Rw3G004960

Protein AUXIN RESPONSE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
4169673 .. 4172637
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004960.1

Sequence Viewer

Length: 1311 bp
ATGGTGATCATCACAGAGGAAGAAGACAACCAAAAACGAGACCCCAAACCCTCACAAGCACCAAACCAACCCACCGTTCAAAACAATCAAAACCCACTCCGTCGTCTCCGTCTCCGACTCCGACTCCGACACCATCAAAACCACCCCAAGAGGTTCAAAGCCCGTTCGCTTTCTGACCCAAAGTCTTGGTTTTTAAGCTTACCCGCATCGCTGCGTCAATTCTACTCCAAGGGTCGCACTATAAAGGTCCAGACCCACCCGGACCAATCCGCCTTTGAAGTTTTCACAGCTGAGAAAGGCGTTACAGAATCGGAGAAGGTTATAATTGTTCATGGGTTGGGTCTGAGTTCGTATTCTTTTCGCAAAGTAATTGAAGCCCTAGGTTCCAGAGGGGTTCATGTGGTGGCGTTTGATTTGCCCGGAAATGGGTTTTCGGATAAATCGACGGTGGAGATTGGGGAGAACCCAGGTGGGCTTCTTGGGAGGTTTTCGTTTGTTGTGAGTGAAATTCAAGAAAAGGGTTTGTTTTGGGCTTTTGATGAGATTGTGGCAACTGGGCAGGTGCCCTTTGAGGAGATAGAGGCTAGGGCATCGAAGCGAAAAGTTGTGAAGCCCATTGAGTTGGGCCCTGAGGAGGTTGGGAAGGTGTTGGGGCAAGTGATTGAGACAATGGGGTTGGCTCCTGTGCATTTGGTTTTGCATGATTCGGCTTTGGGGATGGTTTCGAATTGGGTTTTGGAGAATGTGCAGTCTGTGAGGAGTGTGACACTGATTGATACTGGGGCTAAATCGGCAGGGGCTTTGCCTTTGTGGGTTTTGGAAGTGCCATTGAGTTCTTTTGAAGGGGAGGGATGGAACGAAGGCATTGTTGGAATGGGGAAGAAGTTGAATCGTAGCTTTGATATTGCAGAATGGGGTGGTTCGGATGGACTGAAAGGAGTGCCAATGCAATTGCTTTGGTCTGAACATTGGTCTAAGGAATGGAGTGAAGAGGGGCGCCGAATTGCTAATGCACTTCCAAAGGCGAACTTTGTCACCCATTCTGGTGGACGGTGGCCTCAGGAGGATGCAGCCGATGAAGTAGCTGGACACATTGCTAATTTTGTAACCTCATTACCTGCTACTGTCAGAAAGGTCGCCGAAGAGCCGATCCCTGAGCATATTCAGACGTTGCTTGATGAGGCCGAACAGACTGGTCATGGGCATCTTCATGGTCATGCTGGGCATGAAGAGCATAGTCATGGACATGTTCATGGGGCTGGAGCTGGTTATCCTGATCCGTACGGCCTTGGTCATGGCCACGGATGGTGA

Protein Analysis

436

Amino Acids

47.96

Weight (kDa)

6.22

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 107 - 260 9.6e-13 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 107 - 307 3.5e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011194)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 2 cut(s) 550, 1126
AccB1I GGYRCC 2 cut(s) 562, 996
AciI CCGC 2 cut(s) 204, 270
AclWI GGATC 2 cut(s) 1144, 1271
AcoI YGGCCR 1 cut(s) 1297
AcsI RAATTY 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 997
AfaI GTAC 1 cut(s) 1283
AfiI CCNNNNNNNGG 3 cut(s) 425, 426, 634
AflIII ACRYGT 1 cut(s) 1246
AgsI TTSAA 7 cut(s) 80, 157, 278, 374, 512, 842, 889
AhdI GACNNNNNGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 466
AjuI GAANNNNNNNTTGG 6 cut(s) 60, 92, 719, 751, 852, 884
AluBI AGCT 5 cut(s) 198, 290, 897, 1085, 1265
AluI AGCT 5 cut(s) 198, 290, 897, 1085, 1265
Alw26I GTCTC 4 cut(s) 33, 110, 116, 659
AlwI GGATC 2 cut(s) 1144, 1271
AoxI GGCC 5 cut(s) 625, 1055, 1182, 1285, 1297
ApaI GGGCCC 1 cut(s) 629
ApeKI GCWGC 2 cut(s) 211, 1070
ApoI RAATTY 1 cut(s) 507
AspA2I CCTAGG 1 cut(s) 379
AspLEI GCGC 1 cut(s) 999
AspS9I GGNCC 4 cut(s) 247, 262, 625, 626
AsuC2I CCSGG 2 cut(s) 260, 420
AsuHPI GGTGA 2 cut(s) 16, 1027
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 2 cut(s) 247, 262
AvrII CCTAGG 1 cut(s) 379
AxyI CCTNAGG 2 cut(s) 630, 1059
BaeGI GKGCMC 2 cut(s) 567, 629
BalI TGGCCA 1 cut(s) 1299
BanI GGYRCC 2 cut(s) 562, 996
BanII GRGCYC 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 198, 1082
BccI CCATC 5 cut(s) 141, 712, 846, 920, 1299
BceAI ACGGC 1 cut(s) 1300
BciT130I CCWGG 1 cut(s) 468
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 2 cut(s) 260, 420
BcoDI GTCTC 4 cut(s) 33, 110, 116, 659
BfaI CTAG 2 cut(s) 380, 585
BfoI RGCGCY 1 cut(s) 1000
BfuAI ACCTGC 2 cut(s) 550, 1126
BisI GCNGC 2 cut(s) 212, 1071
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 2 cut(s) 213, 1072
Bme1390I CCNGG 3 cut(s) 260, 420, 468
Bme18I GGWCC 2 cut(s) 247, 262
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgT120I GGNCC 4 cut(s) 247, 262, 625, 626
BmiI GGNNCC 5 cut(s) 385, 564, 627, 681, 998
BmrFI CCNGG 3 cut(s) 260, 420, 468
BmrI ACTGGG 2 cut(s) 564, 789
BmsI GCATC 4 cut(s) 215, 599, 1057, 1213
BmuI ACTGGG 2 cut(s) 564, 789
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 1281
Bpu10I CCTNAGC 1 cut(s) 1155
Bpu14I TTCGAA 1 cut(s) 725
BpuMI CCSGG 2 cut(s) 260, 420
BsaHI GRCGYC 1 cut(s) 997
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 228, 379, 466, 1288, 1300
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 426, 634
Bse1I ACTGG 3 cut(s) 559, 784, 1198
Bse21I CCTNAGG 2 cut(s) 630, 1059
Bse3DI GCAATG 1 cut(s) 1092
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 5 cut(s) 228, 379, 466, 1288, 1300
BseGI GGATG 5 cut(s) 723, 857, 931, 1072, 1310
BseLI CCNNNNNNNGG 3 cut(s) 425, 426, 634
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 5 cut(s) 282, 335, 621, 1073, 1146
BseNI ACTGG 3 cut(s) 559, 784, 1198
BseRI GAGGAG 3 cut(s) 587, 647, 772
BseSI GKGCMC 2 cut(s) 567, 629
BseXI GCAGC 2 cut(s) 198, 1082
BseYI CCCAGC 1 cut(s) 1220
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 5 cut(s) 627, 1057, 1184, 1287, 1299
BshNI GGYRCC 2 cut(s) 562, 996
BsiSI CCGG 2 cut(s) 260, 420
BsiWI CGTACG 1 cut(s) 1281
BslI CCNNNNNNNGG 3 cut(s) 425, 426, 634
BsmAI GTCTC 4 cut(s) 33, 110, 116, 659
BsmBI CGTCTC 2 cut(s) 110, 116
BsnI GGCC 5 cut(s) 627, 1057, 1184, 1287, 1299
Bso31I GGTCTC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 725
Bsp120I GGGCCC 1 cut(s) 625
Bsp1286I GDGCHC 2 cut(s) 567, 629
Bsp143I GATC 3 cut(s) 6, 1149, 1276
BspACI CCGC 2 cut(s) 204, 270
BspANI GGCC 5 cut(s) 627, 1057, 1184, 1287, 1299
BspCNI CTCAG 5 cut(s) 283, 336, 622, 1072, 1147
BspLI GGNNCC 5 cut(s) 385, 564, 627, 681, 998
BspMI ACCTGC 2 cut(s) 550, 1126
BspPI GGATC 2 cut(s) 1144, 1271
BspQI GCTCTTC 2 cut(s) 1137, 1224
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 2 cut(s) 562, 996
BspTNI GGTCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 3 cut(s) 559, 784, 1198
BssECI CCNNGG 5 cut(s) 228, 379, 466, 1288, 1300
BssMI GATC 3 cut(s) 6, 1149, 1276
BssNI GRCGYC 1 cut(s) 997
BssT1I CCWWGG 3 cut(s) 228, 379, 1288
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 4 cut(s) 76, 448, 1053, 1126
Bst6I CTCTTC 3 cut(s) 984, 1137, 1224
BstACI GRCGYC 1 cut(s) 997
BstBI TTCGAA 1 cut(s) 725
BstDEI CTNAG 6 cut(s) 291, 344, 630, 975, 1059, 1155
BstDSI CCRYGG 1 cut(s) 1300
BstF5I GGATG 5 cut(s) 723, 857, 931, 1072, 1310
BstH2I RGCGCY 1 cut(s) 1000
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 3 cut(s) 9, 1152, 1279
BstMAI GTCTC 4 cut(s) 33, 110, 116, 659
BstMBI GATC 3 cut(s) 6, 1149, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 791, 1231
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 1250
BstSCI CCNGG 3 cut(s) 258, 418, 466
BstSLI GKGCMC 2 cut(s) 567, 629
BstV1I GCAGC 2 cut(s) 198, 1082
BstV2I GAAGAC 1 cut(s) 30
BstXI CCANNNNNNTGG 3 cut(s) 186, 622, 1046
Bsu36I CCTNAGG 2 cut(s) 630, 1059
BsuRI GGCC 5 cut(s) 627, 1057, 1184, 1287, 1299
BtgI CCRYGG 1 cut(s) 1300
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 5 cut(s) 723, 857, 931, 1072, 1310
BtsIMutI CAGTG 1 cut(s) 767
BveI ACCTGC 2 cut(s) 550, 1126
CfoI GCGC 1 cut(s) 999
Cfr13I GGNCC 4 cut(s) 247, 262, 625, 626
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 1282
CviQI GTAC 1 cut(s) 1282
DdeI CTNAG 6 cut(s) 291, 344, 630, 975, 1059, 1155
DinI GGCGCC 1 cut(s) 998
DpnI GATC 3 cut(s) 8, 1151, 1278
DpnII GATC 3 cut(s) 6, 1149, 1276
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 1297
Eam1104I CTCTTC 3 cut(s) 984, 1137, 1224
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 3 cut(s) 984, 1137, 1224
EciI GGCGGA 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 228, 379, 1288
Eco24I GRGCYC 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 247, 262
Eco81I CCTNAGG 2 cut(s) 630, 1059
EcoO109I RGGNCCY 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 3 cut(s) 228, 379, 1288
EcoT38I GRGCYC 1 cut(s) 629
EgeI GGCGCC 1 cut(s) 998
EheI GGCGCC 1 cut(s) 998
ErhI CCWWGG 3 cut(s) 228, 379, 1288
Esp3I CGTCTC 2 cut(s) 110, 116
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 212, 1071
FokI GGATG 4 cut(s) 730, 864, 938, 1079
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 2 cut(s) 212, 1071
FspBI CTAG 2 cut(s) 380, 585
GlaI GCGC 1 cut(s) 998
GluI GCNGC 2 cut(s) 212, 1071
GsaI CCCAGC 1 cut(s) 1224
GsuI CTGGAG 1 cut(s) 1281
HaeII RGCGCY 1 cut(s) 1000
HaeIII GGCC 5 cut(s) 627, 1057, 1184, 1287, 1299
HapII CCGG 2 cut(s) 260, 420
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 999
Hin1I GRCGYC 1 cut(s) 997
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HindIII AAGCTT 1 cut(s) 196
HinfI GANTC 5 cut(s) 117, 123, 308, 704, 889
HpaII CCGG 2 cut(s) 260, 420
HphI GGTGA 2 cut(s) 16, 1027
Hpy166II GTNNAC 1 cut(s) 1049
Hpy188III TCNNGA 5 cut(s) 250, 387, 512, 1061, 1274
Hpy8I GTNNAC 1 cut(s) 1049
Hpy99I CGWCG 2 cut(s) 105, 448
HpyAV CCTTC 4 cut(s) 310, 637, 836, 854
HpyCH4III ACNGT 4 cut(s) 76, 448, 1053, 1126
HpyCH4IV ACGT 1 cut(s) 1169
HpyCH4V TGCA 7 cut(s) 688, 700, 748, 908, 949, 1013, 1070
HpyF10VI GCNNNNNNNGC 2 cut(s) 791, 1231
HpyF3I CTNAG 6 cut(s) 291, 344, 630, 975, 1059, 1155
HpySE526I ACGT 1 cut(s) 1169
Hsp92I GRCGYC 1 cut(s) 997
HspAI GCGC 1 cut(s) 997
KasI GGCGCC 1 cut(s) 996
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 3 cut(s) 6, 1149, 1276
LguI GCTCTTC 2 cut(s) 1137, 1224
LmnI GCTCC 2 cut(s) 685, 1262
Lsp1109I GCAGC 2 cut(s) 198, 1082
LweI GCATC 4 cut(s) 215, 599, 1057, 1213
MaeI CTAG 2 cut(s) 380, 585
MaeII ACGT 1 cut(s) 1169
MaeIII GTNAC 4 cut(s) 301, 763, 1033, 1105
MalI GATC 3 cut(s) 8, 1151, 1278
MboI GATC 3 cut(s) 6, 1149, 1276
MboII GAAGA 7 cut(s) 32, 35, 892, 1001, 1154, 1199, 1241
MfeI CAATTG 1 cut(s) 950
MhlI GDGCHC 2 cut(s) 567, 629
MlsI TGGCCA 1 cut(s) 1299
MluCI AATT 8 cut(s) 218, 324, 369, 507, 727, 950, 1002, 1099
MluNI TGGCCA 1 cut(s) 1299
Mly113I GGCGCC 1 cut(s) 997
MlyI GAGTC 2 cut(s) 111, 117
MmeI TCCRAC 4 cut(s) 139, 145, 151, 850
Mox20I TGGCCA 1 cut(s) 1299
MscI TGGCCA 1 cut(s) 1299
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 6 cut(s) 1044, 1209, 1215, 1239, 1245, 1251
Msp20I TGGCCA 1 cut(s) 1299
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 260, 420
MspR9I CCNGG 3 cut(s) 260, 420, 468
MunI CAATTG 1 cut(s) 950
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 791, 1231
NarI GGCGCC 1 cut(s) 997
NciI CCSGG 2 cut(s) 260, 420
NdeII GATC 3 cut(s) 6, 1149, 1276
NlaIV GGNNCC 5 cut(s) 385, 564, 627, 681, 998
NmuCI GTSAC 2 cut(s) 763, 1033
NspI RCATGY 1 cut(s) 1250
NspV TTCGAA 1 cut(s) 725
PaqCI CACCTGC 1 cut(s) 550
PciI ACATGT 1 cut(s) 1246
PciSI GCTCTTC 2 cut(s) 1137, 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PfeI GAWTC 3 cut(s) 308, 704, 889
Pfl23II CGTACG 1 cut(s) 1281
PkrI GCNGC 2 cut(s) 213, 1072
PleI GAGTC 2 cut(s) 111, 117
PluTI GGCGCC 1 cut(s) 1000
PpsI GAGTC 2 cut(s) 111, 117
PscI ACATGT 1 cut(s) 1246
PsiI TTATAA 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 1220
PspGI CCWGG 1 cut(s) 466
PspLI CGTACG 1 cut(s) 1281
PspN4I GGNNCC 5 cut(s) 385, 564, 627, 681, 998
PspOMI GGGCCC 1 cut(s) 625
PspPI GGNCC 4 cut(s) 247, 262, 625, 626
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 1283
RsaNI GTAC 1 cut(s) 1282
RseI CAYNNNNRTG 6 cut(s) 1044, 1209, 1215, 1239, 1245, 1251
SapI GCTCTTC 2 cut(s) 1137, 1224
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 212, 1071
Sau3AI GATC 3 cut(s) 6, 1149, 1276
Sau96I GGNCC 4 cut(s) 247, 262, 625, 626
SchI GAGTC 2 cut(s) 111, 117
ScrFI CCNGG 3 cut(s) 260, 420, 468
SduI GDGCHC 2 cut(s) 567, 629
SfaNI GCATC 4 cut(s) 215, 599, 1057, 1213
SfoI GGCGCC 1 cut(s) 998
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 2 cut(s) 247, 262
SmiMI CAYNNNNRTG 6 cut(s) 1044, 1209, 1215, 1239, 1245, 1251
Sse9I AATT 8 cut(s) 218, 324, 369, 507, 727, 950, 1002, 1099
SsiI CCGC 2 cut(s) 204, 270
SspDI GGCGCC 1 cut(s) 996
SspMI CTAG 2 cut(s) 380, 585
StyD4I CCNGG 3 cut(s) 258, 418, 466
StyI CCWWGG 3 cut(s) 228, 379, 1288
TaaI ACNGT 4 cut(s) 76, 448, 1053, 1126
TaiI ACGT 1 cut(s) 1172
TaqI TCGA 3 cut(s) 443, 593, 725
TasI AATT 8 cut(s) 218, 324, 369, 507, 727, 950, 1002, 1099
TfiI GAWTC 3 cut(s) 308, 704, 889
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 2 cut(s) 763, 1033
TseI GCWGC 2 cut(s) 211, 1070
Tsp45I GTSAC 2 cut(s) 763, 1033
TspDTI ATGAA 6 cut(s) 320, 386, 1092, 1199, 1241, 1242
TspGWI ACGGA 3 cut(s) 89, 98, 1269
TspRI CASTG 1 cut(s) 774
VpaK11BI GGWCC 2 cut(s) 247, 262
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 1250
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 2 cut(s) 380, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.