Rmu_sc0000761.1_g000013

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000761.1
Physical Location & Seq
Forward (+)
64691 .. 69740
5050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000761.1_g000013.1.cds

Sequence Viewer

Length: 1203 bp
atgaaagcaacaccgaagtcatctatggcgttagccataagtttgagaattttatcgaaggcgggaggcctacgagcaaaccctagcagagcggctgggtcttctttaactaaggacttcaacacgtatttagttaccctccgagaatggaaggagtacgaagaagctgtgaagcgcaaggacctagccggcgctcttgggttcttgcagtccctcgagacccagcaaaacccagttgagattgttaatgggtcgttgccggctgagtcgacccgggcgagtcaagagttgggttttctggggtgggagagggagagggattgggaggtcttggacacgtgtctcaatgctgacaacatgaagctggtgggcaaagcttatggctttctcaagaacagagggttcttggccaattttgggagatacaggaacattgtaatggagggaacacgtgatgttacaccaactgtgttgaagacttcaacaggtttagaagcatcgaaatttgctccaaaaaagtggggtctttcgggaagttctcgtcctgctctggttgcttttcttggcgggctatcttttcttctttctcaaggcattgacatcaggcctaaccttacggtaatattggggctagcatttgcggactctatcttccttggtggttgctgcttagctcaaatctccagttattggcctccaaatagacgccggatcctcatccatgaagcagggcacctcctaacggcttatctaatgggttgcccaattcgtggggtgatattagatccaattgttgcagtgcagatgggaattcaagggcaggcgggaactcagttttgggatgagaaaatggccagtgaccttgctgaaggaagacttgatggtagtgcttttgacaggtactgcatggtgctttttgcgggcattgctgctgaagctcttatttatggggaagcagagggtggagaaaatgatgaaaatttatttaggggcatctgtcttcttctgcaacccccgttatcggtcgctgagatgtcaaatcaagcaagatggtcccttctgcaatcttacaatttgctcaaatggcataaaagtgcacaccgagctgcagttaaagctttagaaagtcgcagcagtttgagtgttgtaattagaagtattgaggaagcaatggcagcaaataggggaacaaaagtaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

43.69

Weight (kDa)

8.93

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 732
AccB7I CCANNNNNTGG 2 cut(s) 690, 770
AccBSI CCGCTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 269
AciI CCGC 6 cut(s) 62, 92, 567, 641, 824, 920
AclWI GGATC 3 cut(s) 706, 719, 779
AcoI YGGCCR 2 cut(s) 408, 852
AcsI RAATTY 4 cut(s) 48, 503, 810, 979
AcuI CTGAAG 2 cut(s) 888, 954
AcvI CACGTG 2 cut(s) 339, 452
AcyI GRCGYC 1 cut(s) 706
AfaI GTAC 2 cut(s) 158, 902
AfiI CCNNNNNNNGG 5 cut(s) 417, 690, 742, 770, 1021
AflIII ACRYGT 4 cut(s) 123, 336, 338, 449
AgsI TTSAA 4 cut(s) 121, 475, 483, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AluBI AGCT 7 cut(s) 167, 364, 377, 674, 938, 1106, 1118
AluI AGCT 7 cut(s) 167, 364, 377, 674, 938, 1106, 1118
Alw21I GWGCWC 1 cut(s) 1099
Alw26I GTCTC 2 cut(s) 212, 347
Alw44I GTGCAC 1 cut(s) 1095
AlwI GGATC 3 cut(s) 706, 719, 779
AlwNI CAGNNNCTG 1 cut(s) 903
Ama87I CYCGRG 2 cut(s) 215, 273
AoxI GGCC 5 cut(s) 67, 408, 605, 692, 852
ApaLI GTGCAC 1 cut(s) 1095
ApeKI GCWGC 5 cut(s) 666, 929, 1106, 1131, 1175
ApoI RAATTY 4 cut(s) 48, 503, 810, 979
AspLEI GCGC 2 cut(s) 177, 194
AspS9I GGNCC 2 cut(s) 181, 1053
AsuC2I CCSGG 2 cut(s) 274, 275
AsuHPI GGTGA 1 cut(s) 787
AsuNHI GCTAGC 1 cut(s) 631
AvaI CYCGRG 2 cut(s) 215, 273
AvaII GGWCC 2 cut(s) 181, 1053
BaeGI GKGCMC 2 cut(s) 735, 1099
BalI TGGCCA 2 cut(s) 410, 854
BamHI GGATCC 1 cut(s) 711
BanI GGYRCC 1 cut(s) 732
BbrPI CACGTG 2 cut(s) 339, 452
BbsI GAAGAC 4 cut(s) 93, 482, 880, 992
Bbv12I GWGCWC 1 cut(s) 1099
BbvI GCAGC 5 cut(s) 653, 916, 1093, 1143, 1187
BccI CCATC 3 cut(s) 799, 875, 1044
BceAI ACGGC 1 cut(s) 759
BcnI CCSGG 2 cut(s) 274, 275
BcoDI GTCTC 2 cut(s) 212, 347
BfaI CTAG 3 cut(s) 84, 185, 632
BfmI CTRYAG 1 cut(s) 1107
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 6 cut(s) 93, 667, 930, 1107, 1132, 1176
BlpI GCTNAGC 1 cut(s) 670
BlsI GCNGC 6 cut(s) 94, 668, 931, 1108, 1133, 1177
Bme1390I CCNGG 2 cut(s) 274, 275
Bme18I GGWCC 2 cut(s) 181, 1053
BmeT110I CYCGRG 2 cut(s) 215, 273
BmgT120I GGNCC 2 cut(s) 181, 1053
BmiI GGNNCC 3 cut(s) 713, 734, 1055
BmrFI CCNGG 2 cut(s) 274, 275
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 506, 1002
BmtI GCTAGC 1 cut(s) 635
BmuI ACTGGG 1 cut(s) 227
BoxI GACNNNNGTC 1 cut(s) 339
BpiI GAAGAC 4 cut(s) 93, 482, 880, 992
BpmI CTGGAG 1 cut(s) 667
Bpu1102I GCTNAGC 1 cut(s) 670
BpuEI CTTGAG 2 cut(s) 374, 573
BpuMI CCSGG 2 cut(s) 274, 275
BsaAI YACGTR 3 cut(s) 126, 339, 452
BsaBI GATNNNNATC 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 706
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 273, 655
Bsc4I CCNNNNNNNGG 5 cut(s) 417, 690, 742, 770, 1021
Bse118I RCCGGY 2 cut(s) 188, 259
Bse1I ACTGG 3 cut(s) 233, 684, 855
Bse3DI GCAATG 2 cut(s) 924, 1176
Bse8I GATNNNNATC 1 cut(s) 716
BseDI CCNNGG 2 cut(s) 273, 655
BseGI GGATG 2 cut(s) 717, 847
BseJI GATNNNNATC 1 cut(s) 716
BseLI CCNNNNNNNGG 5 cut(s) 417, 690, 742, 770, 1021
BseMI GCAATG 2 cut(s) 924, 1176
BseMII CTCAG 3 cut(s) 255, 845, 1020
BseNI ACTGG 3 cut(s) 233, 684, 855
BseSI GKGCMC 2 cut(s) 735, 1099
BseXI GCAGC 5 cut(s) 653, 916, 1093, 1143, 1187
BseYI CCCAGC 2 cut(s) 95, 222
BsgI GTGCAG 1 cut(s) 821
Bsh1285I CGRYCG 1 cut(s) 1026
BshFI GGCC 5 cut(s) 69, 410, 607, 694, 854
BshNI GGYRCC 1 cut(s) 732
BsiEI CGRYCG 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 1099
BsiHKCI CYCGRG 2 cut(s) 215, 273
BsiSI CCGG 4 cut(s) 189, 260, 274, 709
BslFI GGGAC 2 cut(s) 196, 1039
BslI CCNNNNNNNGG 5 cut(s) 417, 690, 742, 770, 1021
BsmAI GTCTC 2 cut(s) 212, 347
BsmFI GGGAC 2 cut(s) 196, 1039
BsnI GGCC 5 cut(s) 69, 410, 607, 694, 854
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 2 cut(s) 215, 273
Bsp1286I GDGCHC 2 cut(s) 735, 1099
Bsp143I GATC 2 cut(s) 711, 784
Bsp1720I GCTNAGC 1 cut(s) 670
BspACI CCGC 6 cut(s) 62, 92, 567, 641, 824, 920
BspANI GGCC 5 cut(s) 69, 410, 607, 694, 854
BspCNI CTCAG 3 cut(s) 256, 844, 1021
BspLI GGNNCC 3 cut(s) 713, 734, 1055
BspMAI CTGCAG 1 cut(s) 1111
BspOI GCTAGC 1 cut(s) 635
BspPI GGATC 3 cut(s) 706, 719, 779
BspT107I GGYRCC 1 cut(s) 732
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 924, 1176
BsrFI RCCGGY 2 cut(s) 188, 259
BsrI ACTGG 3 cut(s) 233, 684, 855
BssAI RCCGGY 2 cut(s) 188, 259
BssECI CCNNGG 2 cut(s) 273, 655
BssMI GATC 2 cut(s) 711, 784
BssNI GRCGYC 1 cut(s) 706
BssT1I CCWWGG 1 cut(s) 655
Bst4CI ACNGT 2 cut(s) 469, 619
BstACI GRCGYC 1 cut(s) 706
BstBAI YACGTR 3 cut(s) 126, 339, 452
BstC8I GCNNGC 6 cut(s) 190, 261, 569, 633, 822, 922
BstDEI CTNAG 5 cut(s) 111, 264, 670, 831, 1029
BstF5I GGATG 2 cut(s) 717, 847
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 177, 194
BstKTI GATC 2 cut(s) 714, 787
BstMAI GTCTC 2 cut(s) 212, 347
BstMBI GATC 2 cut(s) 711, 784
BstMCI CGRYCG 1 cut(s) 1026
BstMWI GCNNNNNNNGC 7 cut(s) 554, 926, 935, 1084, 1103, 1115, 1175
BstPAI GACNNNNGTC 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 272, 273
BstSFI CTRYAG 1 cut(s) 1107
BstSLI GKGCMC 2 cut(s) 735, 1099
BstV1I GCAGC 5 cut(s) 653, 916, 1093, 1143, 1187
BstV2I GAAGAC 4 cut(s) 93, 482, 880, 992
BstX2I RGATCY 2 cut(s) 711, 784
BstXI CCANNNNNNTGG 1 cut(s) 519
BstYI RGATCY 2 cut(s) 711, 784
BsuRI GGCC 5 cut(s) 69, 410, 607, 694, 854
BtsCI GGATG 2 cut(s) 717, 847
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 2 cut(s) 804, 862
Cac8I GCNNGC 6 cut(s) 190, 261, 569, 633, 822, 922
CaiI CAGNNNCTG 1 cut(s) 903
CfoI GCGC 2 cut(s) 177, 194
Cfr10I RCCGGY 2 cut(s) 188, 259
Cfr13I GGNCC 2 cut(s) 181, 1053
Cfr9I CCCGGG 1 cut(s) 273
CseI GACGC 1 cut(s) 714
Csp6I GTAC 2 cut(s) 157, 901
CviAII CATG 3 cut(s) 358, 722, 907
CviQI GTAC 2 cut(s) 157, 901
DdeI CTNAG 5 cut(s) 111, 264, 670, 831, 1029
DpnI GATC 2 cut(s) 713, 786
DpnII GATC 2 cut(s) 711, 784
EaeI YGGCCR 2 cut(s) 408, 852
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 2 cut(s) 69, 607
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 181, 1053
Eco57I CTGAAG 2 cut(s) 888, 954
Eco72I CACGTG 2 cut(s) 339, 452
Eco88I CYCGRG 2 cut(s) 215, 273
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 3 cut(s) 361, 725, 910
FaiI YATR 8 cut(s) 26, 38, 359, 381, 723, 908, 948, 1089
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 2 cut(s) 196, 1039
FatI CATG 3 cut(s) 357, 721, 906
FauI CCCGC 4 cut(s) 55, 560, 817, 913
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 6 cut(s) 93, 667, 930, 1107, 1132, 1176
FokI GGATG 2 cut(s) 704, 854
Fsp4HI GCNGC 6 cut(s) 93, 667, 930, 1107, 1132, 1176
FspBI CTAG 3 cut(s) 84, 185, 632
GlaI GCGC 2 cut(s) 176, 193
GluI GCNGC 6 cut(s) 93, 667, 930, 1107, 1132, 1176
GsaI CCCAGC 2 cut(s) 99, 226
GsuI CTGGAG 1 cut(s) 667
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 5 cut(s) 69, 410, 607, 694, 854
HapII CCGG 4 cut(s) 189, 260, 274, 709
HgaI GACGC 1 cut(s) 714
HhaI GCGC 2 cut(s) 177, 194
Hin1I GRCGYC 1 cut(s) 706
Hin1II CATG 3 cut(s) 361, 725, 910
Hin6I GCGC 2 cut(s) 175, 192
HinP1I GCGC 2 cut(s) 175, 192
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 2 cut(s) 375, 1116
HinfI GANTC 3 cut(s) 266, 280, 644
HpaII CCGG 4 cut(s) 189, 260, 274, 709
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 2 cut(s) 270, 1097
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 4 cut(s) 217, 284, 391, 531
Hpy8I GTNNAC 2 cut(s) 270, 1097
HpyAV CCTTC 4 cut(s) 52, 145, 863, 1067
HpyCH4III ACNGT 2 cut(s) 469, 619
HpyCH4IV ACGT 3 cut(s) 125, 338, 451
HpyCH4V TGCA 8 cut(s) 208, 797, 802, 906, 1009, 1063, 1097, 1109
HpyF10VI GCNNNNNNNGC 7 cut(s) 554, 926, 935, 1084, 1103, 1115, 1175
HpyF3I CTNAG 5 cut(s) 111, 264, 670, 831, 1029
HpySE526I ACGT 3 cut(s) 125, 338, 451
Hsp92I GRCGYC 1 cut(s) 706
Hsp92II CATG 3 cut(s) 361, 725, 910
HspAI GCGC 2 cut(s) 175, 192
KroI GCCGGC 2 cut(s) 188, 259
KroNI GCCGGC 2 cut(s) 190, 261
Kzo9I GATC 2 cut(s) 711, 784
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 5 cut(s) 653, 916, 1093, 1143, 1187
LweI GCATC 2 cut(s) 506, 1002
MaeI CTAG 3 cut(s) 84, 185, 632
MaeII ACGT 3 cut(s) 125, 338, 451
MaeIII GTNAC 3 cut(s) 133, 457, 857
MalI GATC 2 cut(s) 713, 786
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 711, 784
MboII GAAGA 8 cut(s) 93, 173, 487, 572, 643, 885, 992, 995
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 2 cut(s) 711, 784
MhlI GDGCHC 2 cut(s) 735, 1099
MlsI TGGCCA 2 cut(s) 410, 854
MluNI TGGCCA 2 cut(s) 410, 854
MlyI GAGTC 3 cut(s) 275, 289, 638
Mox20I TGGCCA 2 cut(s) 410, 854
MroNI GCCGGC 2 cut(s) 188, 259
MscI TGGCCA 2 cut(s) 410, 854
MseI TTAA 4 cut(s) 107, 246, 1113, 1201
MslI CAYNNNNRTG 2 cut(s) 437, 1092
Msp20I TGGCCA 2 cut(s) 410, 854
MspI CCGG 4 cut(s) 189, 260, 274, 709
MspR9I CCNGG 2 cut(s) 274, 275
MunI CAATTG 1 cut(s) 789
MwoI GCNNNNNNNGC 7 cut(s) 554, 926, 935, 1084, 1103, 1115, 1175
NaeI GCCGGC 2 cut(s) 190, 261
NciI CCSGG 2 cut(s) 274, 275
NdeII GATC 2 cut(s) 711, 784
NgoMIV GCCGGC 2 cut(s) 188, 259
NheI GCTAGC 1 cut(s) 631
NlaIII CATG 3 cut(s) 361, 725, 910
NlaIV GGNNCC 3 cut(s) 713, 734, 1055
NmuCI GTSAC 1 cut(s) 857
PaeR7I CTCGAG 1 cut(s) 215
PceI AGGCCT 2 cut(s) 69, 607
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PdiI GCCGGC 2 cut(s) 190, 261
PflMI CCANNNNNTGG 2 cut(s) 690, 770
PkrI GCNGC 6 cut(s) 94, 668, 931, 1108, 1133, 1177
PleI GAGTC 3 cut(s) 274, 288, 638
PmaCI CACGTG 2 cut(s) 339, 452
PmlI CACGTG 2 cut(s) 339, 452
PpsI GAGTC 3 cut(s) 274, 288, 638
Ppu21I YACGTR 3 cut(s) 126, 339, 452
PpuMI RGGWCCY 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 181
PspCI CACGTG 2 cut(s) 339, 452
PspFI CCCAGC 2 cut(s) 95, 222
PspN4I GGNNCC 3 cut(s) 713, 734, 1055
PspPI GGNCC 2 cut(s) 181, 1053
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 1 cut(s) 1111
PstNI CAGNNNCTG 1 cut(s) 903
PsuI RGATCY 2 cut(s) 711, 784
RsaI GTAC 2 cut(s) 158, 902
RsaNI GTAC 2 cut(s) 157, 901
RseI CAYNNNNRTG 2 cut(s) 437, 1092
SalI GTCGAC 1 cut(s) 268
SaqAI TTAA 4 cut(s) 107, 246, 1113, 1201
SatI GCNGC 6 cut(s) 93, 667, 930, 1107, 1132, 1176
Sau3AI GATC 2 cut(s) 711, 784
Sau96I GGNCC 2 cut(s) 181, 1053
SchI GAGTC 3 cut(s) 275, 289, 638
ScrFI CCNGG 2 cut(s) 274, 275
SduI GDGCHC 2 cut(s) 735, 1099
SfaNI GCATC 2 cut(s) 506, 1002
SfcI CTRYAG 1 cut(s) 1107
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 2 cut(s) 181, 1053
SlaI CTCGAG 1 cut(s) 215
SmaI CCCGGG 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 437, 1092
SmlI CTYRAG 3 cut(s) 215, 389, 588
SmoI CTYRAG 3 cut(s) 215, 389, 588
SseBI AGGCCT 2 cut(s) 69, 607
SsiI CCGC 6 cut(s) 62, 92, 567, 641, 824, 920
SspI AATATT 1 cut(s) 624
SspMI CTAG 3 cut(s) 84, 185, 632
StuI AGGCCT 2 cut(s) 69, 607
StyD4I CCNGG 2 cut(s) 272, 273
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 2 cut(s) 469, 619
TaiI ACGT 3 cut(s) 128, 341, 454
TaqI TCGA 4 cut(s) 56, 216, 269, 500
TaqII GACCGA 1 cut(s) 1012
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 4 cut(s) 107, 246, 1113, 1201
Tru9I TTAA 4 cut(s) 107, 246, 1113, 1201
TscAI CASTG 2 cut(s) 804, 862
TseFI GTSAC 1 cut(s) 857
TseI GCWGC 5 cut(s) 666, 929, 1106, 1131, 1175
Tsp45I GTSAC 1 cut(s) 857
TspDTI ATGAA 4 cut(s) 17, 374, 738, 990
TspMI CCCGGG 1 cut(s) 273
TspRI CASTG 2 cut(s) 804, 862
Van91I CCANNNNNTGG 2 cut(s) 690, 770
VneI GTGCAC 1 cut(s) 1095
VpaK11BI GGWCC 2 cut(s) 181, 1053
XapI RAATTY 4 cut(s) 48, 503, 810, 979
XhoI CTCGAG 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 3 cut(s) 84, 185, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.