AT3G12970

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011913
Physical Location & Seq
Reverse (-)
4140878 .. 4142548
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12970.1

Sequence Viewer

Length: 1146 bp
ATGGCGTCGGGTTGCGTTAAAAATGTTGGTACCTCGCCGAGTCACTCATGGACGAGCTCCAAAATGTCATTGACCCGTGAATCTCAACCGTTGGCCCCAGCGTTAGAAAACGAAGATCCTGTTGACGACTTTGAGTTTCTACTCGAAGATCCCGTCACAATGCTATCCGCCGACGAGCTTTTCTCCGACGGAAAGCTTGTCCCGCTTAAGTTTTCTGGCGTAACTTATCCGGAAGAGAAGCCTATAACGTCGGTGGTTCATACGGCGGTGAAACCATGCCGAAGATTGGAAATGGAGATCTCCGGCGTCGTCGATCCTTATCTCTTCTCTCCGAGAGCTCCTCGTTGCACCGTGAGATGGCGTGAGCTTTTAGGTCTTAAGAGACTCGCCAAAACGCAACAAGAAGCGTCAGCGTCGTCCTCGTCGCGTTTGTCTTCTTCTTCTCCAAACCCCAAAACGGCATCGTTTAGACATTTTCTCAACCGGAGTTCTAAATCTACCGCTCAACAACCGTCTCATCCGCCGCCGGGAAAAGACTCAGATATCTTGGAGTCATCGTCAACGTCTATCTCCTCTTCACGTCTCTCTCTTTCGTCGTCTTCTTCCTCCGGTCACGAGCTAGACGACCTTCCAAGACTATCTTTAGATCTCGACAACAAACCCGGAACACCAAACCCGTTCGCTCGGTCACGTGCCCACCACCACCACCACTTGCGTAACCAAAACCAACCAAGAAAGCCACGACGTCACACACAGGTTGATGAATCAACAGAGAGTAGTATTGAGTCGAGAGTAATGACGGTGACGGCGGATAGTCCGAGACTCAATGCTTCGGGGAAGATCGTGTTTCATGGACTCGAGAGAAGCTCAAGCAGTCCCGGTAACTTCACTGGAGGACCAAGAATGAAGCTTCACCATGGAATGCCGAGATCTCACTCAGCTAATGTCAGAATCACTCCTGTTCTCAATGTTCCTGTCTCTTCTCTCCGTAGCGGGCCCAAATCAGGCCTCTTTTTTGGCCAGCTTTTCGCTTCTTCTTCTTCAGCTTCATCGTCTTCGTCGTCTGGAAACAGAGCACAGTTGCAGAGCAATAACATCAAGAACCGTACCAATCGAAGCAGACTTGAACCGACAAGCGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

41.51

Weight (kDa)

9.87

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56020 AT1G79060 AT3G12970
fragaria_vesca FvH4_3g16010
malus_domestica MD05G1215900.v1.1 MD10G1198500.v1.1
prunus_persica Prupe.4G143300_v2.0.a1
pyrus_communis pycom05g19860 pycom10g17120
rosa_chinensis RchiOBHm_Chr5g0026971
rosa_laevigata RLG00000032974
rosa_multiflora Rmu_sc0002742.1_g000001
rosa_roxburghii Rroxscaffold_1G00052510
rosa_rugosa Rorug05G0096400
rosa_samantha Rh5AG189800 Rh5BG187300 Rh5CG207000 Rh5DG189000
rosa_wichuraiana Rw5G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 748
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 503
AccII CGCG 1 cut(s) 427
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 8 cut(s) 168, 203, 266, 501, 521, 524, 809, 993
AclWI GGATC 3 cut(s) 110, 143, 308
AcoI YGGCCR 1 cut(s) 1018
AcuI CTGAAG 1 cut(s) 1026
AcvI CACGTG 1 cut(s) 692
AcyI GRCGYC 3 cut(s) 5, 306, 745
AfaI GTAC 2 cut(s) 31, 1108
AfiI CCNNNNNNNGG 5 cut(s) 286, 357, 457, 527, 1004
AflII CTTAAG 2 cut(s) 206, 377
AgsI TTSAA 1 cut(s) 1127
AjiI CACGTC 1 cut(s) 581
Alw21I GWGCWC 3 cut(s) 59, 340, 1078
Alw26I GTCTC 5 cut(s) 376, 519, 587, 814, 982
AlwI GGATC 3 cut(s) 110, 143, 308
Ama87I CYCGRG 1 cut(s) 857
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 4 cut(s) 93, 995, 1006, 1018
ApaI GGGCCC 1 cut(s) 999
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 4 cut(s) 94, 896, 995, 996
AsuC2I CCSGG 3 cut(s) 528, 663, 879
AsuHPI GGTGA 3 cut(s) 280, 814, 905
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 1 cut(s) 896
BaeGI GKGCMC 2 cut(s) 697, 999
BalI TGGCCA 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 3 cut(s) 59, 340, 999
BauI CACGAG 1 cut(s) 614
BbrPI CACGTG 1 cut(s) 692
BbsI GAAGAC 3 cut(s) 426, 591, 1047
Bbv12I GWGCWC 3 cut(s) 59, 340, 1078
BccI CCATC 1 cut(s) 351
BceAI ACGGC 3 cut(s) 279, 474, 822
BcnI CCSGG 3 cut(s) 528, 663, 879
BcoDI GTCTC 5 cut(s) 376, 519, 587, 814, 982
BfaI CTAG 1 cut(s) 620
BfrI CTTAAG 2 cut(s) 206, 377
BglII AGATCT 3 cut(s) 297, 646, 929
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 3 cut(s) 528, 663, 879
Bme18I GGWCC 1 cut(s) 896
BmeT110I CYCGRG 1 cut(s) 857
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 4 cut(s) 94, 896, 995, 996
BmiI GGNNCC 3 cut(s) 31, 96, 997
BmrFI CCNGG 3 cut(s) 528, 663, 879
BmsI GCATC 1 cut(s) 470
BpiI GAAGAC 3 cut(s) 426, 591, 1047
BplI GAGNNNNNCTC 6 cut(s) 167, 199, 325, 357, 851, 883
BpmI CTGGAG 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 853
BpuMI CCSGG 3 cut(s) 528, 663, 879
BsaAI YACGTR 1 cut(s) 692
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 3 cut(s) 5, 306, 745
BsaJI CCNNGG 1 cut(s) 916
BsaWI WCCGGW 3 cut(s) 229, 483, 608
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 5 cut(s) 286, 357, 457, 527, 1004
Bse1I ACTGG 1 cut(s) 895
Bse8I GATNNNNATC 1 cut(s) 318
BseAI TCCGGA 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 916
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 5 cut(s) 286, 357, 457, 527, 1004
BseMII CTCAG 2 cut(s) 552, 951
BseNI ACTGG 1 cut(s) 895
BseRI GAGGAG 2 cut(s) 330, 562
BseSI GKGCMC 2 cut(s) 697, 999
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 4 cut(s) 95, 997, 1008, 1020
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 3 cut(s) 59, 340, 1078
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 7 cut(s) 230, 303, 484, 527, 609, 663, 879
BslFI GGGAC 2 cut(s) 185, 861
BslI CCNNNNNNNGG 5 cut(s) 286, 357, 457, 527, 1004
BsmAI GTCTC 5 cut(s) 376, 519, 587, 814, 982
BsmBI CGTCTC 2 cut(s) 519, 587
BsmFI GGGAC 2 cut(s) 185, 861
BsmI GAATGC 1 cut(s) 927
BsnI GGCC 4 cut(s) 95, 997, 1008, 1020
BsoBI CYCGRG 1 cut(s) 857
Bsp120I GGGCCC 1 cut(s) 995
Bsp1286I GDGCHC 5 cut(s) 59, 340, 697, 999, 1078
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 8 cut(s) 168, 203, 266, 501, 521, 524, 809, 993
BspANI GGCC 4 cut(s) 95, 997, 1008, 1020
BspCNI CTCAG 2 cut(s) 551, 950
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 31, 96, 997
BspPI GGATC 3 cut(s) 110, 143, 308
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 2 cut(s) 206, 377
BsrBI CCGCTC 1 cut(s) 503
BsrI ACTGG 1 cut(s) 895
BssECI CCNNGG 1 cut(s) 916
BssMI GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
BssNI GRCGYC 3 cut(s) 5, 306, 745
BssSI CACGAG 1 cut(s) 614
BssT1I CCWWGG 1 cut(s) 916
Bst2BI CACGAG 1 cut(s) 614
Bst4CI ACNGT 6 cut(s) 90, 352, 513, 802, 1080, 1106
Bst6I CTCTTC 4 cut(s) 228, 329, 580, 985
BstACI GRCGYC 3 cut(s) 5, 306, 745
BstAFI CTTAAG 2 cut(s) 206, 377
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 995, 1022
BstDEI CTNAG 2 cut(s) 538, 937
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 7 cut(s) 118, 151, 300, 316, 649, 843, 932
BstMAI GTCTC 5 cut(s) 376, 519, 587, 814, 982
BstMBI GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSCI CCNGG 3 cut(s) 526, 661, 877
BstSLI GKGCMC 2 cut(s) 697, 999
BstUI CGCG 1 cut(s) 427
BstV2I GAAGAC 3 cut(s) 426, 591, 1047
BstX2I RGATCY 5 cut(s) 115, 148, 297, 646, 929
BstYI RGATCY 5 cut(s) 115, 148, 297, 646, 929
BsuRI GGCC 4 cut(s) 95, 997, 1008, 1020
BtgI CCRYGG 1 cut(s) 916
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 888
Cac8I GCNNGC 2 cut(s) 995, 1022
Cfr13I GGNCC 4 cut(s) 94, 896, 995, 996
CseI GACGC 3 cut(s) 295, 396, 402
Csp6I GTAC 2 cut(s) 30, 1107
CviAII CATG 4 cut(s) 48, 276, 851, 917
CviQI GTAC 2 cut(s) 30, 1107
DdeI CTNAG 2 cut(s) 538, 937
DpnI GATC 7 cut(s) 117, 150, 299, 315, 648, 842, 931
DpnII GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 4 cut(s) 228, 329, 580, 985
EarI CTCTTC 4 cut(s) 228, 329, 580, 985
EciI GGCGGA 3 cut(s) 157, 510, 824
Ecl136II GAGCTC 2 cut(s) 57, 338
Eco130I CCWWGG 1 cut(s) 916
Eco147I AGGCCT 1 cut(s) 1008
Eco24I GRGCYC 3 cut(s) 59, 340, 999
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 896
Eco53kI GAGCTC 2 cut(s) 57, 338
Eco57I CTGAAG 1 cut(s) 1026
Eco72I CACGTG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 857
EcoICRI GAGCTC 2 cut(s) 57, 338
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 916
EcoT38I GRGCYC 3 cut(s) 59, 340, 999
ErhI CCWWGG 1 cut(s) 916
Esp3I CGTCTC 2 cut(s) 519, 587
FaeI CATG 4 cut(s) 51, 279, 854, 920
FaiI YATR 6 cut(s) 49, 245, 261, 277, 852, 918
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FaqI GGGAC 2 cut(s) 185, 861
FatI CATG 4 cut(s) 47, 275, 850, 916
FauI CCCGC 2 cut(s) 210, 986
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 1 cut(s) 504
FriOI GRGCYC 3 cut(s) 59, 340, 999
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 1 cut(s) 620
GluI GCNGC 1 cut(s) 524
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 4 cut(s) 95, 997, 1008, 1020
HapII CCGG 7 cut(s) 230, 303, 484, 527, 609, 663, 879
HgaI GACGC 3 cut(s) 295, 396, 402
Hin1I GRCGYC 3 cut(s) 5, 306, 745
Hin1II CATG 4 cut(s) 51, 279, 854, 920
HincII GTYRAC 2 cut(s) 124, 561
HindII GTYRAC 2 cut(s) 124, 561
HindIII AAGCTT 2 cut(s) 194, 908
HpaII CCGG 7 cut(s) 230, 303, 484, 527, 609, 663, 879
HphI GGTGA 3 cut(s) 280, 814, 905
Hpy166II GTNNAC 2 cut(s) 124, 561
Hpy188I TCNGA 5 cut(s) 187, 333, 541, 819, 950
Hpy188III TCNNGA 7 cut(s) 230, 614, 650, 789, 859, 1065, 1099
Hpy8I GTNNAC 2 cut(s) 124, 561
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 6 cut(s) 90, 352, 513, 802, 1080, 1106
HpyCH4IV ACGT 5 cut(s) 248, 563, 580, 691, 745
HpyCH4V TGCA 2 cut(s) 348, 1084
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 538, 937
HpySE526I ACGT 5 cut(s) 248, 563, 580, 691, 745
Hsp92I GRCGYC 3 cut(s) 5, 306, 745
Hsp92II CATG 4 cut(s) 51, 279, 854, 920
Kpn2I TCCGGA 1 cut(s) 229
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
LmnI GCTCC 2 cut(s) 62, 343
LweI GCATC 1 cut(s) 470
MaeI CTAG 1 cut(s) 620
MaeII ACGT 5 cut(s) 248, 563, 580, 691, 745
MaeIII GTNAC 9 cut(s) 41, 154, 220, 611, 687, 716, 746, 802, 881
MalI GATC 7 cut(s) 117, 150, 299, 315, 648, 842, 931
MbiI CCGCTC 1 cut(s) 503
MboI GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
MflI RGATCY 5 cut(s) 115, 148, 297, 646, 929
MhlI GDGCHC 5 cut(s) 59, 340, 697, 999, 1078
MlsI TGGCCA 1 cut(s) 1020
MluNI TGGCCA 1 cut(s) 1020
MlyI GAGTC 7 cut(s) 49, 378, 530, 560, 794, 816, 849
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 43, 351, 430, 583, 616, 887, 1019
Mox20I TGGCCA 1 cut(s) 1020
MroI TCCGGA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 1020
MseI TTAA 3 cut(s) 18, 207, 378
Msp20I TGGCCA 1 cut(s) 1020
MspCI CTTAAG 2 cut(s) 206, 377
MspI CCGG 7 cut(s) 230, 303, 484, 527, 609, 663, 879
MspR9I CCNGG 3 cut(s) 528, 663, 879
Mva1269I GAATGC 1 cut(s) 927
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 3 cut(s) 528, 663, 879
NcoI CCATGG 1 cut(s) 916
NdeII GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
NlaIII CATG 4 cut(s) 51, 279, 854, 920
NlaIV GGNNCC 3 cut(s) 31, 96, 997
NmeAIII GCCGAG 2 cut(s) 63, 951
NmuCI GTSAC 6 cut(s) 41, 154, 611, 687, 746, 802
PaeR7I CTCGAG 1 cut(s) 857
PceI AGGCCT 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 621, 1058
PctI GAATGC 1 cut(s) 927
PfeI GAWTC 3 cut(s) 80, 764, 951
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 7 cut(s) 48, 378, 530, 559, 793, 816, 849
PmaCI CACGTG 1 cut(s) 692
PmlI CACGTG 1 cut(s) 692
PpsI GAGTC 7 cut(s) 48, 378, 530, 559, 793, 816, 849
Ppu21I YACGTR 1 cut(s) 692
Psp124BI GAGCTC 2 cut(s) 59, 340
PspCI CACGTG 1 cut(s) 692
PspFI CCCAGC 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 31, 96, 997
PspOMI GGGCCC 1 cut(s) 995
PspPI GGNCC 4 cut(s) 94, 896, 995, 996
PsuI RGATCY 5 cut(s) 115, 148, 297, 646, 929
RsaI GTAC 2 cut(s) 31, 1108
RsaNI GTAC 2 cut(s) 30, 1107
SacI GAGCTC 2 cut(s) 59, 340
SaqAI TTAA 3 cut(s) 18, 207, 378
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 7 cut(s) 115, 148, 297, 313, 646, 840, 929
Sau96I GGNCC 4 cut(s) 94, 896, 995, 996
SchI GAGTC 7 cut(s) 49, 378, 530, 560, 794, 816, 849
ScrFI CCNGG 3 cut(s) 528, 663, 879
SduI GDGCHC 5 cut(s) 59, 340, 697, 999, 1078
SfaNI GCATC 1 cut(s) 470
Sfr274I CTCGAG 1 cut(s) 857
SinI GGWCC 1 cut(s) 896
SlaI CTCGAG 1 cut(s) 857
SmlI CTYRAG 4 cut(s) 206, 377, 857, 868
SmoI CTYRAG 4 cut(s) 206, 377, 857, 868
SseBI AGGCCT 1 cut(s) 1008
SsiI CCGC 8 cut(s) 168, 203, 266, 501, 521, 524, 809, 993
SspMI CTAG 1 cut(s) 620
SstI GAGCTC 2 cut(s) 59, 340
StuI AGGCCT 1 cut(s) 1008
StyD4I CCNGG 3 cut(s) 526, 661, 877
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 6 cut(s) 90, 352, 513, 802, 1080, 1106
TaiI ACGT 5 cut(s) 251, 566, 583, 694, 748
TaqI TCGA 6 cut(s) 144, 312, 651, 788, 858, 1114
TaqII GACCGA 1 cut(s) 675
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 3 cut(s) 80, 764, 951
Tru1I TTAA 3 cut(s) 18, 207, 378
Tru9I TTAA 3 cut(s) 18, 207, 378
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 6 cut(s) 41, 154, 611, 687, 746, 802
Tsp45I GTSAC 6 cut(s) 41, 154, 611, 687, 746, 802
TspDTI ATGAA 5 cut(s) 248, 777, 839, 920, 1038
TspGWI ACGGA 2 cut(s) 204, 977
TspRI CASTG 1 cut(s) 895
Vha464I CTTAAG 2 cut(s) 206, 377
VpaK11BI GGWCC 1 cut(s) 896
XhoI CTCGAG 1 cut(s) 857
XspI CTAG 1 cut(s) 620
ZraI GACGTC 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.