Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004754

Physical Location & Seq

Genomic Coordinates Reverse (-)

21024486 .. 21028066

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTTTATCTCCGTCGTCTCCTCCATGTCTCAGATCTCTTTCGCCTTCTTTTTCTCGCCAAATTGGCTTCCTTGTTCCACGCGTACAGTCTCTAGTCTTTGGTAGCGTCCGGAAGCATGAGTTGCGGAGGCCGAGCGCACTCAGGGAATGGCGGGAGTACGAAGATGCTGTGAAGAGAAAAGATCTCGCCGGGGCTCTTAGATTCCTCAAATCTATTGAAAATGATGAACAGCGTGATTCGGTTGAATCTATTGTCACGGCTAAGTTAAGCGGCTTGGGAGCTCTTGAATTGGAGAGGGATTGGCAAGTTTTAGATGCGTGTTTGAATGCAGATGATATGAGACTTGTTGGAAGTGCGTTTAGGTTTCTTAAGGAGAGAGGTCTTTTGGCCAACTTCGGCAAATTCACCAGTATTGTTTTGGAAGGAACAAGAGAGGTAACACCTACTGTCCTGAAGTCTGCAACTGGCTTGGAAGTGACTAAACTTTCACCGAAGAAGTGGGGACTTTCTGGTGGTTCTAGCATTGCTCTGGCTGCTTTGCTGGGTGGAGTCTCCTATCTTCTTTCACAGGAGATTGATGTGCGGCCAAACCTTGCTGTCATTTTGGGTCTAGCTTATTTGGATTCCGTTTTTCTTGGTGGTACCTGCTTAGCCCAAGTATCATGCTACTGGCCTCCACATAAGCGTAGAATCGTAGTTCACGAAGCTGGTCATCTTCTTGTTGCATACCTCATGGGCTGCCCAATCCGTGGTGTGATATTGGATCCGGTTGTTGCCATGCAAATGGGGGTTCAAGGCCAGGCTGGAACCCAATTCTGGGATCAAAAGATGGAGAGTGAGATTGCTGAGGGACGACTTAGCGGTAGCTCATTTGATAGGTATAGCATGGTACTATTTGCTGGTATTGCAGCTGAAGCGCTAGTTTATGGTGAGGCTGAGGGTGGAGAGAATGATGAAAATCTGTTCAGGAGCATCTCAGTCCTTCTGGAACCACCGTTATCCGTAGCTCAGATGTCGAATCAAGCCAGGTGGTCTGTTCTACAATCTTACAATCTACTCAAGTGGCACAAGGCAGCACATAGGGCCGCTGTTGAAGCTCTCCAAGTGGGAAGTCCTCTTAGCATTGTGATTAGAAGGATTGAGGAAGCCATGTCTTCAAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

42.59

Weight (kDa)

8.22

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56180 AT1G56180
fragaria_vesca	FvH4_3g14920 FvH4_3g14920 FvH4_3g14920 FvH4_3g14920 FvH4_3g14920 FvH4_3g14920 FvH4_3g14920 FvH4_3g14920
malus_domestica	MD05G1233900.v1.1
prunus_persica	Prupe.4G133700_v2.0.a1 Prupe.4G133700_v2.0.a1 Prupe.4G133700_v2.0.a1 Prupe.4G133700_v2.0.a1 Prupe.4G133700_v2.0.a1
pyrus_communis	pycom05g21130
rosa_chinensis	RchiOBHm_Chr5g0024521
rosa_laevigata	RLG00000032804
rosa_multiflora	Rmu_sc0000761.1_g000009 Rmu_sc0000761.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054730
rosa_rugosa	Rorug05G0083500 Rorug05G0083600
rosa_samantha	Rh5AG175100 Rh5AG175400 Rh5BG172600 Rh5CG188700 Rh5DG174200
rosa_wichuraiana	Rw5G015720 Rw5G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	644
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	6 cut(s)	127, 154, 273, 586, 864, 1089
AclWI	GGATC	3 cut(s)	761, 774, 831
AcoI	YGGCCR	2 cut(s)	390, 587
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	476, 936
AfaI	GTAC	4 cut(s)	87, 161, 646, 894
AfeI	AGCGCT	1 cut(s)	921
AfiI	CCNNNNNNNGG	3 cut(s)	752, 819, 820
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	7 cut(s)	221, 248, 290, 328, 797, 1097, 1161
AjnI	CCWGG	2 cut(s)	801, 1028
AluBI	AGCT	7 cut(s)	284, 617, 710, 870, 914, 1010, 1100
AluI	AGCT	7 cut(s)	284, 617, 710, 870, 914, 1010, 1100
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	5 cut(s)	24, 35, 96, 337, 559
AlwI	GGATC	3 cut(s)	761, 774, 831
Aor13HI	TCCGGA	1 cut(s)	111
Aor51HI	AGCGCT	1 cut(s)	921
AoxI	GGCC	6 cut(s)	131, 390, 587, 674, 799, 1086
ApeKI	GCWGC	4 cut(s)	536, 741, 911, 1076
ApoI	RAATTY	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	644
AspLEI	GCGC	2 cut(s)	140, 922
AspS9I	GGNCC	1 cut(s)	1086
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	400, 483, 944
BalI	TGGCCA	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	644
BanII	GRGCYC	2 cut(s)	199, 286
BbsI	GAAGAC	1 cut(s)	1149
Bbv12I	GWGCWC	1 cut(s)	286
BbvCI	CCTCAGC	2 cut(s)	849, 939
BbvI	GCAGC	4 cut(s)	523, 728, 923, 1088
BccI	CCATC	1 cut(s)	826
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	2 cut(s)	803, 1030
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	5 cut(s)	24, 35, 96, 337, 559
BfaI	CTAG	4 cut(s)	95, 522, 614, 923
BfoI	RGCGCY	1 cut(s)	923
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	2 cut(s)	35, 184
BisI	GCNGC	7 cut(s)	274, 537, 587, 742, 912, 1077, 1089
BlpI	GCTNAGC	1 cut(s)	652
BlsI	GCNGC	7 cut(s)	275, 538, 588, 743, 913, 1078, 1090
Bme1390I	CCNGG	3 cut(s)	193, 803, 1030
BmgT120I	GGNCC	1 cut(s)	1086
BmiI	GGNNCC	4 cut(s)	646, 768, 811, 993
BmrFI	CCNGG	3 cut(s)	193, 803, 1030
BmsI	GCATC	3 cut(s)	157, 307, 984
BpiI	GAAGAC	1 cut(s)	1149
Bpu10I	CCTNAGC	2 cut(s)	849, 939
Bpu1102I	GCTNAGC	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	960
BsaJI	CCNNGG	2 cut(s)	192, 751
BsaWI	WCCGGW	2 cut(s)	111, 769
Bsc4I	CCNNNNNNNGG	3 cut(s)	752, 819, 820
Bse1I	ACTGG	3 cut(s)	411, 472, 677
Bse3DI	GCAATG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	803, 1030
BseDI	CCNNGG	2 cut(s)	192, 751
BseJI	GATNNNNATC	1 cut(s)	960
BseLI	CCNNNNNNNGG	3 cut(s)	752, 819, 820
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	6 cut(s)	46, 157, 840, 930, 993, 1025
BseNI	ACTGG	3 cut(s)	411, 472, 677
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	523, 728, 923, 1088
BseYI	CCCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	6 cut(s)	133, 392, 589, 676, 801, 1088
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	3 cut(s)	112, 192, 770
BslFI	GGGAC	2 cut(s)	519, 867
BslI	CCNNNNNNNGG	3 cut(s)	752, 819, 820
BsmAI	GTCTC	5 cut(s)	24, 35, 96, 337, 559
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	2 cut(s)	519, 867
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	6 cut(s)	133, 392, 589, 676, 801, 1088
Bsp1286I	GDGCHC	2 cut(s)	199, 286
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	35, 184, 766, 823
Bsp1720I	GCTNAGC	1 cut(s)	652
BspACI	CCGC	6 cut(s)	127, 154, 273, 586, 864, 1089
BspANI	GGCC	6 cut(s)	133, 392, 589, 676, 801, 1088
BspCNI	CTCAG	6 cut(s)	45, 156, 841, 931, 992, 1024
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	4 cut(s)	646, 768, 811, 993
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	3 cut(s)	761, 774, 831
BspT107I	GGYRCC	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	411, 472, 677
BssECI	CCNNGG	2 cut(s)	192, 751
BssMI	GATC	4 cut(s)	35, 184, 766, 823
Bst2UI	CCWGG	2 cut(s)	803, 1030
Bst4CI	ACNGT	3 cut(s)	90, 451, 999
Bst6I	CTCTTC	1 cut(s)	170
BstAFI	CTTAAG	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	751
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	923
BstHHI	GCGC	2 cut(s)	140, 922
BstKTI	GATC	4 cut(s)	38, 187, 769, 826
BstMAI	GTCTC	5 cut(s)	24, 35, 96, 337, 559
BstMBI	GATC	4 cut(s)	35, 184, 766, 823
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 124, 536, 908, 917, 1085, 1097
BstNI	CCWGG	2 cut(s)	803, 1030
BstSCI	CCNGG	3 cut(s)	191, 801, 1028
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	523, 728, 923, 1088
BstV2I	GAAGAC	1 cut(s)	1149
BstX2I	RGATCY	3 cut(s)	35, 184, 766
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	3 cut(s)	35, 184, 766
BsuRI	GGCC	6 cut(s)	133, 392, 589, 676, 801, 1088
BtgI	CCRYGG	1 cut(s)	751
BveI	ACCTGC	1 cut(s)	656
CfoI	GCGC	2 cut(s)	140, 922
Cfr13I	GGNCC	1 cut(s)	1086
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	4 cut(s)	86, 160, 645, 893
CspCI	CAANNNNNGTGG	2 cut(s)	1013, 1048
CviAII	CATG	7 cut(s)	27, 119, 666, 736, 781, 889, 1153
CviQI	GTAC	4 cut(s)	86, 160, 645, 893
DpnI	GATC	4 cut(s)	37, 186, 768, 825
DpnII	GATC	4 cut(s)	35, 184, 766, 823
EaeI	YGGCCR	2 cut(s)	390, 587
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	2 cut(s)	199, 286
Eco47III	AGCGCT	1 cut(s)	921
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	476, 936
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	801, 1028
EcoT38I	GRGCYC	2 cut(s)	199, 286
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	7 cut(s)	30, 122, 669, 739, 784, 892, 1156
FaqI	GGGAC	2 cut(s)	519, 867
FatI	CATG	7 cut(s)	26, 118, 665, 735, 780, 888, 1152
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	274, 537, 587, 742, 912, 1077, 1089
FriOI	GRGCYC	2 cut(s)	199, 286
Fsp4HI	GCNGC	7 cut(s)	274, 537, 587, 742, 912, 1077, 1089
FspBI	CTAG	4 cut(s)	95, 522, 614, 923
GlaI	GCGC	2 cut(s)	139, 921
GluI	GCNGC	7 cut(s)	274, 537, 587, 742, 912, 1077, 1089
GsaI	CCCAGC	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	923
HaeIII	GGCC	6 cut(s)	133, 392, 589, 676, 801, 1088
HapII	CCGG	3 cut(s)	112, 192, 770
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	140, 922
Hin1II	CATG	7 cut(s)	30, 122, 669, 739, 784, 892, 1156
Hin6I	GCGC	2 cut(s)	138, 920
HinP1I	GCGC	2 cut(s)	138, 920
HinfI	GANTC	7 cut(s)	204, 239, 248, 552, 626, 693, 1021
HpaII	CCGG	3 cut(s)	112, 192, 770
HphI	GGTGA	3 cut(s)	400, 483, 944
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	2 cut(s)	35, 1014
Hpy188III	TCNNGA	6 cut(s)	112, 287, 454, 704, 970, 989
Hpy8I	GTNNAC	1 cut(s)	703
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	57, 419, 995, 1131
HpyCH4III	ACNGT	3 cut(s)	90, 451, 999
HpyCH4V	TGCA	5 cut(s)	332, 464, 728, 784, 911
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 124, 536, 908, 917, 1085, 1097
Hsp92II	CATG	7 cut(s)	30, 122, 669, 739, 784, 892, 1156
HspAI	GCGC	2 cut(s)	138, 920
Kpn2I	TCCGGA	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	35, 184, 766, 823
LmnI	GCTCC	2 cut(s)	281, 972
Lsp1109I	GCAGC	4 cut(s)	523, 728, 923, 1088
LweI	GCATC	3 cut(s)	157, 307, 984
MaeI	CTAG	4 cut(s)	95, 522, 614, 923
MaeIII	GTNAC	3 cut(s)	256, 439, 478
MalI	GATC	4 cut(s)	37, 186, 768, 825
MboI	GATC	4 cut(s)	35, 184, 766, 823
MboII	GAAGA	6 cut(s)	176, 187, 508, 554, 710, 1149
MflI	RGATCY	3 cut(s)	35, 184, 766
MhlI	GDGCHC	2 cut(s)	199, 286
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	4 cut(s)	63, 290, 404, 815
MluI	ACGCGT	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	331
Mox20I	TGGCCA	1 cut(s)	392
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	2 cut(s)	269, 372
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	2 cut(s)	914, 1091
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	3 cut(s)	112, 192, 770
MspR9I	CCNGG	3 cut(s)	193, 803, 1030
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	803, 1030
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	7 cut(s)	66, 124, 536, 908, 917, 1085, 1097
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	4 cut(s)	35, 184, 766, 823
NlaIII	CATG	7 cut(s)	30, 122, 669, 739, 784, 892, 1156
NlaIV	GGNNCC	4 cut(s)	646, 768, 811, 993
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	256, 478
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	6 cut(s)	204, 239, 248, 626, 693, 1021
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	7 cut(s)	275, 538, 588, 743, 913, 1078, 1090
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	801, 1028
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	801, 1028
PspN4I	GGNNCC	4 cut(s)	646, 768, 811, 993
PspPI	GGNCC	1 cut(s)	1086
PsuI	RGATCY	3 cut(s)	35, 184, 766
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	4 cut(s)	87, 161, 646, 894
RsaNI	GTAC	4 cut(s)	86, 160, 645, 893
RseI	CAYNNNNRTG	1 cut(s)	785
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	269, 372
SatI	GCNGC	7 cut(s)	274, 537, 587, 742, 912, 1077, 1089
Sau3AI	GATC	4 cut(s)	35, 184, 766, 823
Sau96I	GGNCC	1 cut(s)	1086
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	3 cut(s)	193, 803, 1030
SduI	GDGCHC	2 cut(s)	199, 286
SfaNI	GCATC	3 cut(s)	157, 307, 984
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	371, 1061
SmoI	CTYRAG	2 cut(s)	371, 1061
Sse9I	AATT	4 cut(s)	63, 290, 404, 815
SsiI	CCGC	6 cut(s)	127, 154, 273, 586, 864, 1089
SspMI	CTAG	4 cut(s)	95, 522, 614, 923
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	191, 801, 1028
TaaI	ACNGT	3 cut(s)	90, 451, 999
TaqI	TCGA	1 cut(s)	1019
TasI	AATT	4 cut(s)	63, 290, 404, 815
TauI	GCSGC	3 cut(s)	276, 589, 1091
TfiI	GAWTC	6 cut(s)	204, 239, 248, 626, 693, 1021
Tru1I	TTAA	2 cut(s)	269, 372
Tru9I	TTAA	2 cut(s)	269, 372
TseFI	GTSAC	2 cut(s)	256, 478
TseI	GCWGC	4 cut(s)	536, 741, 911, 1076
Tsp45I	GTSAC	2 cut(s)	256, 478
TspDTI	ATGAA	2 cut(s)	243, 972
TspGWI	ACGGA	3 cut(s)	619, 740, 994
Van91I	CCANNNNNTGG	1 cut(s)	752
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XspI	CTAG	4 cut(s)	95, 522, 614, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.