AT1G55880

cysteine synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014007
Physical Location & Seq
Reverse (-)
20898793 .. 20901247
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55880.1

Sequence Viewer

Length: 1266 bp
ATGGCGCCTGTTAATATGACTGGCGCTGTTGTTGCAGCAGCGGCGTTGTTGATGCTTACTTCTTACAGCTTCTTTTTCCGTCTCTCCGAGAAGAAGAAGAGGAAGGAGAAGTTGACTATGAGAAACGGGCTTGTTGATGCCATTGGCAATACTCCTCTGATTCGTATCAATAGTCTCTCTGAGGCTACTGGATGTGAGATTCTTGGGAAATGCGAGTTTTTGAATCCAGGAGGTAGTGTTAAAGATAGAGTTGCTGTCAAGATCATTCAAGAGGCTTTGGAATCTGGTAAGCTATTCCCTGGAGGAATTGTAACTGAGGGTAGTGCAGGAAGTACTGCCATTAGCCTTGCTACAGTTGCTCCGGCTTATGGGTGTAAATGTCATGTTGTTATACCTGATGATGCTGCTATTGAAAAGTCTCAAATAATTGAAGCCCTTGGAGCTTCTGTTGAGAGAGTGAGGCCAGTGTCAATAACTCACAAGGATCACTATGTCAACATTGCGAGGCGACGGGCTGACGAAGCAAACGAGTTAGCATCAAAGAGAAGACTAGGGAGCGAAACAAATGGCATACACCAGGAGAAAACTAATGGTTGCACGGTTGAGGAAGTGAAAGAGCCTTCCTTATTCTCAGATTCAGTTACCGGTGGCTTCTTTGCAGATCAATTTGAAAACTTGGCAAATTATAGGGCTCATTATGAAGGTACTGGCCCTGAAATCTGGCACCAGACTCAGGGTAATATTGACGCCTTTGTTGCTGCTGCGGGTACAGGCGGGACTTTAGCTGGTGTTTCAAGGTTTCTTCAGGATAAGAATGAAAGAGTTAAATGTTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAACACGGGGAGTGATGTACACAAGAGAAGAAGCTGAAGGGCGTCGGCTAAAGAACCCATTTGATACAATAACAGAAGGGATCGGAATCAACAGGCTTACTAAAAACTTCCTGATGGCAAAACTTGACGGTGGTTTTCGTGGGACTGATAAAGAAGCGGTTGAGATGTCGAGGTTTCTTCTGAAGAATGATGGGCTCTTTGTTGGAAGCTCCTCGGCTATGAACTGTGTTGGGGCAGTAAGGGTGGCTCAGACCCTTGGTCCTGGTCACACAATTGTCACCATTCTTTGTGATAGCGGAATGAGACATCTAAGCAAGTTTCACGACCCTAAGTACTTGAATTTATACGGGTTAAGTCCAACCGCTATCGGATTAGAGTTCCTCGGCATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

421

Amino Acids

45.44

Weight (kDa)

8.51

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 46 - 388 1.2e-62 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55880 AT1G55880
fragaria_vesca FvH4_3g29380 FvH4_3g29380
malus_domestica MD03G1184200.v1.1
prunus_persica Prupe.4G242200_v2.0.a1
pyrus_communis pycom03g13750
rosa_chinensis RchiOBHm_Chr5g0053771
rosa_laevigata RLG00000034902
rosa_multiflora Rmu_sc0001759.1_g000024
rosa_roxburghii Rroxscaffold_1G00026820
rosa_rugosa Rorug05G0282500 Rorug05G0282600 Rorug05G0282700
rosa_samantha Rh5BG364700 Rh5DG379500
rosa_wichuraiana Rw5G033350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 723
AciI CCGC 6 cut(s) 41, 764, 774, 1028, 1167, 1233
AclWI GGATC 4 cut(s) 492, 836, 859, 959
AcsI RAATTY 1 cut(s) 1210
AcuI CTGAAG 3 cut(s) 788, 927, 1073
AcyI GRCGYC 3 cut(s) 5, 747, 913
AfaI GTAC 6 cut(s) 334, 706, 769, 863, 890, 1205
AfiI CCNNNNNNNGG 3 cut(s) 368, 733, 854
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 7 cut(s) 223, 269, 413, 431, 671, 795, 1210
AhdI GACNNNNNGTC 1 cut(s) 1128
AjnI CCWGG 5 cut(s) 226, 298, 576, 847, 1132
AluBI AGCT 6 cut(s) 69, 292, 443, 785, 905, 1080
AluI AGCT 6 cut(s) 69, 292, 443, 785, 905, 1080
Alw26I GTCTC 4 cut(s) 86, 179, 423, 1168
AlwI GGATC 4 cut(s) 492, 836, 859, 959
AoxI GGCC 2 cut(s) 461, 709
ApeKI GCWGC 5 cut(s) 35, 38, 404, 758, 761
ApoI RAATTY 1 cut(s) 1210
AsiGI ACCGGT 1 cut(s) 644
AspLEI GCGC 2 cut(s) 7, 26
AspS9I GGNCC 2 cut(s) 710, 1130
AsuHPI GGTGA 1 cut(s) 1141
AvaII GGWCC 1 cut(s) 1130
BanI GGYRCC 2 cut(s) 4, 723
BanII GRGCYC 2 cut(s) 694, 1068
BbsI GAAGAC 1 cut(s) 553
BbvI GCAGC 5 cut(s) 47, 50, 391, 745, 748
BccI CCATC 2 cut(s) 979, 1055
BciT130I CCWGG 5 cut(s) 228, 300, 578, 849, 1134
BcoDI GTCTC 4 cut(s) 86, 179, 423, 1168
BfaI CTAG 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 2 cut(s) 8, 27
BisI GCNGC 6 cut(s) 36, 39, 42, 405, 759, 762
BlsI GCNGC 6 cut(s) 37, 40, 43, 406, 760, 763
BmcAI AGTACT 2 cut(s) 334, 1205
Bme1390I CCNGG 5 cut(s) 228, 300, 578, 849, 1134
Bme18I GGWCC 1 cut(s) 1130
BmeRI GACNNNNNGTC 1 cut(s) 1128
BmgT120I GGNCC 2 cut(s) 710, 1130
BmiI GGNNCC 2 cut(s) 6, 725
BmrFI CCNGG 5 cut(s) 228, 300, 578, 849, 1134
BmsI GCATC 4 cut(s) 42, 127, 391, 545
BpiI GAAGAC 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 321
BsaBI GATNNNNATC 2 cut(s) 164, 956
BsaHI GRCGYC 3 cut(s) 5, 747, 913
BsaJI CCNNGG 5 cut(s) 298, 436, 1083, 1126, 1252
BsaWI WCCGGW 1 cut(s) 644
BsaXI ACNNNNNCTCC 8 cut(s) 222, 252, 294, 324, 343, 373, 432, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 733, 854
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 4 cut(s) 25, 193, 464, 712
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 2 cut(s) 164, 956
BseBI CCWGG 5 cut(s) 228, 300, 578, 849, 1134
BseDI CCNNGG 5 cut(s) 298, 436, 1083, 1126, 1252
BseGI GGATG 1 cut(s) 197
BseJI GATNNNNATC 2 cut(s) 164, 956
BseLI CCNNNNNNNGG 3 cut(s) 368, 733, 854
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 5 cut(s) 171, 306, 645, 746, 1133
BseNI ACTGG 4 cut(s) 25, 193, 464, 712
BseRI GAGGAG 2 cut(s) 144, 1072
BseXI GCAGC 5 cut(s) 47, 50, 391, 745, 748
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 2 cut(s) 463, 711
BshNI GGYRCC 2 cut(s) 4, 723
BshTI ACCGGT 1 cut(s) 644
BsiSI CCGG 2 cut(s) 362, 645
BslFI GGGAC 2 cut(s) 790, 1027
BslI CCNNNNNNNGG 3 cut(s) 368, 733, 854
BsmAI GTCTC 4 cut(s) 86, 179, 423, 1168
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 790, 1027
BsnI GGCC 2 cut(s) 463, 711
Bsp1286I GDGCHC 2 cut(s) 694, 1068
Bsp1407I TGTACA 2 cut(s) 861, 888
Bsp143I GATC 6 cut(s) 261, 484, 661, 841, 851, 951
BspACI CCGC 6 cut(s) 41, 764, 774, 1028, 1167, 1233
BspANI GGCC 2 cut(s) 463, 711
BspCNI CTCAG 5 cut(s) 172, 307, 644, 745, 1132
BspLI GGNNCC 2 cut(s) 6, 725
BspPI GGATC 4 cut(s) 492, 836, 859, 959
BspT107I GGYRCC 2 cut(s) 4, 723
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 644
BsrGI TGTACA 2 cut(s) 861, 888
BsrI ACTGG 4 cut(s) 25, 193, 464, 712
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 5 cut(s) 298, 436, 1083, 1126, 1252
BssMI GATC 6 cut(s) 261, 484, 661, 841, 851, 951
BssNI GRCGYC 3 cut(s) 5, 747, 913
BssT1I CCWWGG 2 cut(s) 436, 1126
Bst2UI CCWGG 5 cut(s) 228, 300, 578, 849, 1134
Bst4CI ACNGT 4 cut(s) 355, 601, 1001, 1097
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 3 cut(s) 5, 747, 913
BstAUI TGTACA 2 cut(s) 861, 888
BstDEI CTNAG 7 cut(s) 180, 315, 631, 732, 1119, 1181, 1200
BstF5I GGATG 1 cut(s) 197
BstH2I RGCGCY 2 cut(s) 8, 27
BstHHI GCGC 2 cut(s) 7, 26
BstKTI GATC 6 cut(s) 264, 487, 664, 844, 854, 954
BstMAI GTCTC 4 cut(s) 86, 179, 423, 1168
BstMBI GATC 6 cut(s) 261, 484, 661, 841, 851, 951
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 356, 440, 521, 755
BstNI CCWGG 5 cut(s) 228, 300, 578, 849, 1134
BstSCI CCNGG 5 cut(s) 226, 298, 576, 847, 1132
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 5 cut(s) 47, 50, 391, 745, 748
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 851
BstYI RGATCY 1 cut(s) 851
BsuRI GGCC 2 cut(s) 463, 711
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 471
CfoI GCGC 2 cut(s) 7, 26
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 710, 1130
CseI GACGC 2 cut(s) 755, 902
Csp6I GTAC 6 cut(s) 333, 705, 768, 862, 889, 1204
CspAI ACCGGT 1 cut(s) 644
CviAII CATG 1 cut(s) 383
CviQI GTAC 6 cut(s) 333, 705, 768, 862, 889, 1204
DdeI CTNAG 7 cut(s) 180, 315, 631, 732, 1119, 1181, 1200
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 263, 486, 663, 843, 853, 953
DpnII GATC 6 cut(s) 261, 484, 661, 841, 851, 951
DriI GACNNNNNGTC 1 cut(s) 1128
Eam1104I CTCTTC 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 1128
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 436, 1126
Eco24I GRGCYC 2 cut(s) 694, 1068
Eco47I GGWCC 1 cut(s) 1130
Eco57I CTGAAG 3 cut(s) 788, 927, 1073
EcoRII CCWGG 5 cut(s) 226, 298, 576, 847, 1132
EcoT14I CCWWGG 2 cut(s) 436, 1126
EcoT38I GRGCYC 2 cut(s) 694, 1068
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 436, 1126
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 1 cut(s) 386
FaqI GGGAC 2 cut(s) 790, 1027
FatI CATG 1 cut(s) 382
FauI CCCGC 2 cut(s) 757, 767
Fnu4HI GCNGC 6 cut(s) 36, 39, 42, 405, 759, 762
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 2 cut(s) 694, 1068
Fsp4HI GCNGC 6 cut(s) 36, 39, 42, 405, 759, 762
FspBI CTAG 1 cut(s) 551
GlaI GCGC 2 cut(s) 6, 25
GluI GCNGC 6 cut(s) 36, 39, 42, 405, 759, 762
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 2 cut(s) 8, 27
HaeIII GGCC 2 cut(s) 463, 711
HapII CCGG 2 cut(s) 362, 645
HgaI GACGC 2 cut(s) 755, 902
HhaI GCGC 2 cut(s) 7, 26
Hin1I GRCGYC 3 cut(s) 5, 747, 913
Hin1II CATG 1 cut(s) 386
Hin6I GCGC 2 cut(s) 5, 24
HinP1I GCGC 2 cut(s) 5, 24
HincII GTYRAC 2 cut(s) 114, 496
HindII GTYRAC 2 cut(s) 114, 496
HinfI GANTC 7 cut(s) 160, 199, 223, 281, 635, 730, 957
HpaII CCGG 2 cut(s) 362, 645
HphI GGTGA 1 cut(s) 1141
Hpy166II GTNNAC 3 cut(s) 114, 496, 891
Hpy188I TCNGA 9 cut(s) 88, 159, 181, 634, 837, 956, 1053, 1122, 1241
Hpy188III TCNNGA 5 cut(s) 259, 269, 806, 982, 1193
Hpy8I GTNNAC 3 cut(s) 114, 496, 891
Hpy99I CGWCG 2 cut(s) 513, 918
HpyAV CCTTC 5 cut(s) 97, 630, 695, 902, 941
HpyCH4III ACNGT 4 cut(s) 355, 601, 1001, 1097
HpyCH4V TGCA 4 cut(s) 35, 326, 597, 659
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 356, 440, 521, 755
HpyF3I CTNAG 7 cut(s) 180, 315, 631, 732, 1119, 1181, 1200
Hsp92I GRCGYC 3 cut(s) 5, 747, 913
Hsp92II CATG 1 cut(s) 386
HspAI GCGC 2 cut(s) 5, 24
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 6 cut(s) 261, 484, 661, 841, 851, 951
LmnI GCTCC 4 cut(s) 364, 440, 555, 1085
Lsp1109I GCAGC 5 cut(s) 47, 50, 391, 745, 748
LweI GCATC 4 cut(s) 42, 127, 391, 545
MaeI CTAG 1 cut(s) 551
MaeIII GTNAC 5 cut(s) 310, 640, 871, 1136, 1147
MalI GATC 6 cut(s) 263, 486, 663, 843, 853, 953
MboI GATC 6 cut(s) 261, 484, 661, 841, 851, 951
MboII GAAGA 8 cut(s) 103, 106, 109, 558, 794, 911, 1040, 1066
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 2 cut(s) 694, 1068
MluCI AATT 6 cut(s) 306, 426, 665, 682, 1143, 1210
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 2 cut(s) 1054, 1253
MseI TTAA 4 cut(s) 12, 240, 825, 1223
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 362, 645
MspR9I CCNGG 5 cut(s) 228, 300, 578, 849, 1134
MunI CAATTG 1 cut(s) 1143
MvaI CCWGG 5 cut(s) 228, 300, 578, 849, 1134
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 356, 440, 521, 755
NarI GGCGCC 1 cut(s) 5
NdeII GATC 6 cut(s) 261, 484, 661, 841, 851, 951
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 6, 725
NmeAIII GCCGAG 2 cut(s) 1064, 1233
NmuCI GTSAC 2 cut(s) 1136, 1147
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PfeI GAWTC 6 cut(s) 160, 199, 223, 281, 635, 957
PfoI TCCNGGA 2 cut(s) 226, 847
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 6 cut(s) 37, 40, 43, 406, 760, 763
PleI GAGTC 1 cut(s) 724
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 724
Psp6I CCWGG 5 cut(s) 226, 298, 576, 847, 1132
PspGI CCWGG 5 cut(s) 226, 298, 576, 847, 1132
PspN4I GGNNCC 2 cut(s) 6, 725
PspPI GGNCC 2 cut(s) 710, 1130
PsuI RGATCY 1 cut(s) 851
RsaI GTAC 6 cut(s) 334, 706, 769, 863, 890, 1205
RsaNI GTAC 6 cut(s) 333, 705, 768, 862, 889, 1204
SaqAI TTAA 4 cut(s) 12, 240, 825, 1223
SatI GCNGC 6 cut(s) 36, 39, 42, 405, 759, 762
Sau3AI GATC 6 cut(s) 261, 484, 661, 841, 851, 951
Sau96I GGNCC 2 cut(s) 710, 1130
ScaI AGTACT 2 cut(s) 334, 1205
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 5 cut(s) 228, 300, 578, 849, 1134
SduI GDGCHC 2 cut(s) 694, 1068
SfaNI GCATC 4 cut(s) 42, 127, 391, 545
SfcI CTRYAG 1 cut(s) 351
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 1130
Sse9I AATT 6 cut(s) 306, 426, 665, 682, 1143, 1210
SsiI CCGC 6 cut(s) 41, 764, 774, 1028, 1167, 1233
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 742
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 5 cut(s) 226, 298, 576, 847, 1132
StyI CCWWGG 2 cut(s) 436, 1126
TaaI ACNGT 4 cut(s) 355, 601, 1001, 1097
TaqI TCGA 1 cut(s) 1040
TasI AATT 6 cut(s) 306, 426, 665, 682, 1143, 1210
TatI WGTACW 4 cut(s) 332, 861, 888, 1203
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 6 cut(s) 160, 199, 223, 281, 635, 957
Tru1I TTAA 4 cut(s) 12, 240, 825, 1223
Tru9I TTAA 4 cut(s) 12, 240, 825, 1223
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 2 cut(s) 1136, 1147
TseI GCWGC 5 cut(s) 35, 38, 404, 758, 761
Tsp45I GTSAC 2 cut(s) 1136, 1147
TspDTI ATGAA 3 cut(s) 714, 831, 1106
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 1130
XapI RAATTY 1 cut(s) 1210
XspI CTAG 1 cut(s) 551
ZrmI AGTACT 2 cut(s) 334, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.