AT1G56020

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011913
Physical Location & Seq
Forward (+)
20951856 .. 20953595
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56020.1

Sequence Viewer

Length: 1197 bp
ATGGCTTCCGCTTGCGTTAAAAGTGCCGGTGTTTCGCCGGAGAAGTTCTCGTCGTACGGATGGACGAGCCCTCGGATGTCTTTAACCAGAGACGACAACAGACGCTCTTCCTCCGTTGACAAGCAACAATCTGACCCATTACCGGAAATCCAAGATCCAGTTGTGGATTTCGAGTTTTGCCTTGAGGATCCGGTCACAATGCTCTCTGCCGATGAGCTCTTCTCCGACGGAAAGCTCGTACCTTTGAAGTTCTCTGGCCCTAAGACGACGACGACGACGACGTCAACGACAGTCAACACAACTACCACCGAACCAAGAGGATCACCAGAGGTTCTGAAATCATGCCGGAGACTTGAGATGGAGATCTCTGACCTCTTCTCTCCTAAAGCTCCTCGTTGTACGACTCGATGGAGAGAGCTTTTAGGTCTCAAGAGACTCGTCAACGCCAAGGAACAAGAAGAATCTATTAAAGCTTCTTCTTCTTCTTCATCCACAAACCCCAAAACGTCATCGTTTAAGCAATTTCTTCACCGGGGATCTAAATCTTCTACCGCCGCATCGTCGCCGTTGCAAAAAGAATCAGATATCTCCGAATCAATCTCAGTCGCATCTTCACGTCTCTCACTCTCTTCATCGTCTTCCTCTAGCCACGAGATCGATGATCTTCCAAGACTCTCGCTTGACCTCGATAAACCAAGTGCGAATCCCTTTGCTCCGTCGCGGACTCATTCACGAAACCTTAACCAACCAAGAATCAGATTAGCCAAACCAAGACGGAATCATCCACCGTCGACGCCTTCCGTTGACGGATCATCATCATCGTCGGCGTGTATCGAATCTCGGGGTCTCACCGTGACGGCGGATAGTCCGAGACTCAACGCCTCCGGTAAAATCGTGTTTCATGGACTTGAAAGAAGCTCGAGTAGTCCCGGAAGCTTCACCGGTGGACCTAGAATGAAGCAGCACCATGGAATGCCTAGATCGTACTCTGCTAATGTCAGAATCACGCCGGTGCTTAATGTTCCGGTTTGTTCTCTGAAATCAGGGCTTTTCTTTGGCCAGCTTTTCTCATCTTCGTCTTCATCGTCTTCTTCTTCTCCGTCTCCGGGGAACAAATCTCAGTTACAGAGCAACGGAAGCAAGAACCGGATTAATCGAACCAGGCTTGAACCGAAATTCGAACAATTAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

398

Amino Acids

43.13

Weight (kDa)

9.71

Isoelectric Point (pI)

72.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56020 AT1G79060 AT3G12970
fragaria_vesca FvH4_3g16010
malus_domestica MD05G1215900.v1.1 MD10G1198500.v1.1
prunus_persica Prupe.4G143300_v2.0.a1
pyrus_communis pycom05g19860 pycom10g17120
rosa_chinensis RchiOBHm_Chr5g0026971
rosa_laevigata RLG00000032974
rosa_multiflora Rmu_sc0002742.1_g000001
rosa_roxburghii Rroxscaffold_1G00052510
rosa_rugosa Rorug05G0096400
rosa_samantha Rh5AG189800 Rh5BG187300 Rh5CG207000 Rh5DG189000
rosa_wichuraiana Rw5G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AatII GACGTC 1 cut(s) 284
AccI GTMKAC 1 cut(s) 791
AccII CGCG 1 cut(s) 721
AciI CCGC 5 cut(s) 9, 552, 555, 721, 860
AclWI GGATC 6 cut(s) 149, 182, 195, 328, 544, 817
AcoI YGGCCR 1 cut(s) 1057
AcsI RAATTY 1 cut(s) 1175
AcyI GRCGYC 2 cut(s) 281, 794
AfaI GTAC 4 cut(s) 56, 240, 400, 986
AfiI CCNNNNNNNGG 2 cut(s) 142, 1106
AgeI ACCGGT 1 cut(s) 941
AgsI TTSAA 3 cut(s) 247, 911, 1169
AjiI CACGTC 1 cut(s) 617
AjnI CCWGG 1 cut(s) 1160
AleI CACNNNNGTG 1 cut(s) 1010
AluBI AGCT 8 cut(s) 217, 235, 389, 418, 473, 918, 936, 1063
AluI AGCT 8 cut(s) 217, 235, 389, 418, 473, 918, 936, 1063
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 8 cut(s) 84, 343, 427, 431, 623, 851, 865, 1107
AlwI GGATC 6 cut(s) 149, 182, 195, 328, 544, 817
Ama87I CYCGRG 2 cut(s) 840, 919
AoxI GGCC 2 cut(s) 256, 1057
ApeKI GCWGC 1 cut(s) 961
ApoI RAATTY 1 cut(s) 1175
AseI ATTAAT 1 cut(s) 1152
AsiGI ACCGGT 1 cut(s) 941
AspS9I GGNCC 2 cut(s) 257, 947
AsuC2I CCSGG 3 cut(s) 533, 930, 1107
AsuHPI GGTGA 4 cut(s) 315, 521, 841, 931
AsuII TTCGAA 1 cut(s) 1179
AvaI CYCGRG 2 cut(s) 840, 919
AvaII GGWCC 1 cut(s) 947
BalI TGGCCA 1 cut(s) 1059
BamHI GGATCC 1 cut(s) 187
BanII GRGCYC 2 cut(s) 71, 219
BauI CACGAG 1 cut(s) 650
BbsI GAAGAC 3 cut(s) 630, 1071, 1080
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 973
BccI CCATC 3 cut(s) 54, 352, 402
BceAI ACGGC 2 cut(s) 550, 873
BciT130I CCWGG 1 cut(s) 1162
BcnI CCSGG 3 cut(s) 533, 930, 1107
BcoDI GTCTC 8 cut(s) 84, 343, 427, 431, 623, 851, 865, 1107
BfaI CTAG 3 cut(s) 645, 951, 978
BglII AGATCT 1 cut(s) 363
BisI GCNGC 2 cut(s) 555, 962
BlsI GCNGC 2 cut(s) 556, 963
Bme1390I CCNGG 4 cut(s) 533, 930, 1107, 1162
Bme18I GGWCC 1 cut(s) 947
BmeT110I CYCGRG 2 cut(s) 840, 919
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 257, 947
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 4 cut(s) 533, 930, 1107, 1162
BmsI GCATC 2 cut(s) 566, 617
BpiI GAAGAC 3 cut(s) 630, 1071, 1080
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 206, 238
Bpu14I TTCGAA 1 cut(s) 1179
BpuEI CTTGAG 3 cut(s) 203, 374, 413
BpuMI CCSGG 3 cut(s) 533, 930, 1107
Bsa29I ATCGAT 1 cut(s) 657
BsaBI GATNNNNATC 3 cut(s) 362, 541, 814
BsaHI GRCGYC 2 cut(s) 281, 794
BsaI GGTCTC 2 cut(s) 431, 851
BsaJI CCNNGG 5 cut(s) 71, 447, 532, 967, 1106
BsaWI WCCGGW 6 cut(s) 142, 190, 884, 941, 1024, 1146
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 1106
Bse118I RCCGGY 3 cut(s) 26, 941, 1009
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 3 cut(s) 362, 541, 814
BseBI CCWGG 1 cut(s) 1162
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 5 cut(s) 71, 447, 532, 967, 1106
BseGI GGATG 4 cut(s) 65, 81, 488, 781
BseJI GATNNNNATC 3 cut(s) 362, 541, 814
BseLI CCNNNNNNNGG 2 cut(s) 142, 1106
BseMII CTCAG 2 cut(s) 615, 1133
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 973
Bsh1236I CGCG 1 cut(s) 721
BshFI GGCC 2 cut(s) 258, 1059
BshTI ACCGGT 1 cut(s) 941
BshVI ATCGAT 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 2 cut(s) 840, 919
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 2 cut(s) 142, 1106
BsmAI GTCTC 8 cut(s) 84, 343, 427, 431, 623, 851, 865, 1107
BsmBI CGTCTC 3 cut(s) 84, 623, 1107
BsmFI GGGAC 1 cut(s) 912
BsmI GAATGC 1 cut(s) 978
BsnI GGCC 2 cut(s) 258, 1059
Bso31I GGTCTC 2 cut(s) 431, 851
BsoBI CYCGRG 2 cut(s) 840, 919
Bsp119I TTCGAA 1 cut(s) 1179
Bsp1286I GDGCHC 2 cut(s) 71, 219
Bsp143I GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
Bsp19I CCATGG 1 cut(s) 967
BspACI CCGC 5 cut(s) 9, 552, 555, 721, 860
BspANI GGCC 2 cut(s) 258, 1059
BspCNI CTCAG 2 cut(s) 614, 1132
BspDI ATCGAT 1 cut(s) 657
BspFNI CGCG 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 6 cut(s) 149, 182, 195, 328, 544, 817
BspQI GCTCTTC 2 cut(s) 112, 224
BspT104I TTCGAA 1 cut(s) 1179
BspTNI GGTCTC 2 cut(s) 431, 851
BsrFI RCCGGY 3 cut(s) 26, 941, 1009
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 3 cut(s) 26, 941, 1009
BssECI CCNNGG 5 cut(s) 71, 447, 532, 967, 1106
BssMI GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
BssNI GRCGYC 2 cut(s) 281, 794
BssSI CACGAG 1 cut(s) 650
BssT1I CCWWGG 2 cut(s) 447, 967
Bst2BI CACGAG 1 cut(s) 650
Bst2UI CCWGG 1 cut(s) 1162
Bst4CI ACNGT 3 cut(s) 292, 789, 853
Bst6I CTCTTC 4 cut(s) 112, 224, 380, 634
BstACI GRCGYC 2 cut(s) 281, 794
BstBI TTCGAA 1 cut(s) 1179
BstC8I GCNNGC 2 cut(s) 13, 1061
BstDEI CTNAG 3 cut(s) 261, 601, 1119
BstDSI CCRYGG 1 cut(s) 967
BstF5I GGATG 4 cut(s) 65, 81, 488, 781
BstFNI CGCG 1 cut(s) 721
BstKTI GATC 9 cut(s) 157, 190, 323, 366, 539, 657, 664, 812, 983
BstMAI GTCTC 8 cut(s) 84, 343, 427, 431, 623, 851, 865, 1107
BstMBI GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
BstMWI GCNNNNNNNGC 1 cut(s) 1137
BstNI CCWGG 1 cut(s) 1162
BstSCI CCNGG 4 cut(s) 531, 928, 1105, 1160
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 1 cut(s) 973
BstV2I GAAGAC 3 cut(s) 630, 1071, 1080
BstX2I RGATCY 4 cut(s) 154, 187, 363, 536
BstYI RGATCY 4 cut(s) 154, 187, 363, 536
Bsu15I ATCGAT 1 cut(s) 657
BsuRI GGCC 2 cut(s) 258, 1059
BsuTUI ATCGAT 1 cut(s) 657
BtgI CCRYGG 1 cut(s) 967
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 4 cut(s) 65, 81, 488, 781
Cac8I GCNNGC 2 cut(s) 13, 1061
Cfr10I RCCGGY 3 cut(s) 26, 941, 1009
Cfr13I GGNCC 2 cut(s) 257, 947
ClaI ATCGAT 1 cut(s) 657
CseI GACGC 2 cut(s) 111, 802
Csp6I GTAC 4 cut(s) 55, 239, 399, 985
CspAI ACCGGT 1 cut(s) 941
CviAII CATG 3 cut(s) 342, 902, 968
CviQI GTAC 4 cut(s) 55, 239, 399, 985
DdeI CTNAG 3 cut(s) 261, 601, 1119
DpnI GATC 9 cut(s) 156, 189, 322, 365, 538, 656, 663, 811, 982
DpnII GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 1057
Eam1104I CTCTTC 4 cut(s) 112, 224, 380, 634
EarI CTCTTC 4 cut(s) 112, 224, 380, 634
EciI GGCGGA 1 cut(s) 875
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 447, 967
Eco24I GRGCYC 2 cut(s) 71, 219
Eco31I GGTCTC 2 cut(s) 431, 851
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 947
Eco53kI GAGCTC 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 840, 919
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 1160
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 447, 967
EcoT38I GRGCYC 2 cut(s) 71, 219
ErhI CCWWGG 2 cut(s) 447, 967
Esp3I CGTCTC 3 cut(s) 84, 623, 1107
FaeI CATG 3 cut(s) 345, 905, 971
FaiI YATR 3 cut(s) 343, 903, 969
FaqI GGGAC 1 cut(s) 912
FatI CATG 3 cut(s) 341, 901, 967
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 2 cut(s) 555, 962
FokI GGATG 4 cut(s) 72, 88, 475, 768
FriOI GRGCYC 2 cut(s) 71, 219
Fsp4HI GCNGC 2 cut(s) 555, 962
FspBI CTAG 3 cut(s) 645, 951, 978
GluI GCNGC 2 cut(s) 555, 962
HaeIII GGCC 2 cut(s) 258, 1059
HgaI GACGC 2 cut(s) 111, 802
Hin1I GRCGYC 2 cut(s) 281, 794
Hin1II CATG 3 cut(s) 345, 905, 971
HincII GTYRAC 6 cut(s) 118, 285, 295, 442, 792, 805
HindII GTYRAC 6 cut(s) 118, 285, 295, 442, 792, 805
HindIII AAGCTT 2 cut(s) 471, 934
HphI GGTGA 4 cut(s) 315, 521, 841, 931
Hpy166II GTNNAC 7 cut(s) 118, 285, 295, 442, 792, 805, 947
Hpy188III TCNNGA 2 cut(s) 430, 732
Hpy8I GTNNAC 7 cut(s) 118, 285, 295, 442, 792, 805, 947
HpyAV CCTTC 1 cut(s) 807
HpyCH4III ACNGT 3 cut(s) 292, 789, 853
HpyCH4IV ACGT 3 cut(s) 281, 506, 616
HpyCH4V TGCA 1 cut(s) 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 1137
HpyF3I CTNAG 3 cut(s) 261, 601, 1119
HpySE526I ACGT 3 cut(s) 281, 506, 616
Hsp92I GRCGYC 2 cut(s) 281, 794
Hsp92II CATG 3 cut(s) 345, 905, 971
Kzo9I GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
LguI GCTCTTC 2 cut(s) 112, 224
LmnI GCTCC 2 cut(s) 394, 718
Lsp1109I GCAGC 1 cut(s) 973
LweI GCATC 2 cut(s) 566, 617
MaeI CTAG 3 cut(s) 645, 951, 978
MaeII ACGT 3 cut(s) 281, 506, 616
MaeIII GTNAC 3 cut(s) 193, 853, 1122
MalI GATC 9 cut(s) 156, 189, 322, 365, 538, 656, 663, 811, 982
MboI GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
MflI RGATCY 4 cut(s) 154, 187, 363, 536
MhlI GDGCHC 2 cut(s) 71, 219
MlsI TGGCCA 1 cut(s) 1059
MluCI AATT 3 cut(s) 521, 1175, 1184
MluNI TGGCCA 1 cut(s) 1059
MlyI GAGTC 5 cut(s) 397, 429, 666, 718, 867
MmeI TCCRAC 1 cut(s) 249
Mox20I TGGCCA 1 cut(s) 1059
MscI TGGCCA 1 cut(s) 1059
MseI TTAA 7 cut(s) 18, 83, 468, 516, 741, 1017, 1152
MslI CAYNNNNRTG 1 cut(s) 1010
Msp20I TGGCCA 1 cut(s) 1059
MspR9I CCNGG 4 cut(s) 533, 930, 1107, 1162
Mva1269I GAATGC 1 cut(s) 978
MvaI CCWGG 1 cut(s) 1162
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 1 cut(s) 1137
NciI CCSGG 3 cut(s) 533, 930, 1107
NcoI CCATGG 1 cut(s) 967
NdeII GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
NlaIII CATG 3 cut(s) 345, 905, 971
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 193, 853
NspV TTCGAA 1 cut(s) 1179
OliI CACNNNNGTG 1 cut(s) 1010
PaeR7I CTCGAG 1 cut(s) 919
PciSI GCTCTTC 2 cut(s) 112, 224
PcsI WCGNNNNNNNCGW 6 cut(s) 234, 272, 275, 278, 284, 1082
PctI GAATGC 1 cut(s) 978
PfeI GAWTC 8 cut(s) 461, 578, 593, 703, 753, 778, 836, 1002
Pfl23II CGTACG 1 cut(s) 54
PflFI GACNNNGTC 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 928
PinAI ACCGGT 1 cut(s) 941
PkrI GCNGC 2 cut(s) 556, 963
PleI GAGTC 5 cut(s) 397, 429, 666, 718, 867
PpsI GAGTC 5 cut(s) 397, 429, 666, 718, 867
PshBI ATTAAT 1 cut(s) 1152
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 1160
PspGI CCWGG 1 cut(s) 1160
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 257, 947
PspXI VCTCGAGB 1 cut(s) 919
PsuI RGATCY 4 cut(s) 154, 187, 363, 536
PsyI GACNNNGTC 1 cut(s) 280
RsaI GTAC 4 cut(s) 56, 240, 400, 986
RsaNI GTAC 4 cut(s) 55, 239, 399, 985
RseI CAYNNNNRTG 1 cut(s) 1010
SacI GAGCTC 1 cut(s) 219
SalI GTCGAC 1 cut(s) 790
SapI GCTCTTC 2 cut(s) 112, 224
SaqAI TTAA 7 cut(s) 18, 83, 468, 516, 741, 1017, 1152
SatI GCNGC 2 cut(s) 555, 962
Sau3AI GATC 9 cut(s) 154, 187, 320, 363, 536, 654, 661, 809, 980
Sau96I GGNCC 2 cut(s) 257, 947
SchI GAGTC 5 cut(s) 397, 429, 666, 718, 867
ScrFI CCNGG 4 cut(s) 533, 930, 1107, 1162
SduI GDGCHC 2 cut(s) 71, 219
SfaNI GCATC 2 cut(s) 566, 617
Sfr274I CTCGAG 1 cut(s) 919
SfuI TTCGAA 1 cut(s) 1179
SgrAI CRCCGGYG 2 cut(s) 941, 1009
SgrDI CGTCGACG 1 cut(s) 790
SinI GGWCC 1 cut(s) 947
SlaI CTCGAG 1 cut(s) 919
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 4 cut(s) 182, 353, 428, 919
SmoI CTYRAG 4 cut(s) 182, 353, 428, 919
Sse9I AATT 3 cut(s) 521, 1175, 1184
SsiI CCGC 5 cut(s) 9, 552, 555, 721, 860
SspMI CTAG 3 cut(s) 645, 951, 978
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 4 cut(s) 531, 928, 1105, 1160
StyI CCWWGG 2 cut(s) 447, 967
TaaI ACNGT 3 cut(s) 292, 789, 853
TaiI ACGT 3 cut(s) 284, 509, 619
TaqI TCGA 9 cut(s) 171, 406, 657, 687, 791, 834, 920, 1156, 1179
TasI AATT 3 cut(s) 521, 1175, 1184
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 8 cut(s) 461, 578, 593, 703, 753, 778, 836, 1002
Tru1I TTAA 7 cut(s) 18, 83, 468, 516, 741, 1017, 1152
Tru9I TTAA 7 cut(s) 18, 83, 468, 516, 741, 1017, 1152
TseFI GTSAC 2 cut(s) 193, 853
TseI GCWGC 1 cut(s) 961
Tsp45I GTSAC 2 cut(s) 193, 853
TspDTI ATGAA 5 cut(s) 477, 621, 890, 971, 1071
TspGWI ACGGA 9 cut(s) 72, 103, 243, 705, 790, 790, 822, 1089, 1149
Tth111I GACNNNGTC 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 947
VspI ATTAAT 1 cut(s) 1152
XapI RAATTY 1 cut(s) 1175
XhoI CTCGAG 1 cut(s) 919
XmiI GTMKAC 1 cut(s) 791
XspI CTAG 3 cut(s) 645, 951, 978
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.