AT1G79060

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011913
Physical Location & Seq
Forward (+)
29741728 .. 29743766
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79060.1

Sequence Viewer

Length: 1191 bp
ATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGATTTTCCTACTTACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGACGACGGTGGTCGGAGTTCTGGATCCGTCGCATCGGAGATTCCGAAGGAGGAAACAGCAGTCGGAGCTGGTGATTTCGAGTTTAGGTTAGAGGAGGATCCAGTCGGAATGCTCCCAGCCGATGAGCTTTTCTCCGACGGTAAACTCGTGACGAAGCAGCAACAACAACAGACGACGGAGATCGGCGGGAAATGCAGGAGGATGGAAGTCGTGGAGATTGAGATCTCCGGGGGTGGCGATAATTGCTCGTTTTCTCCAAAGGCGCCACGGTGTTCAAGTAGATGGAGGGACTTGTTAGGACTCAAACGATTCTCTCAGAATAGCAGCAAATCCGCGTCGACTGCGACGACGACGACGACGAATCCGAGATCGTCAACTTCGTCGTTGAAACAGTTCTTGCATCGGAGCTCCAGGTCCTCGTCGTCCTCTTCAGATGCTTCGTTACTCATGAGTCTTCCTCTCCTCAAAGATTCCGATTCCGAATCTGTCTCTATATCCTCTTCTCGTATGTCTCTCTCCTCTTCCTCCTCTGGCCATGACCACGAAGATCTTCCAAGACTCTCTCTCGATGCAGAGAGACCTAACCAAAACCACATCATTAACCTCAACCACAATCTCACTGCGAATCCATTTGCTCCGGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAACCATTCAACATCAGGAACCGGAGGAGGAAGAGTTGGACGCAGTCCGATGCGACGTTCCGGTGGAGAAACATCAGCCATAATGAACAGAGGAGTCTCTGTAGACAGTCCAAGACTAAACTCTTCAGGTAAAATCGTGTTCCAGAATCTAGAACGAAGCTCAAGCAGTCCGAGTAGCTTCAATGGTGGAACAAGCGGGTATAGACACAGAGGAATGGAGAGATCGTATAGCTCAAACGTTAGGGTTACTCCAGTTTTGAACGTTCCCGTTTGCTCAATCAGAGGTGGTTCAGTAGTCTTTGGTCAGTTTTTCTCTTCCTCGTCATCTTCATCTTCGTCGCAGAACAATAGAACAGGGAACAACAACAATAATAGAGCGTCGTGTCACATCAGTAGAGGCCGTAACTCCACGGATCGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

42.51

Weight (kDa)

9.77

Isoelectric Point (pI)

68.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56020 AT1G79060 AT3G12970
fragaria_vesca FvH4_3g16010
malus_domestica MD05G1215900.v1.1 MD10G1198500.v1.1
prunus_persica Prupe.4G143300_v2.0.a1
pyrus_communis pycom05g19860 pycom10g17120
rosa_chinensis RchiOBHm_Chr5g0026971
rosa_laevigata RLG00000032974
rosa_multiflora Rmu_sc0002742.1_g000001
rosa_roxburghii Rroxscaffold_1G00052510
rosa_rugosa Rorug05G0096400
rosa_samantha Rh5AG189800 Rh5BG187300 Rh5CG207000 Rh5DG189000
rosa_wichuraiana Rw5G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 2 cut(s) 425, 870
AccII CGCG 1 cut(s) 422
AciI CCGC 3 cut(s) 273, 420, 963
AclI AACGTT 2 cut(s) 1005, 1029
AclWI GGATC 5 cut(s) 105, 118, 179, 192, 1188
AcoI YGGCCR 1 cut(s) 619
AcuI CTGAAG 2 cut(s) 501, 876
AcyI GRCGYC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 6 cut(s) 64, 363, 475, 777, 949, 1027
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 7 cut(s) 74, 155, 214, 495, 927, 945, 999
AluI AGCT 7 cut(s) 74, 155, 214, 495, 927, 945, 999
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 4 cut(s) 580, 603, 658, 868
AlwI GGATC 5 cut(s) 105, 118, 179, 192, 1188
AoxI GGCC 2 cut(s) 619, 1165
ApeKI GCWGC 2 cut(s) 244, 411
Asp700I GAANNNNTTC 2 cut(s) 479, 636
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 501
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 501
BalI TGGCCA 1 cut(s) 621
BamHI GGATCC 2 cut(s) 110, 184
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 497
BauI CACGAG 2 cut(s) 69, 233
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 256, 423
BccI CCATC 2 cut(s) 283, 363
BceAI ACGGC 2 cut(s) 69, 1152
BciT130I CCWGG 1 cut(s) 499
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 580, 603, 658, 868
BfaI CTAG 1 cut(s) 917
BfmI CTRYAG 1 cut(s) 867
BfoI RGCGCY 1 cut(s) 353
BglII AGATCT 2 cut(s) 309, 634
BisI GCNGC 2 cut(s) 245, 412
BlsI GCNGC 2 cut(s) 246, 413
Bme1390I CCNGG 2 cut(s) 316, 499
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 4 cut(s) 112, 186, 351, 787
BmrFI CCNGG 2 cut(s) 316, 499
BmsI GCATC 5 cut(s) 128, 496, 511, 646, 807
BoxI GACNNNNGTC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 533
BplI GAGNNNNNCTC 4 cut(s) 203, 235, 529, 561
BpmI CTGGAG 2 cut(s) 481, 1002
BpuEI CTTGAG 1 cut(s) 913
BpuMI CCSGG 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 3 cut(s) 315, 353, 1176
BsaWI WCCGGW 2 cut(s) 788, 827
BsaXI ACNNNNNCTCC 6 cut(s) 786, 816, 852, 882, 977, 1007
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 188, 1019
Bse8I GATNNNNATC 1 cut(s) 308
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 3 cut(s) 315, 353, 1176
BseGI GGATG 2 cut(s) 62, 294
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 50, 416
BseNI ACTGG 2 cut(s) 188, 1019
BseRI GAGGAG 6 cut(s) 194, 539, 595, 604, 807, 873
BseXI GCAGC 2 cut(s) 256, 423
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 2 cut(s) 621, 1167
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 4 cut(s) 315, 725, 789, 828
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 4 cut(s) 580, 603, 658, 868
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 2 cut(s) 621, 1167
Bso31I GGTCTC 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
BspACI CCGC 3 cut(s) 273, 420, 963
BspANI GGCC 2 cut(s) 621, 1167
BspCNI CTCAG 2 cut(s) 49, 415
BspFNI CGCG 1 cut(s) 422
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 4 cut(s) 112, 186, 351, 787
BspPI GGATC 5 cut(s) 105, 118, 179, 192, 1188
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 658
BsrI ACTGG 2 cut(s) 188, 1019
BssECI CCNNGG 3 cut(s) 315, 353, 1176
BssMI GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
BssNI GRCGYC 1 cut(s) 350
BssSI CACGAG 2 cut(s) 69, 233
Bst2BI CACGAG 2 cut(s) 69, 233
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 6 cut(s) 31, 95, 227, 357, 480, 875
Bst6I CTCTTC 6 cut(s) 520, 592, 613, 793, 895, 1087
BstACI GRCGYC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 36, 402
BstDSI CCRYGG 2 cut(s) 353, 1176
BstF5I GGATG 2 cut(s) 62, 294
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 8 cut(s) 113, 187, 270, 312, 458, 637, 992, 1183
BstMAI GTCTC 4 cut(s) 580, 603, 658, 868
BstMBI GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
BstMWI GCNNNNNNNGC 4 cut(s) 152, 279, 330, 428
BstNI CCWGG 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 314, 497
BstSFI CTRYAG 1 cut(s) 867
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 256, 423
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 4 cut(s) 110, 184, 309, 634
BstYI RGATCY 4 cut(s) 110, 184, 309, 634
BsuRI GGCC 2 cut(s) 621, 1167
BtgI CCRYGG 2 cut(s) 353, 1176
BtsCI GGATG 2 cut(s) 62, 294
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 1 cut(s) 705
CciI TCATGA 1 cut(s) 534
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 501
CseI GACGC 4 cut(s) 4, 411, 816, 1134
CviAII CATG 2 cut(s) 535, 623
DdeI CTNAG 2 cut(s) 36, 402
DinI GGCGCC 1 cut(s) 351
DpnI GATC 8 cut(s) 112, 186, 269, 311, 457, 636, 991, 1182
DpnII GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 6 cut(s) 520, 592, 613, 793, 895, 1087
EarI CTCTTC 6 cut(s) 520, 592, 613, 793, 895, 1087
Ecl136II GAGCTC 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 495
Eco57I CTGAAG 2 cut(s) 501, 876
EcoICRI GAGCTC 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 497
EgeI GGCGCC 1 cut(s) 351
EheI GGCGCC 1 cut(s) 351
FaeI CATG 2 cut(s) 538, 626
FaiI YATR 7 cut(s) 536, 581, 596, 624, 848, 969, 996
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 534, 622
FauI CCCGC 2 cut(s) 266, 956
FblI GTMKAC 2 cut(s) 425, 870
Fnu4HI GCNGC 2 cut(s) 245, 412
FokI GGATG 2 cut(s) 69, 301
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 245, 412
FspBI CTAG 1 cut(s) 917
GlaI GCGC 1 cut(s) 351
GluI GCNGC 2 cut(s) 245, 412
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 2 cut(s) 481, 1002
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 2 cut(s) 621, 1167
HapII CCGG 4 cut(s) 315, 725, 789, 828
HgaI GACGC 4 cut(s) 4, 411, 816, 1134
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 2 cut(s) 538, 626
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 3 cut(s) 19, 426, 462
HindII GTYRAC 3 cut(s) 19, 426, 462
HpaII CCGG 4 cut(s) 315, 725, 789, 828
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 6 cut(s) 19, 230, 426, 462, 769, 871
Hpy188III TCNNGA 8 cut(s) 38, 108, 235, 535, 653, 783, 910, 917
Hpy8I GTNNAC 6 cut(s) 19, 230, 426, 462, 769, 871
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 6 cut(s) 31, 95, 227, 357, 480, 875
HpyCH4IV ACGT 3 cut(s) 823, 1005, 1029
HpyCH4V TGCA 3 cut(s) 282, 487, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 279, 330, 428
HpyF3I CTNAG 2 cut(s) 36, 402
HpySE526I ACGT 3 cut(s) 823, 1005, 1029
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 2 cut(s) 538, 626
HspAI GCGC 1 cut(s) 350
KasI GGCGCC 1 cut(s) 349
Kzo9I GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
LmnI GCTCC 5 cut(s) 152, 204, 492, 500, 727
Lsp1109I GCAGC 2 cut(s) 256, 423
LweI GCATC 5 cut(s) 128, 496, 511, 646, 807
MaeI CTAG 1 cut(s) 917
MaeII ACGT 3 cut(s) 823, 1005, 1029
MaeIII GTNAC 7 cut(s) 25, 86, 235, 528, 1012, 1151, 1169
MalI GATC 8 cut(s) 112, 186, 269, 311, 457, 636, 991, 1182
MboI GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
MflI RGATCY 4 cut(s) 110, 184, 309, 634
MhlI GDGCHC 1 cut(s) 497
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 1 cut(s) 328
MluNI TGGCCA 1 cut(s) 621
Mly113I GGCGCC 1 cut(s) 350
MlyI GAGTC 4 cut(s) 381, 547, 639, 870
MmeI TCCRAC 5 cut(s) 80, 130, 172, 246, 784
Mox20I TGGCCA 1 cut(s) 621
MroXI GAANNNNTTC 2 cut(s) 479, 636
MscI TGGCCA 1 cut(s) 621
MseI TTAA 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 621
MspI CCGG 4 cut(s) 315, 725, 789, 828
MspR9I CCNGG 2 cut(s) 316, 499
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 4 cut(s) 152, 279, 330, 428
NarI GGCGCC 1 cut(s) 350
NciI CCSGG 1 cut(s) 316
NdeII GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
NlaIII CATG 2 cut(s) 538, 626
NlaIV GGNNCC 4 cut(s) 112, 186, 351, 787
NmuCI GTSAC 3 cut(s) 86, 235, 1151
PagI TCATGA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 7 cut(s) 128, 231, 431, 440, 443, 449, 464
PctI GAATGC 1 cut(s) 201
PdmI GAANNNNTTC 2 cut(s) 479, 636
PfeI GAWTC 9 cut(s) 127, 396, 448, 557, 563, 569, 712, 913, 1185
PflFI GACNNNGTC 1 cut(s) 810
PkrI GCNGC 2 cut(s) 246, 413
PleI GAGTC 4 cut(s) 381, 546, 639, 869
PluTI GGCGCC 1 cut(s) 353
PpsI GAGTC 4 cut(s) 381, 546, 639, 869
PpuMI RGGWCCY 1 cut(s) 501
PshAI GACNNNNGTC 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 497
Psp1406I AACGTT 2 cut(s) 1005, 1029
Psp5II RGGWCCY 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 4 cut(s) 112, 186, 351, 787
PspPI GGNCC 1 cut(s) 501
PspPPI RGGWCCY 1 cut(s) 501
PsuI RGATCY 4 cut(s) 110, 184, 309, 634
PsyI GACNNNGTC 1 cut(s) 810
SacI GAGCTC 1 cut(s) 497
SalI GTCGAC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 2 cut(s) 245, 412
Sau3AI GATC 8 cut(s) 110, 184, 267, 309, 455, 634, 989, 1180
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 4 cut(s) 381, 547, 639, 870
ScrFI CCNGG 2 cut(s) 316, 499
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 5 cut(s) 128, 496, 511, 646, 807
SfcI CTRYAG 1 cut(s) 867
SfoI GGCGCC 1 cut(s) 351
SinI GGWCC 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
Sse9I AATT 1 cut(s) 328
SsiI CCGC 3 cut(s) 273, 420, 963
SspDI GGCGCC 1 cut(s) 349
SspMI CTAG 1 cut(s) 917
SstI GAGCTC 1 cut(s) 497
StyD4I CCNGG 2 cut(s) 314, 497
TaaI ACNGT 6 cut(s) 31, 95, 227, 357, 480, 875
TaiI ACGT 3 cut(s) 826, 1008, 1032
TaqI TCGA 4 cut(s) 165, 425, 654, 1183
TasI AATT 1 cut(s) 328
TfiI GAWTC 9 cut(s) 127, 396, 448, 557, 563, 569, 712, 913, 1185
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 3 cut(s) 86, 235, 1151
TseI GCWGC 2 cut(s) 244, 411
Tsp45I GTSAC 3 cut(s) 86, 235, 1151
TspDTI ATGAA 2 cut(s) 866, 1086
TspGWI ACGGA 3 cut(s) 69, 103, 278
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 810
VpaK11BI GGWCC 1 cut(s) 501
XbaI TCTAGA 1 cut(s) 916
XmiI GTMKAC 2 cut(s) 425, 870
XmnI GAANNNNTTC 2 cut(s) 479, 636
XspI CTAG 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.