Rorug05G0096400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011913
Physical Location & Seq
Forward (+)
8547115 .. 8547852
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0096400.1

Sequence Viewer

Length: 738 bp
ATGTCCACCATCAGCGATATAACCGCCTTTGTGCGAATGAGTATAGCTACGGTCAGTAGCATCGGACATGAGTTTATGGTCGGAGCAAATAACATCTTGTCTACCGGAATCCATGGTACCAATGAAGCGAGACGTGATAGGTCAGAAGATACGATCCAGGAATGTGCTATCTGTATGGATGAAATTTCTAGCTTTGATAATGATGAGCCTATTGCTCGCTTGTCCTGCTCACACATTTTTCATGCGAATTGTGTTGAAAAATGGAGGGTGATCGGTAGCAATGGTGGCTTGTGTCCCGTTTGCCGACACACAATAGATGTTGTGGAGGCCGCTCCTGTGCCACCAAGACCCACAAGAAACCGGCCCACACAACACGAAACCCACAGGTTCCCACCTGTTGCCGGGGAGCTAAGAAGATCTTTAAGCACCATAAAATACTGGTCCACAAGATCATTGATACGGCTCGCCGGCGTGCAGCCATCTAGACCCTCGAGGCTGCAGTGGGATATGTATAATGTTCTCATGTTGGCTGGGAGGTTGATGCTTGTTTACGTCTTGTGCTACCTTTTAATTGAGCAGCTAACTAAGCCGCTTGTTGAGTACATCTTTCATGCGCTCACGTATGCCTTTCAGGCGCTGCTCATGTATGTTCTTCATGCACTGCTCATCTATGTCATACCTATTACTTTGGTCATCATCTTCTTCGGAATCATCTTCTTTGGATACAATCAGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.8

Weight (kDa)

8.19

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 53 - 102 1.4e-11 Ring finger domain
zf-RING_11 PF17123 54 - 85 4e-08 RING-like zinc finger
zf-RING_5 PF14634 54 - 103 4.9e-07 zinc-RING finger domain
zf-C3HC4 PF00097 55 - 101 9e-06 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 68 - 107 6.6e-07 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56020 AT1G79060 AT3G12970
fragaria_vesca FvH4_3g16010
malus_domestica MD05G1215900.v1.1 MD10G1198500.v1.1
prunus_persica Prupe.4G143300_v2.0.a1
pyrus_communis pycom05g19860 pycom10g17120
rosa_chinensis RchiOBHm_Chr5g0026971
rosa_laevigata RLG00000032974
rosa_multiflora Rmu_sc0002742.1_g000001
rosa_roxburghii Rroxscaffold_1G00052510
rosa_rugosa Rorug05G0096400
rosa_samantha Rh5AG189800 Rh5BG187300 Rh5CG207000 Rh5DG189000
rosa_wichuraiana Rw5G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 490
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 101
AciI CCGC 3 cut(s) 24, 330, 590
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 183
AfaI GTAC 2 cut(s) 118, 602
AfeI AGCGCT 1 cut(s) 734
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 257
AjiI CACGTC 1 cut(s) 134
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 4 cut(s) 47, 192, 409, 580
AluI AGCT 4 cut(s) 47, 192, 409, 580
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 734
AoxI GGCC 2 cut(s) 327, 362
ApeKI GCWGC 4 cut(s) 475, 496, 577, 637
ApoI RAATTY 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 116
AspLEI GCGC 3 cut(s) 616, 637, 735
AspS9I GGNCC 2 cut(s) 363, 441
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 483, 487, 589, 624
BccI CCATC 2 cut(s) 17, 487
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 716
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 3 cut(s) 189, 483, 736
BfmI CTRYAG 1 cut(s) 497
BfoI RGCGCY 2 cut(s) 638, 736
BfuI GTATCC 1 cut(s) 716
BglI GCCNNNNNGGC 1 cut(s) 632
BglII AGATCT 1 cut(s) 416
BisI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
BlsI GCNGC 6 cut(s) 331, 477, 498, 579, 591, 639
Bme1390I CCNGG 2 cut(s) 158, 403
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 490
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 363, 441
BmiI GGNNCC 2 cut(s) 118, 389
BmrFI CCNGG 2 cut(s) 158, 403
BmsI GCATC 2 cut(s) 69, 531
BpuMI CCSGG 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 112, 402
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 2 cut(s) 360, 467
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 112, 402
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 4 cut(s) 483, 487, 589, 624
BseYI CCCAGC 1 cut(s) 530
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 2 cut(s) 329, 364
BshNI GGYRCC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 4 cut(s) 105, 361, 402, 468
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 2 cut(s) 329, 364
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 4 cut(s) 153, 270, 416, 449
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 3 cut(s) 24, 330, 590
BspANI GGCC 2 cut(s) 329, 364
BspLI GGNNCC 2 cut(s) 118, 389
BspMAI CTGCAG 1 cut(s) 501
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 2 cut(s) 360, 467
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 2 cut(s) 360, 467
BssECI CCNNGG 2 cut(s) 112, 402
BssMI GATC 4 cut(s) 153, 270, 416, 449
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 4 cut(s) 217, 465, 469, 473
BstDEI CTNAG 2 cut(s) 410, 585
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 184
BstH2I RGCGCY 2 cut(s) 638, 736
BstHHI GCGC 3 cut(s) 616, 637, 735
BstKTI GATC 4 cut(s) 156, 273, 419, 452
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 4 cut(s) 153, 270, 416, 449
BstMWI GCNNNNNNNGC 4 cut(s) 225, 285, 586, 632
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 156, 401
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 4 cut(s) 483, 487, 589, 624
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 2 cut(s) 329, 364
BtgI CCRYGG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 2 cut(s) 506, 659
BtsIMutI CAGTG 2 cut(s) 506, 659
Cac8I GCNNGC 4 cut(s) 217, 465, 469, 473
CaiI CAGNNNCTG 1 cut(s) 637
CfoI GCGC 3 cut(s) 616, 637, 735
Cfr10I RCCGGY 2 cut(s) 360, 467
Cfr13I GGNCC 2 cut(s) 363, 441
Csp6I GTAC 2 cut(s) 117, 601
CviAII CATG 7 cut(s) 68, 113, 242, 523, 611, 643, 656
CviQI GTAC 2 cut(s) 117, 601
DdeI CTNAG 2 cut(s) 410, 585
DpnI GATC 4 cut(s) 155, 272, 418, 451
DpnII GATC 4 cut(s) 153, 270, 416, 449
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 441
Eco47III AGCGCT 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 1 cut(s) 279
FatI CATG 7 cut(s) 67, 112, 241, 522, 610, 642, 655
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
FspBI CTAG 3 cut(s) 189, 483, 736
GlaI GCGC 3 cut(s) 615, 636, 734
GluI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
GsaI CCCAGC 1 cut(s) 534
HaeII RGCGCY 2 cut(s) 638, 736
HaeIII GGCC 2 cut(s) 329, 364
HapII CCGG 4 cut(s) 105, 361, 402, 468
HhaI GCGC 3 cut(s) 616, 637, 735
Hin1II CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
Hin6I GCGC 3 cut(s) 614, 635, 733
HinP1I GCGC 3 cut(s) 614, 635, 733
HinfI GANTC 2 cut(s) 108, 708
HpaII CCGG 4 cut(s) 105, 361, 402, 468
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 4 cut(s) 6, 102, 444, 550
Hpy188I TCNGA 4 cut(s) 65, 83, 145, 707
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 4 cut(s) 6, 102, 444, 550
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 3 cut(s) 133, 552, 620
HpyCH4V TGCA 3 cut(s) 475, 499, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 285, 586, 632
HpyF3I CTNAG 2 cut(s) 410, 585
HpySE526I ACGT 3 cut(s) 133, 552, 620
Hsp92II CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
HspAI GCGC 3 cut(s) 614, 635, 733
KpnI GGTACC 1 cut(s) 120
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
Kzo9I GATC 4 cut(s) 153, 270, 416, 449
LmnI GCTCC 3 cut(s) 83, 337, 406
Lsp1109I GCAGC 4 cut(s) 483, 487, 589, 624
LweI GCATC 2 cut(s) 69, 531
MaeI CTAG 3 cut(s) 189, 483, 736
MaeII ACGT 3 cut(s) 133, 552, 620
MalI GATC 4 cut(s) 155, 272, 418, 451
MbiI CCGCTC 1 cut(s) 332
MboI GATC 4 cut(s) 153, 270, 416, 449
MboII GAAGA 6 cut(s) 158, 426, 644, 691, 694, 706
MflI RGATCY 1 cut(s) 416
MluCI AATT 3 cut(s) 183, 247, 570
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 5 cut(s) 258, 319, 486, 499, 528
MreI CGCCGGCG 1 cut(s) 467
MroNI GCCGGC 1 cut(s) 467
MseI TTAA 2 cut(s) 422, 569
MspI CCGG 4 cut(s) 105, 361, 402, 468
MspR9I CCNGG 2 cut(s) 158, 403
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 225, 285, 586, 632
NaeI GCCGGC 1 cut(s) 469
NciI CCSGG 1 cut(s) 403
NcoI CCATGG 1 cut(s) 112
NdeII GATC 4 cut(s) 153, 270, 416, 449
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
NlaIV GGNNCC 2 cut(s) 118, 389
PaeR7I CTCGAG 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 108, 708
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 6 cut(s) 331, 477, 498, 579, 591, 639
Ppu21I YACGTR 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 118, 389
PspPI GGNCC 2 cut(s) 363, 441
PspXI VCTCGAGB 1 cut(s) 490
PstI CTGCAG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 637
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 2 cut(s) 118, 602
RsaNI GTAC 2 cut(s) 117, 601
SaqAI TTAA 2 cut(s) 422, 569
SatI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
Sau3AI GATC 4 cut(s) 153, 270, 416, 449
Sau96I GGNCC 2 cut(s) 363, 441
ScrFI CCNGG 2 cut(s) 158, 403
SfaNI GCATC 2 cut(s) 69, 531
SfcI CTRYAG 1 cut(s) 497
Sfr274I CTCGAG 1 cut(s) 490
SgrAI CRCCGGYG 1 cut(s) 467
SinI GGWCC 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 3 cut(s) 183, 247, 570
SsiI CCGC 3 cut(s) 24, 330, 590
SspMI CTAG 3 cut(s) 189, 483, 736
StyD4I CCNGG 2 cut(s) 156, 401
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 3 cut(s) 136, 555, 623
TaqI TCGA 1 cut(s) 491
TasI AATT 3 cut(s) 183, 247, 570
TatI WGTACW 1 cut(s) 600
TauI GCSGC 2 cut(s) 332, 592
TfiI GAWTC 2 cut(s) 108, 708
Tru1I TTAA 2 cut(s) 422, 569
Tru9I TTAA 2 cut(s) 422, 569
TscAI CASTG 2 cut(s) 506, 666
TseI GCWGC 4 cut(s) 475, 496, 577, 637
TspDTI ATGAA 5 cut(s) 138, 195, 230, 599, 644
TspRI CASTG 2 cut(s) 506, 666
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 183
XbaI TCTAGA 1 cut(s) 482
XhoI CTCGAG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 3 cut(s) 189, 483, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.