Rh5AG175100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
19365156 .. 19368630
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG175100.1

Sequence Viewer

Length: 1155 bp
ATGGCAAAATCCTACTTTCCTAAACCGGGAAAACTCCCAACGGGAATAAACCAACCGCTTCCAACGGTCTGTCACTCCAATCTCATGGCTTTTGCTCCTCCTCCAAACCCCAACCCAATCCCTCACTTCCTCTCTCCCACTCCATTCTCTCCCCAAATTTCCCTCTTTTTTCCCAAAACACCCCCGCATTCACCACCGCCCTCCGCCCCTCTTCGCGCCTCAAGGCGCCAAACCGTCCCAACTTCAGCCCTCCGAGAATGGAAGGAGTACGAAGAAGCTGTGAAGCGCAAGGACCTAGCCGGCGCTCTTGGGTTCTTGCAGTCCCTCGAGACCCAGCAAAACCCAGTTGAGATTGTCAATGGGTCGCTGCCGGCTGAGTCGACCCGGCCGAGTCAAGAGTTGGGTTTCGTGGGGTGGGAGAGGGAGAGGGATTGGGAGGTCTTGGACACGTGTCTCAATGCTGACAATATGAAGCTGGTGGGCAAAGCTTATGGCTTTCTCAAGAACAGAGGGTTCTTGGCCAATTTTGGGAGATACAGGAACATTGTAATGGAGGGGGCACGTGATGTTACACCAACTGTGTTGAAGAATTCAACAGGTTTAGAAGCATTGAAATTTGCTCCAAAAAAGTGGGGTCTTTCGGGAAGTTCTCGTCCTGCTCTGGTTGCTTTTCTTGGCGGGCTATCTTTTCTTCTTTCTCAAGGCATTGACATCAGGCCTAACCTTACGGTAATGTTGGGGCTAGCATTTGCGGACTCTATCTTCCTTGGTGGTTGCTGCTTAGCTCAAATCTCCAGTTATTGGCCTCCAAATAGACGTCGGATCCTCATCCATGAAGCAGGGCACCTCCTAACGGCTTATCTAATGGGTTGCCCAATTCGTGGGGTGATATTAGATCCAATTGTTGCAGTGCAGATGGGAATTCAAGGGCAGGCGGGAACTCAGTTTTGGGATGAGAAAATGGCCAGTGACCTTGCTGAAGGAAGACTTGATGGTAGTGCTTTTGACAGGTACTGCATGGTGCTTTTTGCAGGCATTGCTGCTGAAGCTCTTATTTATGGGGAGGCAGAGGGTGGAGAAAATGATGAAAATTTATTTAGGGGCATCTGTCTTCTTCTGCAACCCCCGTTATCTGTCGCTGAGGTATCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

41.89

Weight (kDa)

7.58

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 820
AccB1I GGYRCC 2 cut(s) 225, 843
AccB7I CCANNNNNTGG 2 cut(s) 801, 881
AccI GTMKAC 1 cut(s) 380
AccII CGCG 1 cut(s) 216
AciI CCGC 7 cut(s) 56, 185, 197, 204, 678, 752, 935
AclWI GGATC 3 cut(s) 817, 830, 890
AcoI YGGCCR 3 cut(s) 386, 519, 963
AcsI RAATTY 5 cut(s) 156, 589, 614, 921, 1090
AcuI CTGAAG 3 cut(s) 228, 999, 1065
AcvI CACGTG 2 cut(s) 450, 563
AcyI GRCGYC 2 cut(s) 226, 817
AfaI GTAC 2 cut(s) 269, 1013
AfiI CCNNNNNNNGG 5 cut(s) 26, 528, 801, 853, 881
AflIII ACRYGT 2 cut(s) 447, 449
AgsI TTSAA 4 cut(s) 586, 594, 613, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 931, 963
AluBI AGCT 5 cut(s) 278, 475, 488, 785, 1049
AluI AGCT 5 cut(s) 278, 475, 488, 785, 1049
Alw26I GTCTC 2 cut(s) 323, 458
AlwI GGATC 3 cut(s) 817, 830, 890
AlwNI CAGNNNCTG 1 cut(s) 1014
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 5 cut(s) 386, 519, 716, 803, 963
ApeKI GCWGC 3 cut(s) 367, 777, 1040
ApoI RAATTY 5 cut(s) 156, 589, 614, 921, 1090
AspLEI GCGC 4 cut(s) 218, 228, 288, 305
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 2 cut(s) 27, 385
AsuHPI GGTGA 2 cut(s) 183, 898
AsuNHI GCTAGC 1 cut(s) 742
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 2 cut(s) 562, 846
BalI TGGCCA 2 cut(s) 521, 965
BamHI GGATCC 1 cut(s) 822
BanI GGYRCC 2 cut(s) 225, 843
BbrPI CACGTG 2 cut(s) 450, 563
BbsI GAAGAC 2 cut(s) 991, 1103
BbvCI CCTCAGC 1 cut(s) 1140
BbvI GCAGC 3 cut(s) 354, 764, 1027
BccI CCATC 2 cut(s) 910, 986
BceAI ACGGC 1 cut(s) 870
BcnI CCSGG 2 cut(s) 27, 385
BcoDI GTCTC 2 cut(s) 323, 458
BfaI CTAG 2 cut(s) 296, 743
BfoI RGCGCY 2 cut(s) 229, 306
BisI GCNGC 3 cut(s) 368, 778, 1041
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 3 cut(s) 369, 779, 1042
Bme1390I CCNGG 2 cut(s) 27, 385
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 227, 824, 845
BmrFI CCNGG 2 cut(s) 27, 385
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 1113
BmtI GCTAGC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 991, 1103
BpmI CTGGAG 1 cut(s) 778
Bpu10I CCTNAGC 1 cut(s) 1140
Bpu1102I GCTNAGC 1 cut(s) 781
BpuEI CTTGAG 3 cut(s) 205, 485, 684
BpuMI CCSGG 2 cut(s) 27, 385
BsaAI YACGTR 2 cut(s) 450, 563
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 2 cut(s) 226, 817
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 766
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 528, 801, 853, 881
Bse118I RCCGGY 2 cut(s) 299, 370
Bse1I ACTGG 3 cut(s) 344, 795, 966
Bse3DI GCAATG 1 cut(s) 1035
Bse8I GATNNNNATC 1 cut(s) 827
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 2 cut(s) 828, 958
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 5 cut(s) 26, 528, 801, 853, 881
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 3 cut(s) 366, 956, 1131
BseNI ACTGG 3 cut(s) 344, 795, 966
BseRI GAGGAG 2 cut(s) 87, 90
BseSI GKGCMC 2 cut(s) 562, 846
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 3 cut(s) 354, 764, 1027
BseYI CCCAGC 1 cut(s) 333
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 5 cut(s) 388, 521, 718, 805, 965
BshNI GGYRCC 2 cut(s) 225, 843
BsiEI CGRYCG 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 4 cut(s) 26, 300, 371, 385
BslFI GGGAC 2 cut(s) 221, 307
BslI CCNNNNNNNGG 5 cut(s) 26, 528, 801, 853, 881
BsmAI GTCTC 2 cut(s) 323, 458
BsmFI GGGAC 2 cut(s) 221, 307
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 5 cut(s) 388, 521, 718, 805, 965
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 562, 846
Bsp143I GATC 2 cut(s) 822, 895
Bsp1720I GCTNAGC 1 cut(s) 781
BspACI CCGC 7 cut(s) 56, 185, 197, 204, 678, 752, 935
BspANI GGCC 5 cut(s) 388, 521, 718, 805, 965
BspCNI CTCAG 3 cut(s) 367, 955, 1132
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 227, 824, 845
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 3 cut(s) 817, 830, 890
BspT107I GGYRCC 2 cut(s) 225, 843
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 1035
BsrFI RCCGGY 2 cut(s) 299, 370
BsrI ACTGG 3 cut(s) 344, 795, 966
BssAI RCCGGY 2 cut(s) 299, 370
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 2 cut(s) 822, 895
BssNI GRCGYC 2 cut(s) 226, 817
BssT1I CCWWGG 1 cut(s) 766
Bst4CI ACNGT 4 cut(s) 67, 235, 580, 730
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 2 cut(s) 226, 817
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstBAI YACGTR 2 cut(s) 450, 563
BstC8I GCNNGC 6 cut(s) 301, 372, 680, 744, 933, 1033
BstDEI CTNAG 4 cut(s) 375, 781, 942, 1140
BstF5I GGATG 2 cut(s) 828, 958
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 2 cut(s) 229, 306
BstHHI GCGC 4 cut(s) 218, 228, 288, 305
BstKTI GATC 2 cut(s) 825, 898
BstMAI GTCTC 2 cut(s) 323, 458
BstMBI GATC 2 cut(s) 822, 895
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 3 cut(s) 665, 1037, 1046
BstPAI GACNNNNGTC 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 25, 383
BstSLI GKGCMC 2 cut(s) 562, 846
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 354, 764, 1027
BstV2I GAAGAC 2 cut(s) 991, 1103
BstX2I RGATCY 2 cut(s) 822, 895
BstXI CCANNNNNNTGG 2 cut(s) 85, 630
BstYI RGATCY 2 cut(s) 822, 895
BstZI CGGCCG 1 cut(s) 386
BsuRI GGCC 5 cut(s) 388, 521, 718, 805, 965
BtsCI GGATG 2 cut(s) 828, 958
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 915, 973
Cac8I GCNNGC 6 cut(s) 301, 372, 680, 744, 933, 1033
CaiI CAGNNNCTG 1 cut(s) 1014
CfoI GCGC 4 cut(s) 218, 228, 288, 305
Cfr10I RCCGGY 2 cut(s) 299, 370
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 268, 1012
CviAII CATG 3 cut(s) 85, 833, 1018
CviQI GTAC 2 cut(s) 268, 1012
DdeI CTNAG 4 cut(s) 375, 781, 942, 1140
DinI GGCGCC 1 cut(s) 227
DpnI GATC 2 cut(s) 824, 897
DpnII GATC 2 cut(s) 822, 895
EaeI YGGCCR 3 cut(s) 386, 519, 963
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 766
Eco147I AGGCCT 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 1 cut(s) 386
Eco57I CTGAAG 3 cut(s) 228, 999, 1065
Eco72I CACGTG 2 cut(s) 450, 563
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 2 cut(s) 589, 921
EcoT14I CCWWGG 1 cut(s) 766
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 3 cut(s) 88, 836, 1021
FaiI YATR 6 cut(s) 86, 470, 492, 834, 1019, 1059
FalI AAGNNNNNCTT 2 cut(s) 972, 1004
FaqI GGGAC 2 cut(s) 221, 307
FatI CATG 3 cut(s) 84, 832, 1017
FauI CCCGC 3 cut(s) 192, 671, 928
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 3 cut(s) 368, 778, 1041
FokI GGATG 2 cut(s) 815, 965
Fsp4HI GCNGC 3 cut(s) 368, 778, 1041
FspBI CTAG 2 cut(s) 296, 743
GlaI GCGC 4 cut(s) 217, 227, 287, 304
GluI GCNGC 3 cut(s) 368, 778, 1041
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 778
HaeII RGCGCY 2 cut(s) 229, 306
HaeIII GGCC 5 cut(s) 388, 521, 718, 805, 965
HapII CCGG 4 cut(s) 26, 300, 371, 385
HhaI GCGC 4 cut(s) 218, 228, 288, 305
Hin1I GRCGYC 2 cut(s) 226, 817
Hin1II CATG 3 cut(s) 88, 836, 1021
Hin6I GCGC 4 cut(s) 216, 226, 286, 303
HinP1I GCGC 4 cut(s) 216, 226, 286, 303
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 377, 391, 755
HpaII CCGG 4 cut(s) 26, 300, 371, 385
HphI GGTGA 2 cut(s) 183, 898
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 2 cut(s) 254, 822
Hpy188III TCNNGA 4 cut(s) 328, 395, 502, 642
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 2 cut(s) 256, 974
HpyCH4III ACNGT 4 cut(s) 67, 235, 580, 730
HpyCH4IV ACGT 3 cut(s) 449, 562, 817
HpyCH4V TGCA 6 cut(s) 319, 908, 913, 1017, 1031, 1120
HpyF10VI GCNNNNNNNGC 3 cut(s) 665, 1037, 1046
HpyF3I CTNAG 4 cut(s) 375, 781, 942, 1140
HpySE526I ACGT 3 cut(s) 449, 562, 817
Hsp92I GRCGYC 2 cut(s) 226, 817
Hsp92II CATG 3 cut(s) 88, 836, 1021
HspAI GCGC 4 cut(s) 216, 226, 286, 303
KasI GGCGCC 1 cut(s) 225
KroI GCCGGC 2 cut(s) 299, 370
KroNI GCCGGC 2 cut(s) 301, 372
Kzo9I GATC 2 cut(s) 822, 895
LmnI GCTCC 2 cut(s) 100, 625
Lsp1109I GCAGC 3 cut(s) 354, 764, 1027
LweI GCATC 1 cut(s) 1113
MaeI CTAG 2 cut(s) 296, 743
MaeII ACGT 3 cut(s) 449, 562, 817
MaeIII GTNAC 3 cut(s) 71, 568, 968
MalI GATC 2 cut(s) 824, 897
MboI GATC 2 cut(s) 822, 895
MboII GAAGA 8 cut(s) 203, 284, 598, 683, 754, 996, 1103, 1106
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 2 cut(s) 822, 895
MhlI GDGCHC 2 cut(s) 562, 846
MlsI TGGCCA 2 cut(s) 521, 965
MluCI AATT 8 cut(s) 156, 523, 589, 614, 876, 900, 921, 1090
MluNI TGGCCA 2 cut(s) 521, 965
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 3 cut(s) 386, 400, 749
MmeI TCCRAC 2 cut(s) 86, 800
Mox20I TGGCCA 2 cut(s) 521, 965
MroNI GCCGGC 2 cut(s) 299, 370
MscI TGGCCA 2 cut(s) 521, 965
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 2 cut(s) 521, 965
MspI CCGG 4 cut(s) 26, 300, 371, 385
MspR9I CCNGG 2 cut(s) 27, 385
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 665, 1037, 1046
NaeI GCCGGC 2 cut(s) 301, 372
NarI GGCGCC 1 cut(s) 226
NciI CCSGG 2 cut(s) 27, 385
NdeII GATC 2 cut(s) 822, 895
NgoMIV GCCGGC 2 cut(s) 299, 370
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 3 cut(s) 88, 836, 1021
NlaIV GGNNCC 3 cut(s) 227, 824, 845
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 71, 968
PaeR7I CTCGAG 1 cut(s) 326
PceI AGGCCT 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PctI GAATGC 1 cut(s) 187
PdiI GCCGGC 2 cut(s) 301, 372
PflMI CCANNNNNTGG 2 cut(s) 801, 881
PkrI GCNGC 3 cut(s) 369, 779, 1042
PleI GAGTC 3 cut(s) 385, 399, 749
PluTI GGCGCC 1 cut(s) 229
PmaCI CACGTG 2 cut(s) 450, 563
PmlI CACGTG 2 cut(s) 450, 563
PpsI GAGTC 3 cut(s) 385, 399, 749
Ppu21I YACGTR 2 cut(s) 450, 563
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 292
PspCI CACGTG 2 cut(s) 450, 563
PspFI CCCAGC 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 227, 824, 845
PspPI GGNCC 1 cut(s) 292
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 1014
PsuI RGATCY 2 cut(s) 822, 895
RsaI GTAC 2 cut(s) 269, 1013
RsaNI GTAC 2 cut(s) 268, 1012
RseI CAYNNNNRTG 1 cut(s) 548
SalI GTCGAC 1 cut(s) 379
SatI GCNGC 3 cut(s) 368, 778, 1041
Sau3AI GATC 2 cut(s) 822, 895
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 3 cut(s) 386, 400, 749
ScrFI CCNGG 2 cut(s) 27, 385
SduI GDGCHC 2 cut(s) 562, 846
SfaNI GCATC 1 cut(s) 1113
SfoI GGCGCC 1 cut(s) 227
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 4 cut(s) 220, 326, 500, 699
SmoI CTYRAG 4 cut(s) 220, 326, 500, 699
Sse9I AATT 8 cut(s) 156, 523, 589, 614, 876, 900, 921, 1090
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 7 cut(s) 56, 185, 197, 204, 678, 752, 935
SspDI GGCGCC 1 cut(s) 225
SspMI CTAG 2 cut(s) 296, 743
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 25, 383
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 4 cut(s) 67, 235, 580, 730
TaiI ACGT 3 cut(s) 452, 565, 820
TaqI TCGA 2 cut(s) 327, 380
TasI AATT 8 cut(s) 156, 523, 589, 614, 876, 900, 921, 1090
TscAI CASTG 2 cut(s) 915, 973
TseFI GTSAC 2 cut(s) 71, 968
TseI GCWGC 3 cut(s) 367, 777, 1040
Tsp45I GTSAC 2 cut(s) 71, 968
TspDTI ATGAA 3 cut(s) 485, 849, 1101
TspRI CASTG 2 cut(s) 915, 973
Van91I CCANNNNNTGG 2 cut(s) 801, 881
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 5 cut(s) 156, 589, 614, 921, 1090
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 2 cut(s) 296, 743
ZraI GACGTC 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.