MD12G1218600.v1.1

Protein AUXIN RESPONSE

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
29610861 .. 29613688
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1218600.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGCTCCCTCTCTCTCTCTCTCTCTCTCTTACTTTCCCACTTTACTTTTCAGTTCTAATCCGCAGATCAAAAAACCAACCGAAATCCCAGTTCAATTCGAACTCCCCATTTCCCGAAAGCTTCAAGCTTTTTTCAATGGTGACCATCACAGAGGAAAACGAAGGCCAACACCGCCGTGACCCGAAACCGAAACCGAAACCGAAACGGTCGTCACCAGAAGAGATCAAGCCAACTCCACCACCAAAACGCACTTCGCCGCCGCCAAAACCACCGCAAAACTCTCAAAATCCATTCGCTTTCTGGTTCTACTGCACTCTCACTGTCTCTCTCGTCACCGTCGTCTTCATTTCTCTCTCCTCTCTTTCTCCGCAAGACCCAAAGTCTTGGTTTTTGAGCCTGCCAGCCGCTCTCCGCCAGCACTACTCCAAGGGTCGCACCATAAAGGTACAAACTCACCCGAATCAGAACCCGGTTGAAGTTTTTTGTACTGAGAAAGGGTCTGTGGGATCGGAAAATGTTGTTATTGTTCATGGGCTGGGACTCAGCTCCTACTCTTTTCGAAAAGTTGTTAAATTTTTAGGGTCCAAAGGGGTTCGTGCGGTTGCGTTTGATTTGCCCGGAAACGGGTTTTCGGACAAATCGGTGGTGGAGGTTGGAGAGGAGGAAACTGGGATTTTAGGGAGGTTTTGGAATGTATATGGTGAAATTCAGGAAAAGGGTTTGTTTTGGGCATTTGATCGGATAATCGAAACAGGGCAGATGCCGTATGAGGAAATCGAAGCTCGGGTTTCGAAACAGAAGGTTGTGAAGCCGATTGAAATGGGTCCTGAGGAGATTGGTAAGGTGGTGGGGCAAGTAATTGAGACGACAGGTTTAGCTCCTGTGCATTTGGTGTTGCATGATTCAGCTTTGGGGATGGTTGCCAATTGGGTTTTGGAAAATGTGGGATCGGTGAGGAGTGTAACGCTTATTGATACCTCACCCAGATCGACGGGTGCTTTGCCTTTGTGGGTTTTGGGAGTGCCAATGATTAGGGAGTTTGTGCTGAGGTTTTCACATGCTTATGCTTGGTTGGTTAAAATGAGTTGCTCAAGGGGGATTGATGTTTCGGATGTCGATGCACATAGACTTCTGTTGAAGGGTAGGGATGGGACGAGGGCCATTGTTGGGATGGGAAAGAAGTTGAATCATAGCTTTGATATAGCAGAATGGGGGGGTTCGGATGGATTGAAAGGTGTGCCAATGCAGGTGCTTTGGTCTAGCAGTTGGTCCAAGGAATGGAGTGAAGAGGGAAACCGTGTTGCAAGTGCACTTCCACAGGCAACTTTTGTCACCCATTCCGGTGGGCGGTGGCCTCAGGAGGACGCAGCTGATGAGGTAGCTGAAAATATTTCTTATTTTGTGTCCTCATTGCCTGCAACTGTCAGAAAGGTTGAAGAAGAGCCGATCCCCGAGCATATTCAGAAAATGCTCGATGAAGCAAAAGGCAGCGACCATCATCACCATGACCATGGTGACGGGCATGACCACCATCATAGTCATGGAGCTAGTTATCCTGATGCGTACGGTCTTGGCCATAGCCATGGATTGGCAAGTTGA

Protein Analysis

533

Amino Acids

58.9

Weight (kDa)

6.92

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 173 - 329 8.3e-11 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 173 - 462 2.1e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011194)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1237
Acc36I ACCTGC 1 cut(s) 1237
AccB7I CCANNNNNTGG 2 cut(s) 1278, 1588
AccBSI CCGCTC 1 cut(s) 407
AclWI GGATC 3 cut(s) 514, 955, 1441
AcoI YGGCCR 1 cut(s) 1573
AcsI RAATTY 2 cut(s) 572, 705
AfaI GTAC 3 cut(s) 447, 487, 1565
AfiI CCNNNNNNNGG 6 cut(s) 623, 624, 1167, 1278, 1347, 1588
AgsI TTSAA 9 cut(s) 94, 124, 135, 476, 818, 1138, 1186, 1231, 1436
AhdI GACNNNNNGTC 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AleI CACNNNNGTG 1 cut(s) 174
Alw21I GWGCWC 1 cut(s) 1312
Alw26I GTCTC 2 cut(s) 328, 857
Alw44I GTGCAC 1 cut(s) 1308
AlwI GGATC 3 cut(s) 514, 955, 1441
Ama87I CYCGRG 2 cut(s) 783, 1451
AoxI GGCC 4 cut(s) 163, 1158, 1352, 1573
ApaLI GTGCAC 1 cut(s) 1308
ApeKI GCWGC 2 cut(s) 1367, 1488
ApoI RAATTY 2 cut(s) 572, 705
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 982, 1014
AspS9I GGNCC 4 cut(s) 582, 824, 1158, 1269
AsuC2I CCSGG 2 cut(s) 470, 618
AsuII TTCGAA 3 cut(s) 98, 559, 791
AvaI CYCGRG 2 cut(s) 783, 1451
AvaII GGWCC 3 cut(s) 582, 824, 1269
AxyI CCTNAGG 2 cut(s) 828, 1356
BaeGI GKGCMC 1 cut(s) 1312
BalI TGGCCA 1 cut(s) 1575
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 1312
BbvCI CCTCAGC 1 cut(s) 1046
BbvI GCAGC 2 cut(s) 1379, 1500
BccI CCATC 7 cut(s) 152, 910, 1142, 1165, 1217, 1503, 1539
BceAI ACGGC 2 cut(s) 159, 748
BcnI CCSGG 2 cut(s) 470, 618
BcoDI GTCTC 2 cut(s) 328, 857
BfaI CTAG 2 cut(s) 1260, 1548
BfuAI ACCTGC 1 cut(s) 1237
BisI GCNGC 5 cut(s) 257, 260, 405, 1368, 1489
BlsI GCNGC 5 cut(s) 258, 261, 406, 1369, 1490
Bme1390I CCNGG 2 cut(s) 470, 618
Bme18I GGWCC 3 cut(s) 582, 824, 1269
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 2 cut(s) 783, 1451
BmgT120I GGNCC 4 cut(s) 582, 824, 1158, 1269
BmiI GGNNCC 2 cut(s) 583, 825
BmrFI CCNGG 2 cut(s) 470, 618
BmrI ACTGGG 2 cut(s) 82, 678
BmsI GCATC 3 cut(s) 750, 1108, 1549
BmuI ACTGGG 2 cut(s) 82, 678
BpiI GAAGAC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 1046
Bpu14I TTCGAA 3 cut(s) 98, 559, 791
BpuEI CTTGAG 1 cut(s) 1075
BpuMI CCSGG 2 cut(s) 470, 618
BsaJI CCNNGG 4 cut(s) 426, 1272, 1510, 1582
BsaWI WCCGGW 1 cut(s) 1340
Bsc4I CCNNNNNNNGG 6 cut(s) 623, 624, 1167, 1278, 1347, 1588
Bse1I ACTGG 2 cut(s) 88, 673
Bse21I CCTNAGG 2 cut(s) 828, 1356
Bse3DI GCAATG 1 cut(s) 1409
BseDI CCNNGG 4 cut(s) 426, 1272, 1510, 1582
BseGI GGATG 5 cut(s) 921, 1117, 1153, 1176, 1228
BseLI CCNNNNNNNGG 6 cut(s) 623, 624, 1167, 1278, 1347, 1588
BseMI GCAATG 1 cut(s) 1409
BseMII CTCAG 5 cut(s) 480, 556, 819, 1037, 1370
BseNI ACTGG 2 cut(s) 88, 673
BseRI GAGGAG 4 cut(s) 346, 674, 845, 970
BseSI GKGCMC 1 cut(s) 1312
BseXI GCAGC 2 cut(s) 1379, 1500
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 4 cut(s) 165, 1160, 1354, 1575
BsiEI CGRYCG 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 1312
BsiHKCI CYCGRG 2 cut(s) 783, 1451
BsiSI CCGG 3 cut(s) 470, 618, 1341
BsiWI CGTACG 1 cut(s) 1563
BslFI GGGAC 2 cut(s) 552, 1165
BslI CCNNNNNNNGG 6 cut(s) 623, 624, 1167, 1278, 1347, 1588
BsmAI GTCTC 2 cut(s) 328, 857
BsmBI CGTCTC 1 cut(s) 857
BsmFI GGGAC 2 cut(s) 552, 1165
BsnI GGCC 4 cut(s) 165, 1160, 1354, 1575
BsoBI CYCGRG 2 cut(s) 783, 1451
Bsp119I TTCGAA 3 cut(s) 98, 559, 791
Bsp1286I GDGCHC 1 cut(s) 1312
Bsp143I GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
Bsp19I CCATGG 2 cut(s) 1510, 1582
BspANI GGCC 4 cut(s) 165, 1160, 1354, 1575
BspCNI CTCAG 5 cut(s) 481, 555, 820, 1038, 1369
BspLI GGNNCC 2 cut(s) 583, 825
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 3 cut(s) 514, 955, 1441
BspQI GCTCTTC 1 cut(s) 1434
BspT104I TTCGAA 3 cut(s) 98, 559, 791
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 1409
BsrI ACTGG 2 cut(s) 88, 673
BssECI CCNNGG 4 cut(s) 426, 1272, 1510, 1582
BssMI GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
BssT1I CCWWGG 4 cut(s) 426, 1272, 1510, 1582
Bst4CI ACNGT 6 cut(s) 207, 322, 337, 1298, 1423, 1568
Bst6I CTCTTC 3 cut(s) 213, 1281, 1434
BstBI TTCGAA 3 cut(s) 98, 559, 791
BstC8I GCNNGC 4 cut(s) 398, 402, 416, 1416
BstDEI CTNAG 5 cut(s) 489, 542, 828, 1046, 1356
BstDSI CCRYGG 2 cut(s) 1510, 1582
BstEII GGTNACC 1 cut(s) 139
BstF5I GGATG 5 cut(s) 921, 1117, 1153, 1176, 1228
BstKTI GATC 7 cut(s) 68, 225, 509, 739, 950, 989, 1449
BstMAI GTCTC 2 cut(s) 328, 857
BstMBI GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 1061
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 468, 616
BstSLI GKGCMC 1 cut(s) 1312
BstV1I GCAGC 2 cut(s) 1379, 1500
BstV2I GAAGAC 1 cut(s) 334
BstXI CCANNNNNNTGG 4 cut(s) 384, 1343, 1511, 1583
Bsu36I CCTNAGG 2 cut(s) 828, 1356
BsuRI GGCC 4 cut(s) 165, 1160, 1354, 1575
BtgI CCRYGG 2 cut(s) 1510, 1582
BtsCI GGATG 5 cut(s) 921, 1117, 1153, 1176, 1228
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 4 cut(s) 398, 402, 416, 1416
Cfr13I GGNCC 4 cut(s) 582, 824, 1158, 1269
CseI GACGC 1 cut(s) 1373
Csp6I GTAC 3 cut(s) 446, 486, 1564
CviAII CATG 8 cut(s) 530, 899, 1058, 1505, 1511, 1523, 1541, 1583
CviQI GTAC 3 cut(s) 446, 486, 1564
DdeI CTNAG 5 cut(s) 489, 542, 828, 1046, 1356
DpnI GATC 7 cut(s) 67, 224, 508, 738, 949, 988, 1448
DpnII GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 1573
Eam1104I CTCTTC 3 cut(s) 213, 1281, 1434
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 3 cut(s) 213, 1281, 1434
EciI GGCGGA 1 cut(s) 401
Eco130I CCWWGG 4 cut(s) 426, 1272, 1510, 1582
Eco47I GGWCC 3 cut(s) 582, 824, 1269
Eco81I CCTNAGG 2 cut(s) 828, 1356
Eco88I CYCGRG 2 cut(s) 783, 1451
Eco91I GGTNACC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 824
EcoO65I GGTNACC 1 cut(s) 139
EcoT14I CCWWGG 4 cut(s) 426, 1272, 1510, 1582
ErhI CCWWGG 4 cut(s) 426, 1272, 1510, 1582
Esp3I CGTCTC 1 cut(s) 857
FaeI CATG 8 cut(s) 533, 902, 1061, 1508, 1514, 1526, 1544, 1586
FaqI GGGAC 2 cut(s) 552, 1165
FatI CATG 8 cut(s) 529, 898, 1057, 1504, 1510, 1522, 1540, 1582
Fnu4HI GCNGC 5 cut(s) 257, 260, 405, 1368, 1489
FokI GGATG 5 cut(s) 928, 1124, 1160, 1183, 1235
Fsp4HI GCNGC 5 cut(s) 257, 260, 405, 1368, 1489
FspBI CTAG 2 cut(s) 1260, 1548
GluI GCNGC 5 cut(s) 257, 260, 405, 1368, 1489
GsaI CCCAGC 1 cut(s) 539
HaeIII GGCC 4 cut(s) 165, 1160, 1354, 1575
HapII CCGG 3 cut(s) 470, 618, 1341
HgaI GACGC 1 cut(s) 1373
Hin1II CATG 8 cut(s) 533, 902, 1061, 1508, 1514, 1526, 1544, 1586
HindIII AAGCTT 2 cut(s) 118, 125
HinfI GANTC 4 cut(s) 460, 540, 902, 1186
HpaII CCGG 3 cut(s) 470, 618, 1341
Hpy166II GTNNAC 1 cut(s) 1310
Hpy188I TCNGA 8 cut(s) 465, 511, 634, 741, 1111, 1222, 1427, 1464
Hpy188III TCNNGA 5 cut(s) 113, 710, 827, 1358, 1556
Hpy8I GTNNAC 1 cut(s) 1310
Hpy99I CGWCG 2 cut(s) 341, 994
HpyAV CCTTC 3 cut(s) 155, 793, 1132
HpyCH4III ACNGT 6 cut(s) 207, 322, 337, 1298, 1423, 1568
HpyCH4V TGCA 8 cut(s) 312, 886, 898, 1121, 1246, 1304, 1310, 1418
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 5 cut(s) 489, 542, 828, 1046, 1356
Hsp92II CATG 8 cut(s) 533, 902, 1061, 1508, 1514, 1526, 1544, 1586
Kzo9I GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
LguI GCTCTTC 1 cut(s) 1434
LmnI GCTCC 4 cut(s) 9, 551, 883, 1544
Lsp1109I GCAGC 2 cut(s) 1379, 1500
LweI GCATC 3 cut(s) 750, 1108, 1549
MaeI CTAG 2 cut(s) 1260, 1548
MaeIII GTNAC 7 cut(s) 139, 176, 210, 331, 961, 1330, 1514
MalI GATC 7 cut(s) 67, 224, 508, 738, 949, 988, 1448
MbiI CCGCTC 1 cut(s) 407
MboI GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
MboII GAAGA 5 cut(s) 230, 334, 1298, 1448, 1451
MfeI CAATTG 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 1312
MlsI TGGCCA 1 cut(s) 1575
MluCI AATT 5 cut(s) 94, 572, 705, 858, 925
MluNI TGGCCA 1 cut(s) 1575
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 1 cut(s) 634
Mox20I TGGCCA 1 cut(s) 1575
MscI TGGCCA 1 cut(s) 1575
MseI TTAA 2 cut(s) 570, 1077
MslI CAYNNNNRTG 7 cut(s) 174, 1062, 1341, 1503, 1509, 1539, 1581
Msp20I TGGCCA 1 cut(s) 1575
MspA1I CMGCKG 1 cut(s) 1370
MspI CCGG 3 cut(s) 470, 618, 1341
MspR9I CCNGG 2 cut(s) 470, 618
MunI CAATTG 1 cut(s) 925
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 2 cut(s) 470, 618
NcoI CCATGG 2 cut(s) 1510, 1582
NdeII GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
NlaIII CATG 8 cut(s) 533, 902, 1061, 1508, 1514, 1526, 1544, 1586
NlaIV GGNNCC 2 cut(s) 583, 825
NmuCI GTSAC 6 cut(s) 139, 176, 210, 331, 1330, 1514
NspI RCATGY 1 cut(s) 1061
NspV TTCGAA 3 cut(s) 98, 559, 791
OliI CACNNNNGTG 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 1237
PciSI GCTCTTC 1 cut(s) 1434
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 3 cut(s) 460, 902, 1186
Pfl23II CGTACG 1 cut(s) 1563
PflMI CCANNNNNTGG 2 cut(s) 1278, 1588
PkrI GCNGC 5 cut(s) 258, 261, 406, 1369, 1490
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 1 cut(s) 824
Psp5II RGGWCCY 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 535
PspLI CGTACG 1 cut(s) 1563
PspN4I GGNNCC 2 cut(s) 583, 825
PspPI GGNCC 4 cut(s) 582, 824, 1158, 1269
PspPPI RGGWCCY 1 cut(s) 824
PvuII CAGCTG 1 cut(s) 1370
RsaI GTAC 3 cut(s) 447, 487, 1565
RsaNI GTAC 3 cut(s) 446, 486, 1564
RseI CAYNNNNRTG 7 cut(s) 174, 1062, 1341, 1503, 1509, 1539, 1581
SapI GCTCTTC 1 cut(s) 1434
SaqAI TTAA 2 cut(s) 570, 1077
SatI GCNGC 5 cut(s) 257, 260, 405, 1368, 1489
Sau3AI GATC 7 cut(s) 65, 222, 506, 736, 947, 986, 1446
Sau96I GGNCC 4 cut(s) 582, 824, 1158, 1269
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 2 cut(s) 470, 618
SduI GDGCHC 1 cut(s) 1312
SfaNI GCATC 3 cut(s) 750, 1108, 1549
SfuI TTCGAA 3 cut(s) 98, 559, 791
SinI GGWCC 3 cut(s) 582, 824, 1269
SmiMI CAYNNNNRTG 7 cut(s) 174, 1062, 1341, 1503, 1509, 1539, 1581
SmlI CTYRAG 1 cut(s) 1090
SmoI CTYRAG 1 cut(s) 1090
Sse9I AATT 5 cut(s) 94, 572, 705, 858, 925
SspI AATATT 1 cut(s) 1390
SspMI CTAG 2 cut(s) 1260, 1548
StyD4I CCNGG 2 cut(s) 468, 616
StyI CCWWGG 4 cut(s) 426, 1272, 1510, 1582
TaaI ACNGT 6 cut(s) 207, 322, 337, 1298, 1423, 1568
TaqI TCGA 8 cut(s) 98, 559, 747, 777, 791, 989, 1116, 1473
TasI AATT 5 cut(s) 94, 572, 705, 858, 925
TatI WGTACW 1 cut(s) 485
TauI GCSGC 3 cut(s) 259, 262, 407
TfiI GAWTC 3 cut(s) 460, 902, 1186
Tru1I TTAA 2 cut(s) 570, 1077
Tru9I TTAA 2 cut(s) 570, 1077
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 6 cut(s) 139, 176, 210, 331, 1330, 1514
TseI GCWGC 2 cut(s) 1367, 1488
Tsp45I GTSAC 6 cut(s) 139, 176, 210, 331, 1330, 1514
TspDTI ATGAA 3 cut(s) 334, 518, 1491
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 2 cut(s) 1278, 1588
VneI GTGCAC 1 cut(s) 1308
VpaK11BI GGWCC 3 cut(s) 582, 824, 1269
XapI RAATTY 2 cut(s) 572, 705
XceI RCATGY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 4 cut(s) 297, 931, 1168, 1538
XspI CTAG 2 cut(s) 1260, 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.