Rh5CG188700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
18814509 .. 18817758
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG188700.1

Sequence Viewer

Length: 1020 bp
ATGGCAAAATCCAACTTTCCTAAACCGGTAAAACTCCCAACGGGAATAAACCAACCGCTTCCAACGGTCTGTCACTCCAATCTCATGGCTTTTGCTCCTCCTCCAAACCCCAACCCAATCCCTCACTTCCTCTCTCCCACTCCATTCTCTCCCCAAATTTCCCTCCTTTTTCCCAAAACACCCCCGCATTCACCACCGCCCTCCGCCCCTCTTCGCGCCTCAAGGCGCCAAACCGTCCCAGCTTCAGCCCTCCGAGAATGGAAGGAGTACGAAGAAGCCGTGAAGCGCAAGGACCTAGCCGGCGCTCTTGGGTTCTTGCAGTCCCTCGAGACCCAGCAAAACCCAGTTGAGATTGTCAATGGGTCGCTGCCGGCTGAGTCGACCCGGCCGAGTCAAGAGTTGGGTTTCGTGGGGTGGGAGAGGGAGAGGGATTGGGAGGTCTTGGACACGTGTCTCAATGCTGACAACATGAAGCTGGTGGGCAAAGCTTATGGCTTTCTCAAGAACAGAGGGTTCTTGGCCAATTTTGGGAGATACAGGAACATTGTAATGGAGGGAACACGTGATGTTACACCAACTGTGTTGAAGACTTCAACAGGTTTAGAAGCATCGAAATTTGCTCCAAAAAAGTGGGGTCTTTCGGGAAGTTCTCGTCCTGCTCTGGTTGCTTTTCTTGGCGGGCTATCTTTTCTTCTTTCTCAAGGCATTGACATCAGGCCTAACCTTACGGTAATATTGGGGCTAGCATTTGCGGACTCTATCTTCCTTGGTGGTTGCTGCTTAGCTCAAATCTCCAGTTATTGGCCTCCAAATAGACGCCGGATCCTCATCCATGAAGCAGGGCACCTCCTAACGGCTTATCTAATGGGTTGCCCAATTCGTGGGGTGATATTAGATCCAATTGTTGCAGTGCAGATGGGAATTCAAGGGCAGGCGGGAACTCAGTTTTGGGATGAGAAAATGGCCAGTGACCTTGCTGAAGGAAGACTTGATGGTAGTGCTTTTGACAGGTGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.11

Weight (kDa)

9.22

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 225, 843
AccB7I CCANNNNNTGG 2 cut(s) 801, 881
AccI GTMKAC 1 cut(s) 380
AccII CGCG 1 cut(s) 216
AciI CCGC 7 cut(s) 56, 185, 197, 204, 678, 752, 935
AclWI GGATC 3 cut(s) 817, 830, 890
AcoI YGGCCR 3 cut(s) 386, 519, 963
AcsI RAATTY 3 cut(s) 156, 614, 921
AcuI CTGAAG 2 cut(s) 228, 999
AcvI CACGTG 2 cut(s) 450, 563
AcyI GRCGYC 2 cut(s) 226, 817
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
AflIII ACRYGT 3 cut(s) 447, 449, 560
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 586, 594, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 931, 963
AluBI AGCT 4 cut(s) 242, 475, 488, 785
AluI AGCT 4 cut(s) 242, 475, 488, 785
Alw26I GTCTC 2 cut(s) 323, 458
AlwI GGATC 3 cut(s) 817, 830, 890
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 5 cut(s) 386, 519, 716, 803, 963
ApeKI GCWGC 2 cut(s) 367, 777
ApoI RAATTY 3 cut(s) 156, 614, 921
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 4 cut(s) 218, 228, 288, 305
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 183, 898
AsuNHI GCTAGC 1 cut(s) 742
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 2 cut(s) 521, 965
BamHI GGATCC 1 cut(s) 822
BanI GGYRCC 2 cut(s) 225, 843
BbrPI CACGTG 2 cut(s) 450, 563
BbsI GAAGAC 2 cut(s) 593, 991
BbvI GCAGC 2 cut(s) 354, 764
BccI CCATC 2 cut(s) 910, 986
BceAI ACGGC 2 cut(s) 263, 870
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 323, 458
BfaI CTAG 2 cut(s) 296, 743
BfoI RGCGCY 2 cut(s) 229, 306
BisI GCNGC 2 cut(s) 368, 778
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 2 cut(s) 369, 779
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 227, 824, 845
BmrFI CCNGG 1 cut(s) 385
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 617
BmtI GCTAGC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 593, 991
BpmI CTGGAG 1 cut(s) 778
Bpu1102I GCTNAGC 1 cut(s) 781
BpuEI CTTGAG 3 cut(s) 205, 485, 684
BpuMI CCSGG 1 cut(s) 385
BsaAI YACGTR 2 cut(s) 450, 563
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 2 cut(s) 226, 817
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 766
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
Bse118I RCCGGY 3 cut(s) 25, 299, 370
Bse1I ACTGG 3 cut(s) 344, 795, 966
Bse8I GATNNNNATC 1 cut(s) 827
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 2 cut(s) 828, 958
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
BseMII CTCAG 2 cut(s) 366, 956
BseNI ACTGG 3 cut(s) 344, 795, 966
BseRI GAGGAG 2 cut(s) 87, 90
BseSI GKGCMC 1 cut(s) 846
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 354, 764
BseYI CCCAGC 2 cut(s) 238, 333
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 5 cut(s) 388, 521, 718, 805, 965
BshNI GGYRCC 2 cut(s) 225, 843
BshTI ACCGGT 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 5 cut(s) 26, 300, 371, 385, 820
BslFI GGGAC 2 cut(s) 221, 307
BslI CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
BsmAI GTCTC 2 cut(s) 323, 458
BsmFI GGGAC 2 cut(s) 221, 307
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 5 cut(s) 388, 521, 718, 805, 965
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 2 cut(s) 822, 895
Bsp1720I GCTNAGC 1 cut(s) 781
BspACI CCGC 7 cut(s) 56, 185, 197, 204, 678, 752, 935
BspANI GGCC 5 cut(s) 388, 521, 718, 805, 965
BspCNI CTCAG 2 cut(s) 367, 955
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 227, 824, 845
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 3 cut(s) 817, 830, 890
BspT107I GGYRCC 2 cut(s) 225, 843
BspTNI GGTCTC 1 cut(s) 323
BsrFI RCCGGY 3 cut(s) 25, 299, 370
BsrI ACTGG 3 cut(s) 344, 795, 966
BssAI RCCGGY 3 cut(s) 25, 299, 370
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 2 cut(s) 822, 895
BssNI GRCGYC 2 cut(s) 226, 817
BssT1I CCWWGG 1 cut(s) 766
Bst4CI ACNGT 4 cut(s) 67, 235, 580, 730
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 2 cut(s) 226, 817
BstBAI YACGTR 2 cut(s) 450, 563
BstC8I GCNNGC 5 cut(s) 301, 372, 680, 744, 933
BstDEI CTNAG 3 cut(s) 375, 781, 942
BstF5I GGATG 2 cut(s) 828, 958
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 2 cut(s) 229, 306
BstHHI GCGC 4 cut(s) 218, 228, 288, 305
BstKTI GATC 2 cut(s) 825, 898
BstMAI GTCTC 2 cut(s) 323, 458
BstMBI GATC 2 cut(s) 822, 895
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 354, 764
BstV2I GAAGAC 2 cut(s) 593, 991
BstX2I RGATCY 2 cut(s) 822, 895
BstXI CCANNNNNNTGG 2 cut(s) 85, 630
BstYI RGATCY 2 cut(s) 822, 895
BstZI CGGCCG 1 cut(s) 386
BsuRI GGCC 5 cut(s) 388, 521, 718, 805, 965
BtsCI GGATG 2 cut(s) 828, 958
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 915, 973
Cac8I GCNNGC 5 cut(s) 301, 372, 680, 744, 933
CfoI GCGC 4 cut(s) 218, 228, 288, 305
Cfr10I RCCGGY 3 cut(s) 25, 299, 370
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 3 cut(s) 85, 469, 833
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 3 cut(s) 375, 781, 942
DinI GGCGCC 1 cut(s) 227
DpnI GATC 2 cut(s) 824, 897
DpnII GATC 2 cut(s) 822, 895
EaeI YGGCCR 3 cut(s) 386, 519, 963
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 766
Eco147I AGGCCT 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 228, 999
Eco72I CACGTG 2 cut(s) 450, 563
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 921
EcoT14I CCWWGG 1 cut(s) 766
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 3 cut(s) 88, 472, 836
FaiI YATR 5 cut(s) 86, 470, 492, 834, 1018
FalI AAGNNNNNCTT 2 cut(s) 972, 1004
FaqI GGGAC 2 cut(s) 221, 307
FatI CATG 3 cut(s) 84, 468, 832
FauI CCCGC 3 cut(s) 192, 671, 928
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 368, 778
FokI GGATG 2 cut(s) 815, 965
Fsp4HI GCNGC 2 cut(s) 368, 778
FspBI CTAG 2 cut(s) 296, 743
GlaI GCGC 4 cut(s) 217, 227, 287, 304
GluI GCNGC 2 cut(s) 368, 778
GsaI CCCAGC 2 cut(s) 242, 337
GsuI CTGGAG 1 cut(s) 778
HaeII RGCGCY 2 cut(s) 229, 306
HaeIII GGCC 5 cut(s) 388, 521, 718, 805, 965
HapII CCGG 5 cut(s) 26, 300, 371, 385, 820
HgaI GACGC 1 cut(s) 825
HhaI GCGC 4 cut(s) 218, 228, 288, 305
Hin1I GRCGYC 2 cut(s) 226, 817
Hin1II CATG 3 cut(s) 88, 472, 836
Hin6I GCGC 4 cut(s) 216, 226, 286, 303
HinP1I GCGC 4 cut(s) 216, 226, 286, 303
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 377, 391, 755
HpaII CCGG 5 cut(s) 26, 300, 371, 385, 820
HphI GGTGA 2 cut(s) 183, 898
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 4 cut(s) 328, 395, 502, 642
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 256, 974
HpyCH4III ACNGT 4 cut(s) 67, 235, 580, 730
HpyCH4IV ACGT 2 cut(s) 449, 562
HpyCH4V TGCA 3 cut(s) 319, 908, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 3 cut(s) 375, 781, 942
HpySE526I ACGT 2 cut(s) 449, 562
Hsp92I GRCGYC 2 cut(s) 226, 817
Hsp92II CATG 3 cut(s) 88, 472, 836
HspAI GCGC 4 cut(s) 216, 226, 286, 303
KasI GGCGCC 1 cut(s) 225
KroI GCCGGC 2 cut(s) 299, 370
KroNI GCCGGC 2 cut(s) 301, 372
Kzo9I GATC 2 cut(s) 822, 895
LmnI GCTCC 2 cut(s) 100, 625
Lsp1109I GCAGC 2 cut(s) 354, 764
LweI GCATC 1 cut(s) 617
MaeI CTAG 2 cut(s) 296, 743
MaeII ACGT 2 cut(s) 449, 562
MaeIII GTNAC 3 cut(s) 71, 568, 968
MalI GATC 2 cut(s) 824, 897
MboI GATC 2 cut(s) 822, 895
MboII GAAGA 6 cut(s) 203, 284, 598, 683, 754, 996
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 2 cut(s) 822, 895
MhlI GDGCHC 1 cut(s) 846
MlsI TGGCCA 2 cut(s) 521, 965
MluCI AATT 6 cut(s) 156, 523, 614, 876, 900, 921
MluNI TGGCCA 2 cut(s) 521, 965
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 3 cut(s) 386, 400, 749
MmeI TCCRAC 2 cut(s) 36, 86
Mox20I TGGCCA 2 cut(s) 521, 965
MroNI GCCGGC 2 cut(s) 299, 370
MscI TGGCCA 2 cut(s) 521, 965
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 2 cut(s) 521, 965
MspI CCGG 5 cut(s) 26, 300, 371, 385, 820
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 665
NaeI GCCGGC 2 cut(s) 301, 372
NarI GGCGCC 1 cut(s) 226
NciI CCSGG 1 cut(s) 385
NdeII GATC 2 cut(s) 822, 895
NgoMIV GCCGGC 2 cut(s) 299, 370
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 3 cut(s) 88, 472, 836
NlaIV GGNNCC 3 cut(s) 227, 824, 845
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 71, 968
PaeR7I CTCGAG 1 cut(s) 326
PceI AGGCCT 1 cut(s) 718
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 386
PctI GAATGC 1 cut(s) 187
PdiI GCCGGC 2 cut(s) 301, 372
PflMI CCANNNNNTGG 2 cut(s) 801, 881
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 2 cut(s) 369, 779
PleI GAGTC 3 cut(s) 385, 399, 749
PluTI GGCGCC 1 cut(s) 229
PmaCI CACGTG 2 cut(s) 450, 563
PmlI CACGTG 2 cut(s) 450, 563
PpsI GAGTC 3 cut(s) 385, 399, 749
Ppu21I YACGTR 2 cut(s) 450, 563
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 292
PspCI CACGTG 2 cut(s) 450, 563
PspFI CCCAGC 2 cut(s) 238, 333
PspN4I GGNNCC 3 cut(s) 227, 824, 845
PspPI GGNCC 1 cut(s) 292
PspPPI RGGWCCY 1 cut(s) 292
PsuI RGATCY 2 cut(s) 822, 895
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 548
SalI GTCGAC 1 cut(s) 379
SatI GCNGC 2 cut(s) 368, 778
Sau3AI GATC 2 cut(s) 822, 895
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 3 cut(s) 386, 400, 749
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 1 cut(s) 617
SfoI GGCGCC 1 cut(s) 227
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 4 cut(s) 220, 326, 500, 699
SmoI CTYRAG 4 cut(s) 220, 326, 500, 699
Sse9I AATT 6 cut(s) 156, 523, 614, 876, 900, 921
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 7 cut(s) 56, 185, 197, 204, 678, 752, 935
SspDI GGCGCC 1 cut(s) 225
SspI AATATT 1 cut(s) 735
SspMI CTAG 2 cut(s) 296, 743
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 4 cut(s) 67, 235, 580, 730
TaiI ACGT 2 cut(s) 452, 565
TaqI TCGA 3 cut(s) 327, 380, 611
TasI AATT 6 cut(s) 156, 523, 614, 876, 900, 921
TscAI CASTG 2 cut(s) 915, 973
TseFI GTSAC 2 cut(s) 71, 968
TseI GCWGC 2 cut(s) 367, 777
Tsp45I GTSAC 2 cut(s) 71, 968
TspDTI ATGAA 2 cut(s) 485, 849
TspRI CASTG 2 cut(s) 915, 973
Van91I CCANNNNNTGG 2 cut(s) 801, 881
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 3 cut(s) 156, 614, 921
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 2 cut(s) 296, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.