Prupe.4G133700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
7399046 .. 7402452
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133700.2

Sequence Viewer

Length: 1212 bp
ATGGCTTTTGCTTCGCCAAACCTCAAATCCATCCCTCACTTTCTCTCACCCCAGCCATTTTCCTCCCAATTTTCCTTTCTTTTCCTCCAAACACCCCGACGTGCACCACCACCCGCCAAATTTCTTCACACCTCAAGGCGCCAAACCGTCCCAAGATCCGCTCTTCGAGAATGGAAAGAGTATGAGGAGGCAGTGAAGCGCAAGGACCTAGCTGGAGCTCTCAGGTTCCTGCAATCCATTGAGACCCAGCAAAACCCAATTGAGTTTGTTAATGGGTCCTTACCAGCTGATCCGACCCTTCCTCGACTCGGCGAGTTGGGGTTTGTTGGGCAGGAGAGGGATTGGGAGGTCCTGGACACGTGTCTGAATGCTGATAATATGAAGCTGGTGGGCAAAGCTTATGGCTTTCTCAAGGACAAGGGTTTCTTGCCCAGTTTTGGAAAGTTCAGGAACGTTGTTATGGAGGGAACGCGTGATGTTACACCAACAGTGTTGAAGACTTCAACTGGTTTAGAAGCAACGAAATTTGCTCCAAAAAAGTGGGGCCTTTCTGAAAGTTCTGGTCCCATTTTGATTGCCTTTCTTGGCGGGATATCTTTTCTTCTTTCTCAAGGCATCGATCTCAGGCCTAACCTTGCAGCAGTATTGGGGCTAGCATTTGCAGATTCTGTCTTTCTTGGCGGTAGTTGTTTAGCTCAAATCTCAAGTTATTGGCCCCCAAATAGACGTCGGATCCTCATTCATGAAGCAGGGCATCTGCTAATAGCTTATCTAATGGGTTGCCCAATTCGTGGGGTGATATTAGATCCAGTTGTTGCAATGCAAATGGGCATTCAAGGGCAGGCAGGAACTCAATTTTGGGATGAGAAAATGGCCAATGACCTTGCTGAAGGACGACTTGATGGCTCTGCTTTTGACAGGTACTGCATGGTGCTTTTCGCAGGCATTGCTGCTGAAGCTCTTGTTTATGGTGAGGCAGAGGGTGGAGAAAATGATGAAAACCTATTTAGGAGCATCTGTGTTCTTCTACAACCCCCATTGTCTGTTGCTGAGGAGATGTCAAACCAAGCAAGATGGTCCCTTCTACAATCTTACAATTTGCTCAAATGGCATAAAAATGCACACCGAGCTGCAGTTGAAGCTTTAGGAAGTGGCAATGGTCTTAGTGTTGTAATTAGGAGTATTGAGGAAGCAATATTAGCTAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

44.32

Weight (kDa)

7.65

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 791
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 1 cut(s) 472
AciI CCGC 4 cut(s) 114, 159, 588, 681
AclI AACGTT 1 cut(s) 453
AclWI GGATC 5 cut(s) 150, 284, 727, 740, 800
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 2 cut(s) 119, 524
AcuI CTGAAG 2 cut(s) 909, 975
AcvI CACGTG 1 cut(s) 360
AcyI GRCGYC 2 cut(s) 139, 727
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 3 cut(s) 308, 437, 791
AflIII ACRYGT 3 cut(s) 357, 359, 470
AgsI TTSAA 4 cut(s) 496, 504, 836, 1139
AjiI CACGTC 1 cut(s) 101
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 4 cut(s) 60, 92, 841, 873
Alw21I GWGCWC 2 cut(s) 106, 220
Alw26I GTCTC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 5 cut(s) 150, 284, 727, 740, 800
AlwNI CAGNNNCTG 2 cut(s) 668, 924
AoxI GGCC 4 cut(s) 544, 626, 713, 873
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 638, 950, 1130
ApoI RAATTY 2 cut(s) 119, 524
AspLEI GCGC 2 cut(s) 141, 201
AspS9I GGNCC 7 cut(s) 205, 276, 349, 544, 563, 714, 1077
AsuHPI GGTGA 3 cut(s) 39, 808, 983
AsuNHI GCTAGC 1 cut(s) 652
AvaII GGWCC 5 cut(s) 205, 276, 349, 563, 1077
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 875
BamHI GGATCC 1 cut(s) 732
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 220
BbrPI CACGTG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 106, 220
BbvCI CCTCAGC 1 cut(s) 1050
BbvI GCAGC 3 cut(s) 650, 937, 1117
BccI CCATC 3 cut(s) 38, 896, 1068
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 2 cut(s) 209, 653
BfmI CTRYAG 1 cut(s) 1131
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 3 cut(s) 639, 951, 1131
BlsI GCNGC 3 cut(s) 640, 952, 1132
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 5 cut(s) 205, 276, 349, 563, 1077
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 7 cut(s) 205, 276, 349, 544, 563, 714, 1077
BmiI GGNNCC 8 cut(s) 140, 227, 277, 545, 565, 716, 734, 1079
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 3 cut(s) 624, 763, 1023
BmtI GCTAGC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 426
BoxI GACNNNNGTC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 4 cut(s) 118, 395, 594, 688
Bsa29I ATCGAT 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 360
BsaHI GRCGYC 2 cut(s) 139, 727
BsaI GGTCTC 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 1003, 1033
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 437, 791
Bse1I ACTGG 3 cut(s) 432, 511, 809
Bse3DI GCAATG 3 cut(s) 825, 945, 1162
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 618
BseGI GGATG 2 cut(s) 30, 868
BseLI CCNNNNNNNGG 3 cut(s) 308, 437, 791
BseMI GCAATG 3 cut(s) 825, 945, 1162
BseMII CTCAG 3 cut(s) 235, 637, 1041
BseNI ACTGG 3 cut(s) 432, 511, 809
BseRI GAGGAG 2 cut(s) 200, 1067
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 3 cut(s) 650, 937, 1117
BseYI CCCAGC 2 cut(s) 51, 246
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 4 cut(s) 546, 628, 715, 875
BshNI GGYRCC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 618
BsiHKAI GWGCWC 2 cut(s) 106, 220
BslFI GGGAC 3 cut(s) 134, 549, 1063
BslI CCNNNNNNNGG 3 cut(s) 308, 437, 791
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 3 cut(s) 134, 549, 1063
BsmI GAATGC 2 cut(s) 373, 831
BsnI GGCC 4 cut(s) 546, 628, 715, 875
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 106, 220
Bsp143I GATC 5 cut(s) 155, 289, 619, 732, 805
BspACI CCGC 4 cut(s) 114, 159, 588, 681
BspANI GGCC 4 cut(s) 546, 628, 715, 875
BspCNI CTCAG 3 cut(s) 234, 636, 1042
BspDI ATCGAT 1 cut(s) 618
BspFNI CGCG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 8 cut(s) 140, 227, 277, 545, 565, 716, 734, 1079
BspMAI CTGCAG 1 cut(s) 1135
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 5 cut(s) 150, 284, 727, 740, 800
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 3 cut(s) 825, 945, 1162
BsrI ACTGG 3 cut(s) 432, 511, 809
BssMI GATC 5 cut(s) 155, 289, 619, 732, 805
BssNI GRCGYC 2 cut(s) 139, 727
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 148, 490
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 2 cut(s) 139, 727
BstAPI GCANNNNNTGC 1 cut(s) 947
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 654, 843, 943
BstDEI CTNAG 4 cut(s) 221, 623, 1050, 1163
BstF5I GGATG 2 cut(s) 30, 868
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 201
BstKTI GATC 5 cut(s) 158, 292, 622, 735, 808
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 5 cut(s) 155, 289, 619, 732, 805
BstMWI GCNNNNNNNGC 6 cut(s) 947, 956, 1108, 1127, 1139, 1199
BstNI CCWGG 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 1131
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 650, 937, 1117
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 3 cut(s) 155, 732, 805
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 3 cut(s) 155, 732, 805
Bsu15I ATCGAT 1 cut(s) 618
BsuRI GGCC 4 cut(s) 546, 628, 715, 875
BsuTUI ATCGAT 1 cut(s) 618
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 2 cut(s) 30, 868
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 495
Cac8I GCNNGC 3 cut(s) 654, 843, 943
CaiI CAGNNNCTG 2 cut(s) 668, 924
CciI TCATGA 1 cut(s) 742
CfoI GCGC 2 cut(s) 141, 201
Cfr13I GGNCC 7 cut(s) 205, 276, 349, 544, 563, 714, 1077
ClaI ATCGAT 1 cut(s) 618
Csp6I GTAC 1 cut(s) 922
CviAII CATG 2 cut(s) 743, 928
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 4 cut(s) 221, 623, 1050, 1163
DinI GGCGCC 1 cut(s) 140
DpnI GATC 5 cut(s) 157, 291, 621, 734, 807
DpnII GATC 5 cut(s) 155, 289, 619, 732, 805
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 236
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 5 cut(s) 205, 276, 349, 563, 1077
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 909, 975
Eco72I CACGTG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 218
EcoO109I RGGNCCY 4 cut(s) 205, 276, 349, 544
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 220
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
FaeI CATG 2 cut(s) 746, 931
FaiI YATR 8 cut(s) 183, 380, 402, 461, 744, 929, 969, 1113
FalI AAGNNNNNCTT 4 cut(s) 410, 442, 882, 914
FaqI GGGAC 3 cut(s) 134, 549, 1063
FatI CATG 2 cut(s) 742, 927
FauI CCCGC 2 cut(s) 121, 581
Fnu4HI GCNGC 3 cut(s) 639, 951, 1131
FokI GGATG 2 cut(s) 17, 875
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 639, 951, 1131
FspBI CTAG 2 cut(s) 209, 653
GlaI GCGC 2 cut(s) 140, 200
GluI GCNGC 3 cut(s) 639, 951, 1131
GsaI CCCAGC 2 cut(s) 55, 250
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 4 cut(s) 546, 628, 715, 875
HhaI GCGC 2 cut(s) 141, 201
Hin1I GRCGYC 2 cut(s) 139, 727
Hin1II CATG 2 cut(s) 746, 931
Hin6I GCGC 2 cut(s) 139, 199
HinP1I GCGC 2 cut(s) 139, 199
HindIII AAGCTT 2 cut(s) 396, 1140
HinfI GANTC 2 cut(s) 306, 665
HphI GGTGA 3 cut(s) 39, 808, 983
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 294, 366, 553, 732
Hpy188III TCNNGA 3 cut(s) 167, 448, 743
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 2 cut(s) 102, 732
HpyAV CCTTC 3 cut(s) 308, 884, 1091
HpyCH4III ACNGT 2 cut(s) 148, 490
HpyCH4IV ACGT 4 cut(s) 100, 359, 453, 727
HpyCH4V TGCA 9 cut(s) 104, 232, 638, 662, 818, 823, 927, 1121, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 947, 956, 1108, 1127, 1139, 1199
HpyF3I CTNAG 4 cut(s) 221, 623, 1050, 1163
HpySE526I ACGT 4 cut(s) 100, 359, 453, 727
Hsp92I GRCGYC 2 cut(s) 139, 727
Hsp92II CATG 2 cut(s) 746, 931
HspAI GCGC 2 cut(s) 139, 199
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 5 cut(s) 155, 289, 619, 732, 805
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 3 cut(s) 215, 535, 1011
Lsp1109I GCAGC 3 cut(s) 650, 937, 1117
LweI GCATC 3 cut(s) 624, 763, 1023
MaeI CTAG 2 cut(s) 209, 653
MaeII ACGT 4 cut(s) 100, 359, 453, 727
MaeIII GTNAC 1 cut(s) 478
MalI GATC 5 cut(s) 157, 291, 621, 734, 807
MbiI CCGCTC 1 cut(s) 161
MboI GATC 5 cut(s) 155, 289, 619, 732, 805
MboII GAAGA 5 cut(s) 116, 155, 508, 593, 1016
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 3 cut(s) 155, 732, 805
MhlI GDGCHC 2 cut(s) 106, 220
MlsI TGGCCA 1 cut(s) 875
MluCI AATT 8 cut(s) 68, 119, 258, 524, 786, 854, 1096, 1173
MluI ACGCGT 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 875
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 2 cut(s) 317, 710
Mox20I TGGCCA 1 cut(s) 875
MscI TGGCCA 1 cut(s) 875
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 1116
Msp20I TGGCCA 1 cut(s) 875
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 2 cut(s) 373, 831
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 6 cut(s) 947, 956, 1108, 1127, 1139, 1199
NarI GGCGCC 1 cut(s) 139
NdeII GATC 5 cut(s) 155, 289, 619, 732, 805
NheI GCTAGC 1 cut(s) 652
NlaIII CATG 2 cut(s) 746, 931
NlaIV GGNNCC 8 cut(s) 140, 227, 277, 545, 565, 716, 734, 1079
NmeAIII GCCGAG 1 cut(s) 288
PagI TCATGA 1 cut(s) 742
PceI AGGCCT 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 168
PctI GAATGC 2 cut(s) 373, 831
PfeI GAWTC 1 cut(s) 665
PflMI CCANNNNNTGG 1 cut(s) 791
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 3 cut(s) 640, 952, 1132
PleI GAGTC 1 cut(s) 300
PluTI GGCGCC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 360
PmlI CACGTG 1 cut(s) 360
PpsI GAGTC 1 cut(s) 300
Ppu21I YACGTR 1 cut(s) 360
PpuMI RGGWCCY 3 cut(s) 205, 276, 349
PshAI GACNNNNGTC 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 453
Psp5II RGGWCCY 3 cut(s) 205, 276, 349
Psp6I CCWGG 1 cut(s) 351
PspCI CACGTG 1 cut(s) 360
PspFI CCCAGC 2 cut(s) 51, 246
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 8 cut(s) 140, 227, 277, 545, 565, 716, 734, 1079
PspPI GGNCC 7 cut(s) 205, 276, 349, 544, 563, 714, 1077
PspPPI RGGWCCY 3 cut(s) 205, 276, 349
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 2 cut(s) 668, 924
PsuI RGATCY 3 cut(s) 155, 732, 805
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
RseI CAYNNNNRTG 1 cut(s) 1116
SacI GAGCTC 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 639, 951, 1131
Sau3AI GATC 5 cut(s) 155, 289, 619, 732, 805
Sau96I GGNCC 7 cut(s) 205, 276, 349, 544, 563, 714, 1077
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 2 cut(s) 106, 220
SfaNI GCATC 3 cut(s) 624, 763, 1023
SfcI CTRYAG 1 cut(s) 1131
SfoI GGCGCC 1 cut(s) 140
SinI GGWCC 5 cut(s) 205, 276, 349, 563, 1077
SmiMI CAYNNNNRTG 1 cut(s) 1116
SmlI CTYRAG 4 cut(s) 133, 410, 609, 703
SmoI CTYRAG 4 cut(s) 133, 410, 609, 703
Sse9I AATT 8 cut(s) 68, 119, 258, 524, 786, 854, 1096, 1173
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 4 cut(s) 114, 159, 588, 681
SspDI GGCGCC 1 cut(s) 138
SspI AATATT 1 cut(s) 1197
SspMI CTAG 2 cut(s) 209, 653
SstI GAGCTC 1 cut(s) 220
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 148, 490
TaiI ACGT 4 cut(s) 103, 362, 456, 730
TaqI TCGA 3 cut(s) 166, 304, 618
TasI AATT 8 cut(s) 68, 119, 258, 524, 786, 854, 1096, 1173
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 198, 495
TseI GCWGC 3 cut(s) 638, 950, 1130
TspDTI ATGAA 4 cut(s) 395, 731, 759, 1011
TspRI CASTG 2 cut(s) 198, 495
Van91I CCANNNNNTGG 1 cut(s) 791
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 5 cut(s) 205, 276, 349, 563, 1077
XapI RAATTY 2 cut(s) 119, 524
XspI CTAG 2 cut(s) 209, 653
ZraI GACGTC 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.