, 435, 677, 730, 1122
ScrFI CCNGG 3 cut(s) 46, 389, 471
SduI GDGCHC 2 cut(s) 1165, 1383
SfaNI GCATC 2 cut(s) 1311, 1402
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 412
SinI GGWCC 4 cut(s) 226, 435, 677, 1122
SmiMI CAYNNNNRTG 4 cut(s) 1194, 1362, 1368, 1434
Sse9I AATT 6 cut(s) 558, 597, 666, 711, 778, 1177
SsiI CCGC 7 cut(s) 58, 255, 258, 452, 797, 1068, 1201
SspMI CTAG 3 cut(s) 945, 1113, 1401
StyD4I CCNGG 3 cut(s) 44, 387, 469
StyI CCWWGG 2 cut(s) 1125, 1363
TaaI ACNGT 6 cut(s) 38, 190, 1276, 1391, 1421, 1433
TaqI TCGA 5 cut(s) 40, 278, 412, 630, 842
TasI AATT 6 cut(s) 558, 597, 666, 711, 778, 1177
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 5 cut(s) 313, 425, 613, 755, 1039
TscAI CASTG 1 cut(s) 1269
TseFI GTSAC 4 cut(s) 4, 184, 1183, 1391
TseI GCWGC 1 cut(s) 1220
Tsp45I GTSAC 4 cut(s) 4, 184, 1183, 1391
TspDTI ATGAA 4 cut(s) 187, 371, 636, 1344
TspGWI ACGGA 3 cut(s) 254, 606, 1410
TspRI CASTG 1 cut(s) 1269
Van91I CCANNNNNTGG 1 cut(s) 1131
VneI GTGCAC 1 cut(s) 1161
VpaK11BI GGWCC 4 cut(s) 226, 435, 677, 1122
XapI RAATTY 2 cut(s) 558, 1177
XceI RCATGY 1 cut(s) 914
XcmI CCANNNNNNNNNTGG 2 cut(s) 150, 1021
XspI CTAG 3 cut(s) 945, 1113, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.