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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56020 AT1G79060 AT3G12970 |
| fragaria_vesca | FvH4_3g16010 |
| malus_domestica | MD05G1215900.v1.1 MD10G1198500.v1.1 |
| prunus_persica | Prupe.4G143300_v2.0.a1 |
| pyrus_communis | pycom05g19860 pycom10g17120 |
| rosa_chinensis | RchiOBHm_Chr5g0026971 |
| rosa_laevigata | RLG00000032974 |
| rosa_multiflora | Rmu_sc0002742.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00052510 |
| rosa_rugosa | Rorug05G0096400 |
| rosa_samantha | Rh5AG189800 Rh5BG187300 Rh5CG207000 Rh5DG189000 |
| rosa_wichuraiana | Rw5G017270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 732 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 991 |
| AccBSI | CCGCTC | 1 cut(s) | 1060 |
| AccII | CGCG | 7 cut(s) | 105, 503, 548, 679, 814, 1122, 1224 |
| AccIII | TCCGGA | 1 cut(s) | 193 |
| AclI | AACGTT | 1 cut(s) | 1101 |
| AclWI | GGATC | 3 cut(s) | 185, 227, 317 |
| AcoI | YGGCCR | 5 cut(s) | 360, 706, 1071, 1213, 1225 |
| AcuI | CTGAAG | 3 cut(s) | 82, 275, 581 |
| AcyI | GRCGYC | 1 cut(s) | 618 |
| AfaI | GTAC | 2 cut(s) | 404, 919 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 182, 808, 991, 1137 |
| AgsI | TTSAA | 2 cut(s) | 1024, 1042 |
| AjnI | CCWGG | 1 cut(s) | 1034 |
| Alw21I | GWGCWC | 5 cut(s) | 264, 453, 542, 584, 717 |
| Alw26I | GTCTC | 3 cut(s) | 165, 639, 670 |
| AlwI | GGATC | 3 cut(s) | 185, 227, 317 |
| Ama87I | CYCGRG | 4 cut(s) | 424, 802, 834, 1003 |
| Aor13HI | TCCGGA | 1 cut(s) | 193 |
| ApaI | GGGCCC | 1 cut(s) | 1035 |
| ApeKI | GCWGC | 2 cut(s) | 311, 1203 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 300, 332, 578, 610 |
| AseI | ATTAAT | 1 cut(s) | 386 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 566 |
| AspLEI | GCGC | 4 cut(s) | 128, 550, 681, 814 |
| AsuC2I | CCSGG | 4 cut(s) | 54, 374, 803, 804 |
| AsuHPI | GGTGA | 1 cut(s) | 758 |
| AsuII | TTCGAA | 1 cut(s) | 131 |
| AvaI | CYCGRG | 4 cut(s) | 424, 802, 834, 1003 |
| AvaII | GGWCC | 6 cut(s) | 185, 377, 397, 721, 1062, 1172 |
| BaeGI | GKGCMC | 1 cut(s) | 1035 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BanII | GRGCYC | 5 cut(s) | 264, 453, 542, 584, 1035 |
| BauI | CACGAG | 2 cut(s) | 710, 716 |
| BbsI | GAAGAC | 2 cut(s) | 693, 973 |
| Bbv12I | GWGCWC | 5 cut(s) | 264, 453, 542, 584, 717 |
| BbvI | GCAGC | 2 cut(s) | 298, 1215 |
| BccI | CCATC | 1 cut(s) | 69 |
| BceAI | ACGGC | 6 cut(s) | 43, 139, 375, 619, 746, 1216 |
| BciT130I | CCWGG | 1 cut(s) | 1036 |
| BclI | TGATCA | 1 cut(s) | 865 |
| BcnI | CCSGG | 4 cut(s) | 54, 374, 803, 804 |
| BcoDI | GTCTC | 3 cut(s) | 165, 639, 670 |
| BfaI | CTAG | 2 cut(s) | 87, 137 |
| BfmI | CTRYAG | 1 cut(s) | 1181 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BfuAI | ACCTGC | 1 cut(s) | 732 |
| BglII | AGATCT | 1 cut(s) | 198 |
| BisI | GCNGC | 9 cut(s) | 103, 142, 208, 287, 312, 861, 903, 1204, 1225 |
| BlsI | GCNGC | 9 cut(s) | 104, 143, 209, 288, 313, 862, 904, 1205, 1226 |
| Bme1390I | CCNGG | 5 cut(s) | 54, 374, 803, 804, 1036 |
| Bme18I | GGWCC | 6 cut(s) | 185, 377, 397, 721, 1062, 1172 |
| BmeT110I | CYCGRG | 4 cut(s) | 424, 802, 834, 1003 |
| BmiI | GGNNCC | 7 cut(s) | 57, 148, 378, 399, 423, 1033, 1173 |
| BmrFI | CCNGG | 5 cut(s) | 54, 374, 803, 804, 1036 |
| BpiI | GAAGAC | 2 cut(s) | 693, 973 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 986, 1018 |
| Bpu10I | CCTNAGC | 1 cut(s) | 626 |
| Bpu14I | TTCGAA | 1 cut(s) | 131 |
| BpuMI | CCSGG | 4 cut(s) | 54, 374, 803, 804 |
| BsaHI | GRCGYC | 1 cut(s) | 618 |
| BsaI | GGTCTC | 1 cut(s) | 670 |
| BsaWI | WCCGGW | 7 cut(s) | 63, 193, 235, 792, 1090, 1105, 1269 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 927, 957 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 182, 808, 991, 1137 |
| Bse118I | RCCGGY | 1 cut(s) | 526 |
| BseAI | TCCGGA | 1 cut(s) | 193 |
| BseBI | CCWGG | 1 cut(s) | 1036 |
| BseGI | GGATG | 3 cut(s) | 36, 80, 1233 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 182, 808, 991, 1137 |
| BseMII | CTCAG | 5 cut(s) | 71, 315, 617, 627, 1060 |
| BseRI | GAGGAG | 4 cut(s) | 289, 589, 682, 685 |
| BseSI | GKGCMC | 1 cut(s) | 1035 |
| BseXI | GCAGC | 2 cut(s) | 298, 1215 |
| BseYI | CCCAGC | 1 cut(s) | 113 |
| Bsh1236I | CGCG | 7 cut(s) | 105, 503, 548, 679, 814, 1122, 1224 |
| BsiHKAI | GWGCWC | 5 cut(s) | 264, 453, 542, 584, 717 |
| BsiHKCI | CYCGRG | 4 cut(s) | 424, 802, 834, 1003 |
| BslFI | GGGAC | 3 cut(s) | 94, 390, 894 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 182, 808, 991, 1137 |
| BsmAI | GTCTC | 3 cut(s) | 165, 639, 670 |
| BsmBI | CGTCTC | 1 cut(s) | 165 |
| BsmFI | GGGAC | 3 cut(s) | 94, 390, 894 |
| Bso31I | GGTCTC | 1 cut(s) | 670 |
| BsoBI | CYCGRG | 4 cut(s) | 424, 802, 834, 1003 |
| Bsp119I | TTCGAA | 1 cut(s) | 131 |
| Bsp120I | GGGCCC | 1 cut(s) | 1031 |
| Bsp1286I | GDGCHC | 6 cut(s) | 264, 453, 542, 584, 717, 1035 |
| Bsp13I | TCCGGA | 1 cut(s) | 193 |
| Bsp143I | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| BspCNI | CTCAG | 5 cut(s) | 72, 314, 618, 626, 1059 |
| BspEI | TCCGGA | 1 cut(s) | 193 |
| BspFNI | CGCG | 7 cut(s) | 105, 503, 548, 679, 814, 1122, 1224 |
| BspLI | GGNNCC | 7 cut(s) | 57, 148, 378, 399, 423, 1033, 1173 |
| BspMAI | CTGCAG | 1 cut(s) | 1185 |
| BspMI | ACCTGC | 1 cut(s) | 732 |
| BspPI | GGATC | 3 cut(s) | 185, 227, 317 |
| BspQI | GCTCTTC | 1 cut(s) | 500 |
| BspT104I | TTCGAA | 1 cut(s) | 131 |
| BspTNI | GGTCTC | 1 cut(s) | 670 |
| BsrBI | CCGCTC | 1 cut(s) | 1060 |
| BsrFI | RCCGGY | 1 cut(s) | 526 |
| BssAI | RCCGGY | 1 cut(s) | 526 |
| BssMI | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| BssNI | GRCGYC | 1 cut(s) | 618 |
| BssSI | CACGAG | 2 cut(s) | 710, 716 |
| BssT1I | CCWWGG | 1 cut(s) | 417 |
| Bst2BI | CACGAG | 2 cut(s) | 710, 716 |
| Bst2UI | CCWGG | 1 cut(s) | 1036 |
| Bst4CI | ACNGT | 4 cut(s) | 497, 826, 922, 1028 |
| Bst6I | CTCTTC | 1 cut(s) | 500 |
| BstACI | GRCGYC | 1 cut(s) | 618 |
| BstBI | TTCGAA | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 6 cut(s) | 13, 528, 632, 810, 928, 1229 |
| BstDEI | CTNAG | 7 cut(s) | 80, 301, 454, 613, 626, 641, 1046 |
| BstDSI | CCRYGG | 3 cut(s) | 728, 1120, 1222 |
| BstF5I | GGATG | 3 cut(s) | 36, 80, 1233 |
| BstFNI | CGCG | 7 cut(s) | 105, 503, 548, 679, 814, 1122, 1224 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 4 cut(s) | 128, 550, 681, 814 |
| BstKTI | GATC | 7 cut(s) | 193, 201, 235, 325, 350, 857, 868 |
| BstMAI | GTCTC | 3 cut(s) | 165, 639, 670 |
| BstMBI | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 123, 286, 617, 685, 1119, 1212, 1221 |
| BstNI | CCWGG | 1 cut(s) | 1036 |
| BstSCI | CCNGG | 5 cut(s) | 52, 372, 801, 802, 1034 |
| BstSFI | CTRYAG | 1 cut(s) | 1181 |
| BstSLI | GKGCMC | 1 cut(s) | 1035 |
| BstUI | CGCG | 7 cut(s) | 105, 503, 548, 679, 814, 1122, 1224 |
| BstV1I | GCAGC | 2 cut(s) | 298, 1215 |
| BstV2I | GAAGAC | 2 cut(s) | 693, 973 |
| BstX2I | RGATCY | 3 cut(s) | 190, 198, 232 |
| BstYI | RGATCY | 3 cut(s) | 190, 198, 232 |
| BtgI | CCRYGG | 3 cut(s) | 728, 1120, 1222 |
| BtsCI | GGATG | 3 cut(s) | 36, 80, 1233 |
| BveI | ACCTGC | 1 cut(s) | 732 |
| Cac8I | GCNNGC | 6 cut(s) | 13, 528, 632, 810, 928, 1229 |
| CfoI | GCGC | 4 cut(s) | 128, 550, 681, 814 |
| Cfr10I | RCCGGY | 1 cut(s) | 526 |
| Cfr42I | CCGCGG | 2 cut(s) | 1123, 1225 |
| Cfr9I | CCCGGG | 1 cut(s) | 802 |
| CseI | GACGC | 2 cut(s) | 4, 626 |
| Csp6I | GTAC | 2 cut(s) | 403, 918 |
| CviAII | CATG | 1 cut(s) | 283 |
| CviQI | GTAC | 2 cut(s) | 403, 918 |
| DdeI | CTNAG | 7 cut(s) | 80, 301, 454, 613, 626, 641, 1046 |
| DpnI | GATC | 7 cut(s) | 192, 200, 234, 324, 349, 856, 867 |
| DpnII | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| EaeI | YGGCCR | 5 cut(s) | 360, 706, 1071, 1213, 1225 |
| Eam1104I | CTCTTC | 1 cut(s) | 500 |
| EarI | CTCTTC | 1 cut(s) | 500 |
| EciI | GGCGGA | 2 cut(s) | 165, 598 |
| Ecl136II | GAGCTC | 4 cut(s) | 262, 451, 540, 582 |
| Eco130I | CCWWGG | 1 cut(s) | 417 |
| Eco147I | AGGCCT | 1 cut(s) | 459 |
| Eco24I | GRGCYC | 5 cut(s) | 264, 453, 542, 584, 1035 |
| Eco31I | GGTCTC | 1 cut(s) | 670 |
| Eco32I | GATATC | 1 cut(s) | 343 |
| Eco47I | GGWCC | 6 cut(s) | 185, 377, 397, 721, 1062, 1172 |
| Eco53kI | GAGCTC | 4 cut(s) | 262, 451, 540, 582 |
| Eco57I | CTGAAG | 3 cut(s) | 82, 275, 581 |
| Eco88I | CYCGRG | 4 cut(s) | 424, 802, 834, 1003 |
| EcoICRI | GAGCTC | 4 cut(s) | 262, 451, 540, 582 |
| EcoO109I | RGGNCCY | 2 cut(s) | 421, 721 |
| EcoRII | CCWGG | 1 cut(s) | 1034 |
| EcoRV | GATATC | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 1 cut(s) | 417 |
| EcoT38I | GRGCYC | 5 cut(s) | 264, 453, 542, 584, 1035 |
| ErhI | CCWWGG | 1 cut(s) | 417 |
| Esp3I | CGTCTC | 1 cut(s) | 165 |
| FaeI | CATG | 1 cut(s) | 286 |
| FaiI | YATR | 5 cut(s) | 70, 245, 284, 1242, 1254 |
| FaqI | GGGAC | 3 cut(s) | 94, 390, 894 |
| FatI | CATG | 1 cut(s) | 282 |
| FauI | CCCGC | 5 cut(s) | 137, 259, 266, 807, 898 |
| FbaI | TGATCA | 1 cut(s) | 865 |
| Fnu4HI | GCNGC | 9 cut(s) | 103, 142, 208, 287, 312, 861, 903, 1204, 1225 |
| FokI | GGATG | 3 cut(s) | 43, 87, 1220 |
| FriOI | GRGCYC | 5 cut(s) | 264, 453, 542, 584, 1035 |
| Fsp4HI | GCNGC | 9 cut(s) | 103, 142, 208, 287, 312, 861, 903, 1204, 1225 |
| FspBI | CTAG | 2 cut(s) | 87, 137 |
| GlaI | GCGC | 4 cut(s) | 127, 549, 680, 813 |
| GluI | GCNGC | 9 cut(s) | 103, 142, 208, 287, 312, 861, 903, 1204, 1225 |
| GsaI | CCCAGC | 1 cut(s) | 117 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HgaI | GACGC | 2 cut(s) | 4, 626 |
| HhaI | GCGC | 4 cut(s) | 128, 550, 681, 814 |
| Hin1I | GRCGYC | 1 cut(s) | 618 |
| Hin1II | CATG | 1 cut(s) | 286 |
| Hin6I | GCGC | 4 cut(s) | 126, 548, 679, 812 |
| HinP1I | GCGC | 4 cut(s) | 126, 548, 679, 812 |
| HincII | GTYRAC | 2 cut(s) | 19, 319 |
| HindII | GTYRAC | 2 cut(s) | 19, 319 |
| HphI | GGTGA | 1 cut(s) | 758 |
| Hpy166II | GTNNAC | 3 cut(s) | 19, 319, 946 |
| Hpy188I | TCNGA | 9 cut(s) | 327, 347, 561, 616, 748, 891, 1049, 1082, 1157 |
| Hpy188III | TCNNGA | 7 cut(s) | 28, 188, 194, 667, 829, 836, 985 |
| Hpy8I | GTNNAC | 3 cut(s) | 19, 319, 946 |
| Hpy99I | CGWCG | 7 cut(s) | 122, 125, 260, 337, 679, 847, 970 |
| HpyAV | CCTTC | 4 cut(s) | 106, 176, 581, 1187 |
| HpyCH4III | ACNGT | 4 cut(s) | 497, 826, 922, 1028 |
| HpyCH4IV | ACGT | 2 cut(s) | 1077, 1101 |
| HpyCH4V | TGCA | 1 cut(s) | 1183 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 123, 286, 617, 685, 1119, 1212, 1221 |
| HpyF3I | CTNAG | 7 cut(s) | 80, 301, 454, 613, 626, 641, 1046 |
| HpySE526I | ACGT | 2 cut(s) | 1077, 1101 |
| Hsp92I | GRCGYC | 1 cut(s) | 618 |
| Hsp92II | CATG | 1 cut(s) | 286 |
| HspAI | GCGC | 4 cut(s) | 126, 548, 679, 812 |
| Kpn2I | TCCGGA | 1 cut(s) | 193 |
| KroI | GCCGGC | 1 cut(s) | 526 |
| KroNI | GCCGGC | 1 cut(s) | 528 |
| Ksp22I | TGATCA | 1 cut(s) | 865 |
| KspI | CCGCGG | 2 cut(s) | 1123, 1225 |
| Kzo9I | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| LguI | GCTCTTC | 1 cut(s) | 500 |
| LmnI | GCTCC | 5 cut(s) | 448, 579, 994, 1057, 1118 |
| Lsp1109I | GCAGC | 2 cut(s) | 298, 1215 |
| MaeI | CTAG | 2 cut(s) | 87, 137 |
| MaeII | ACGT | 2 cut(s) | 1077, 1101 |
| MaeIII | GTNAC | 2 cut(s) | 497, 1084 |
| MalI | GATC | 7 cut(s) | 192, 200, 234, 324, 349, 856, 867 |
| MbiI | CCGCTC | 1 cut(s) | 1060 |
| MboI | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| MboII | GAAGA | 5 cut(s) | 242, 517, 693, 973, 1198 |
| MflI | RGATCY | 3 cut(s) | 190, 198, 232 |
| MhlI | GDGCHC | 6 cut(s) | 264, 453, 542, 584, 717, 1035 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 2 cut(s) | 383, 780 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| MlyI | GAGTC | 7 cut(s) | 91, 116, 445, 826, 895, 941, 1081 |
| MmeI | TCCRAC | 1 cut(s) | 350 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MreI | CGCCGGCG | 1 cut(s) | 526 |
| MroI | TCCGGA | 1 cut(s) | 193 |
| MroNI | GCCGGC | 1 cut(s) | 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 566 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 2 cut(s) | 167, 386 |
| MslI | CAYNNNNRTG | 2 cut(s) | 29, 73 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspA1I | CMGCKG | 2 cut(s) | 1122, 1224 |
| MspR9I | CCNGG | 5 cut(s) | 54, 374, 803, 804, 1036 |
| MvaI | CCWGG | 1 cut(s) | 1036 |
| MvnI | CGCG | 7 cut(s) | 105, 503, 548, 679, 814, 1122, 1224 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 123, 286, 617, 685, 1119, 1212, 1221 |
| NaeI | GCCGGC | 1 cut(s) | 528 |
| NciI | CCSGG | 4 cut(s) | 54, 374, 803, 804 |
| NdeII | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| NgoMIV | GCCGGC | 1 cut(s) | 526 |
| NlaIII | CATG | 1 cut(s) | 286 |
| NlaIV | GGNNCC | 7 cut(s) | 57, 148, 378, 399, 423, 1033, 1173 |
| NmeAIII | GCCGAG | 2 cut(s) | 978, 1049 |
| NmuCI | GTSAC | 1 cut(s) | 1084 |
| NspV | TTCGAA | 1 cut(s) | 131 |
| PaeR7I | CTCGAG | 1 cut(s) | 1003 |
| PceI | AGGCCT | 1 cut(s) | 459 |
| PciSI | GCTCTTC | 1 cut(s) | 500 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 507, 752 |
| PdiI | GCCGGC | 1 cut(s) | 528 |
| PdmI | GAANNNNTTC | 1 cut(s) | 566 |
| PfeI | GAWTC | 6 cut(s) | 90, 172, 659, 743, 763, 911 |
| PflFI | GACNNNGTC | 1 cut(s) | 885 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 991 |
| PkrI | GCNGC | 9 cut(s) | 104, 143, 209, 288, 313, 862, 904, 1205, 1226 |
| PleI | GAGTC | 7 cut(s) | 90, 115, 444, 826, 894, 941, 1081 |
| PpsI | GAGTC | 7 cut(s) | 90, 115, 444, 826, 894, 941, 1081 |
| PpuMI | RGGWCCY | 1 cut(s) | 721 |
| PshBI | ATTAAT | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 4 cut(s) | 264, 453, 542, 584 |
| Psp1406I | AACGTT | 1 cut(s) | 1101 |
| Psp5II | RGGWCCY | 1 cut(s) | 721 |
| Psp6I | CCWGG | 1 cut(s) | 1034 |
| PspFI | CCCAGC | 1 cut(s) | 113 |
| PspGI | CCWGG | 1 cut(s) | 1034 |
| PspN4I | GGNNCC | 7 cut(s) | 57, 148, 378, 399, 423, 1033, 1173 |
| PspOMI | GGGCCC | 1 cut(s) | 1031 |
| PspPPI | RGGWCCY | 1 cut(s) | 721 |
| PspXI | VCTCGAGB | 1 cut(s) | 1003 |
| PstI | CTGCAG | 1 cut(s) | 1185 |
| PsuI | RGATCY | 3 cut(s) | 190, 198, 232 |
| PsyI | GACNNNGTC | 1 cut(s) | 885 |
| RsaI | GTAC | 2 cut(s) | 404, 919 |
| RsaNI | GTAC | 2 cut(s) | 403, 918 |
| RseI | CAYNNNNRTG | 2 cut(s) | 29, 73 |
| SacI | GAGCTC | 4 cut(s) | 264, 453, 542, 584 |
| SacII | CCGCGG | 2 cut(s) | 1123, 1225 |
| SapI | GCTCTTC | 1 cut(s) | 500 |
| SaqAI | TTAA | 2 cut(s) | 167, 386 |
| SatI | GCNGC | 9 cut(s) | 103, 142, 208, 287, 312, 861, 903, 1204, 1225 |
| Sau3AI | GATC | 7 cut(s) | 190, 198, 232, 322, 347, 854, 865 |
| SchI | GAGTC | 7 cut(s) | 91, 116, 445, 826, 895, 941, 1081 |
| ScrFI | CCNGG | 5 cut(s) | 54, 374, 803, 804, 1036 |
| SduI | GDGCHC | 6 cut(s) | 264, 453, 542, 584, 717, 1035 |
| SfcI | CTRYAG | 1 cut(s) | 1181 |
| Sfr274I | CTCGAG | 1 cut(s) | 1003 |
| Sfr303I | CCGCGG | 2 cut(s) | 1123, 1225 |
| SfuI | TTCGAA | 1 cut(s) | 131 |
| SgrAI | CRCCGGYG | 1 cut(s) | 526 |
| SgrBI | CCGCGG | 2 cut(s) | 1123, 1225 |
| SinI | GGWCC | 6 cut(s) | 185, 377, 397, 721, 1062, 1172 |
| SlaI | CTCGAG | 1 cut(s) | 1003 |
| SmaI | CCCGGG | 1 cut(s) | 804 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 29, 73 |
| SmlI | CTYRAG | 1 cut(s) | 1003 |
| SmoI | CTYRAG | 1 cut(s) | 1003 |
| Sse9I | AATT | 2 cut(s) | 383, 780 |
| SseBI | AGGCCT | 1 cut(s) | 459 |
| SspMI | CTAG | 2 cut(s) | 87, 137 |
| SstI | GAGCTC | 4 cut(s) | 264, 453, 542, 584 |
| StuI | AGGCCT | 1 cut(s) | 459 |
| StyD4I | CCNGG | 5 cut(s) | 52, 372, 801, 802, 1034 |
| StyI | CCWWGG | 1 cut(s) | 417 |
| TaaI | ACNGT | 4 cut(s) | 497, 826, 922, 1028 |
| TaiI | ACGT | 2 cut(s) | 1080, 1104 |
| TaqI | TCGA | 9 cut(s) | 131, 216, 332, 434, 584, 668, 741, 872, 1004 |
| TaqII | GACCGA | 1 cut(s) | 652 |
| TasI | AATT | 2 cut(s) | 383, 780 |
| TauI | GCSGC | 7 cut(s) | 105, 144, 210, 289, 863, 905, 1227 |
| TfiI | GAWTC | 6 cut(s) | 90, 172, 659, 743, 763, 911 |
| Tru1I | TTAA | 2 cut(s) | 167, 386 |
| Tru9I | TTAA | 2 cut(s) | 167, 386 |
| TseFI | GTSAC | 1 cut(s) | 1084 |
| TseI | GCWGC | 2 cut(s) | 311, 1203 |
| Tsp45I | GTSAC | 1 cut(s) | 1084 |
| TspDTI | ATGAA | 1 cut(s) | 974 |
| TspGWI | ACGGA | 4 cut(s) | 87, 153, 350, 898 |
| TspMI | CCCGGG | 1 cut(s) | 802 |
| Tth111I | GACNNNGTC | 1 cut(s) | 885 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 991 |
| VpaK11BI | GGWCC | 6 cut(s) | 185, 377, 397, 721, 1062, 1172 |
| VspI | ATTAAT | 1 cut(s) | 386 |
| XhoI | CTCGAG | 1 cut(s) | 1003 |
| XmaI | CCCGGG | 1 cut(s) | 802 |
| XmnI | GAANNNNTTC | 1 cut(s) | 566 |
| XspI | CTAG | 2 cut(s) | 87, 137 |