Rh5DG189000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011913
Physical Location & Seq
Reverse (-)
20972652 .. 20976621
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG189000.1

Sequence Viewer

Length: 558 bp
ATGGCCTCCGCTTGCGTCAACAACATCGGCATGTCGCCGGAGAATTTCGCGCCGGCGACCTACCCCTCCTACGGCTGGCTCAGCCCGAGAGTCTCCTTCAGCTGCGATAACACCGGCGATGGTGGCCGGCTTCCCGGAGCTAAGTCCTCTTCTGCGGCGAAGAATCAACCGGAAGGTCCAGATCCGGAGCTTTCTGGAGGAGAGTTCGAGTTCCGGCTGGAAGATCCGGTCGCCATGCTGACCGCCGATGAGCTCTTCTCCGGCGGGAAGCTCATGCCGCTCCACATCTTCTCCGTCAAACCTCCCGTCAACGAGCCCTCGTCTTCCGAGATCAGATCGCCGGAGACGACTAAGTACCGCCGGAGACAGGAGATTTCTGTTTCTGACCCATTGGATGATTGCCCTTACAAATTGATTTGTGATTCCCCACCACCAATTCTTAAAATTGACTTCGTATGGTACAAGCCATTATGGTGGCAAAGGATGCCAAGAGCCCAAGATATCGTGCTAGCCAAACCTATGATGGGGAAGGCTAATAGGGTTATACTAGTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

5.73

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56020 AT1G79060 AT3G12970
fragaria_vesca FvH4_3g16010
malus_domestica MD05G1215900.v1.1 MD10G1198500.v1.1
prunus_persica Prupe.4G143300_v2.0.a1
pyrus_communis pycom05g19860 pycom10g17120
rosa_chinensis RchiOBHm_Chr5g0026971
rosa_laevigata RLG00000032974
rosa_multiflora Rmu_sc0002742.1_g000001
rosa_roxburghii Rroxscaffold_1G00052510
rosa_rugosa Rorug05G0096400
rosa_samantha Rh5AG189800 Rh5BG187300 Rh5CG207000 Rh5DG189000
rosa_wichuraiana Rw5G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 280
AccII CGCG 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 6 cut(s) 9, 155, 243, 264, 278, 358
AclWI GGATC 2 cut(s) 176, 218
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 2 cut(s) 356, 461
AfiI CCNNNNNNNGG 4 cut(s) 71, 75, 367, 524
AhlI ACTAGT 1 cut(s) 547
AluBI AGCT 5 cut(s) 102, 140, 190, 253, 271
AluI AGCT 5 cut(s) 102, 140, 190, 253, 271
Alw21I GWGCWC 2 cut(s) 255, 555
Alw26I GTCTC 3 cut(s) 97, 338, 358
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 2 cut(s) 176, 218
Ama87I CYCGRG 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 2 cut(s) 3, 124
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 135
AsuNHI GCTAGC 1 cut(s) 508
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 555
BanII GRGCYC 3 cut(s) 255, 318, 496
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 255, 555
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 113, 517
BceAI ACGGC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 97, 338, 358
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 3 cut(s) 509, 548, 556
BisI GCNGC 3 cut(s) 103, 156, 278
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 3 cut(s) 104, 157, 279
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 474
BmtI GCTAGC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 135
BsaWI WCCGGW 3 cut(s) 169, 184, 226
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 75, 367, 524
Bse118I RCCGGY 3 cut(s) 52, 113, 126
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 2 cut(s) 400, 489
BseLI CCNNNNNNNGG 4 cut(s) 71, 75, 367, 524
BseMII CTCAG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 5, 126
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 2 cut(s) 255, 555
BsiHKCI CYCGRG 1 cut(s) 85
BslI CCNNNNNNNGG 4 cut(s) 71, 75, 367, 524
BsmAI GTCTC 3 cut(s) 97, 338, 358
BsmBI CGTCTC 1 cut(s) 338
BsnI GGCC 2 cut(s) 5, 126
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 255, 318, 496, 555
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 4 cut(s) 181, 223, 330, 335
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 6 cut(s) 9, 155, 243, 264, 278, 358
BspANI GGCC 2 cut(s) 5, 126
BspCNI CTCAG 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 2 cut(s) 176, 218
BspQI GCTCTTC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 280
BsrFI RCCGGY 3 cut(s) 52, 113, 126
BssAI RCCGGY 3 cut(s) 52, 113, 126
BssMI GATC 4 cut(s) 181, 223, 330, 335
Bst6I CTCTTC 2 cut(s) 154, 260
BstAPI GCANNNNNTGC 1 cut(s) 484
BstC8I GCNNGC 5 cut(s) 13, 54, 77, 128, 510
BstDEI CTNAG 3 cut(s) 80, 141, 351
BstF5I GGATG 2 cut(s) 400, 489
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 4 cut(s) 184, 226, 333, 338
BstMAI GTCTC 3 cut(s) 97, 338, 358
BstMBI GATC 4 cut(s) 181, 223, 330, 335
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 4 cut(s) 81, 123, 277, 484
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 2 cut(s) 181, 223
BstXI CCANNNNNNTGG 1 cut(s) 474
BstYI RGATCY 2 cut(s) 181, 223
BsuRI GGCC 2 cut(s) 5, 126
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 400, 489
Cac8I GCNNGC 5 cut(s) 13, 54, 77, 128, 510
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 3 cut(s) 52, 113, 126
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 355, 460
CviAII CATG 3 cut(s) 31, 235, 274
CviQI GTAC 2 cut(s) 355, 460
DdeI CTNAG 3 cut(s) 80, 141, 351
DpnI GATC 4 cut(s) 183, 225, 332, 337
DpnII GATC 4 cut(s) 181, 223, 330, 335
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 154, 260
EarI CTCTTC 2 cut(s) 154, 260
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 3 cut(s) 255, 318, 496
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 253
EcoRV GATATC 1 cut(s) 502
EcoT38I GRGCYC 3 cut(s) 255, 318, 496
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 3 cut(s) 34, 238, 277
FaiI YATR 7 cut(s) 32, 236, 275, 457, 472, 521, 545
FatI CATG 3 cut(s) 30, 234, 273
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 103, 156, 278
FokI GGATG 2 cut(s) 407, 496
FriOI GRGCYC 3 cut(s) 255, 318, 496
Fsp4HI GCNGC 3 cut(s) 103, 156, 278
FspBI CTAG 3 cut(s) 509, 548, 556
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 103, 156, 278
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 5, 126
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 34, 238, 277
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 2 cut(s) 19, 310
HindII GTYRAC 2 cut(s) 19, 310
HinfI GANTC 3 cut(s) 90, 163, 422
Hpy166II GTNNAC 3 cut(s) 19, 310, 553
Hpy188I TCNGA 3 cut(s) 328, 335, 385
Hpy188III TCNNGA 3 cut(s) 179, 185, 195
Hpy8I GTNNAC 3 cut(s) 19, 310, 553
HpyAV CCTTC 3 cut(s) 106, 167, 523
HpyCH4V TGCA 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 123, 277, 484
HpyF3I CTNAG 3 cut(s) 80, 141, 351
Hsp92II CATG 3 cut(s) 34, 238, 277
HspAI GCGC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 184
KroI GCCGGC 2 cut(s) 52, 126
KroNI GCCGGC 2 cut(s) 54, 128
Kzo9I GATC 4 cut(s) 181, 223, 330, 335
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 3 cut(s) 137, 187, 285
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 474
MaeI CTAG 3 cut(s) 509, 548, 556
MalI GATC 4 cut(s) 183, 225, 332, 337
MbiI CCGCTC 1 cut(s) 280
MboI GATC 4 cut(s) 181, 223, 330, 335
MboII GAAGA 6 cut(s) 141, 172, 233, 247, 280, 315
MflI RGATCY 2 cut(s) 181, 223
MhlI GDGCHC 4 cut(s) 255, 318, 496, 555
MluCI AATT 4 cut(s) 43, 410, 435, 444
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 6 cut(s) 16, 76, 157, 191, 312, 328
MreI CGCCGGCG 1 cut(s) 52
MroI TCCGGA 1 cut(s) 184
MroNI GCCGGC 2 cut(s) 52, 126
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 2 cut(s) 29, 472
MspA1I CMGCKG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 81, 123, 277, 484
NaeI GCCGGC 2 cut(s) 54, 128
NciI CCSGG 1 cut(s) 135
NdeII GATC 4 cut(s) 181, 223, 330, 335
NgoMIV GCCGGC 2 cut(s) 52, 126
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 3 cut(s) 34, 238, 277
NspI RCATGY 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PdiI GCCGGC 2 cut(s) 54, 128
PfeI GAWTC 2 cut(s) 163, 422
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 3 cut(s) 104, 157, 279
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 2 cut(s) 181, 223
PvuII CAGCTG 1 cut(s) 102
RsaI GTAC 2 cut(s) 356, 461
RsaNI GTAC 2 cut(s) 355, 460
RseI CAYNNNNRTG 2 cut(s) 29, 472
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 103, 156, 278
Sau3AI GATC 4 cut(s) 181, 223, 330, 335
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 4 cut(s) 255, 318, 496, 555
SetI ASST 9 cut(s) 62, 104, 142, 178, 192, 255, 273, 304, 520
SfaNI GCATC 1 cut(s) 474
SgrAI CRCCGGYG 2 cut(s) 52, 113
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 29, 472
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 4 cut(s) 43, 410, 435, 444
SsiI CCGC 6 cut(s) 9, 155, 243, 264, 278, 358
SspMI CTAG 3 cut(s) 509, 548, 556
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 133
TaqI TCGA 1 cut(s) 207
TasI AATT 4 cut(s) 43, 410, 435, 444
TauI GCSGC 2 cut(s) 158, 280
TfiI GAWTC 2 cut(s) 163, 422
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseI GCWGC 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 283
VneI GTGCAC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XspI CTAG 3 cut(s) 509, 548, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.