Rh5DG174200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
18689965 .. 18693965
4001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG174200.1

Sequence Viewer

Length: 1077 bp
ATGGCAAAATCCAACTTTCCTAAACCGGTAAAACTCCCAACGGGAATAAACCAACCGCTTCCAACGGTCTGTCACTCCAATCTCATGGCTTTTGCTCCTCCTCCAAACCCCAACCCAATCCCTCACTTCCTCTCTCCCACTCCATTCTCTCCCCAAATTTCCCTCCTTTTTCCCAAAACACCCCCGCATTCACCACCGCCCTCCGCCCCTCTTCGCGCCTCAAGGCGCCAAACCGTCCCAGCTTCAGCCCTCCGAGAATGGAAGGAGTACGAAGAAGCCGTGAAGCGCAAGGACCTAGCCGGCGCTCTTGGGTTCTTGCAGTCCCTCGAGACCCAGCAAAACCCAGTTGAGATTGTCAATGGGTCGCTGCCGGCTGAGTCGACCCGGCCGAGTCAAGAGTTGGGTTTCGTGGGGTGGGAGAGGGAGAGGGATTGGGAGGTCTTGGACACGTGTCTCAATGCTGACAACATGAAGCTGGTGGGCAAAGCTTATGGCTTTCTCAAGAACAGAGGGTTCTTGGCCAATTTTGGGAGATACAGGAACATTGTAATGGAGGGAACACGTGATGTTACACCAACTGTGTTGAAGACTTCAACAGGTTTAGAAGCATCGAAATTTGCTCCAAAAAAGTGGGGTCTTTCGGGAAGTTCTCGTCCTGCTCTGGTTGCTTTTCTTGGCGGGCTATCTTTTCTTCTTTCTCAAGGCATTGACATCAGGCCTAACCTTACGGTAATATTGGGGCTAGCATTTGCGGACTCTATCTTCCTTGGTGGTTGCTGCTTAGCTCAAATCTCCAGTTATTGGCCTCCAAATAGACGCCGGATCCTCATCCATGAAGCAGGGCACCTCCTAACGGCTTATCTAATGGGTTGCCCAATTCGTGGGGTGATATTAGATCCAATTGTTGCAGTGCAGATGGGAATTCAAGGGCAGGTAATTTCTGGTCTTCTGTGTGCTTCAGTGGCATTTCACTCGGTTTTGATCGTTGTTCACTCAACAATTCAATCACCATGGGTTCAAGCAATAACCAACTTAGCAATAACGAGATATGTGTATAACTTTTACCTGCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.16

Weight (kDa)

9.51

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 225, 843
AccB7I CCANNNNNTGG 2 cut(s) 801, 881
AccI GTMKAC 1 cut(s) 380
AccII CGCG 1 cut(s) 216
AciI CCGC 6 cut(s) 56, 185, 197, 204, 678, 752
AclWI GGATC 3 cut(s) 817, 830, 890
AcoI YGGCCR 2 cut(s) 386, 519
AcsI RAATTY 3 cut(s) 156, 614, 921
AcuI CTGAAG 2 cut(s) 228, 942
AcvI CACGTG 2 cut(s) 450, 563
AcyI GRCGYC 2 cut(s) 226, 817
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
AflIII ACRYGT 3 cut(s) 447, 449, 560
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 5 cut(s) 586, 594, 926, 1004, 1019
AluBI AGCT 4 cut(s) 242, 475, 488, 785
AluI AGCT 4 cut(s) 242, 475, 488, 785
Alw26I GTCTC 2 cut(s) 323, 458
AlwI GGATC 3 cut(s) 817, 830, 890
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 4 cut(s) 386, 519, 716, 803
ApeKI GCWGC 2 cut(s) 367, 777
ApoI RAATTY 3 cut(s) 156, 614, 921
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 4 cut(s) 218, 228, 288, 305
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 183, 898, 999
AsuNHI GCTAGC 1 cut(s) 742
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 1 cut(s) 521
BamHI GGATCC 1 cut(s) 822
BanI GGYRCC 2 cut(s) 225, 843
BbrPI CACGTG 2 cut(s) 450, 563
BbsI GAAGAC 2 cut(s) 593, 938
BbvI GCAGC 2 cut(s) 354, 764
BccI CCATC 1 cut(s) 910
BceAI ACGGC 2 cut(s) 263, 870
BcgI CGANNNNNNTGC 2 cut(s) 954, 988
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 323, 458
BfaI CTAG 2 cut(s) 296, 743
BfoI RGCGCY 2 cut(s) 229, 306
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 2 cut(s) 368, 778
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 2 cut(s) 369, 779
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 227, 824, 845
BmrFI CCNGG 1 cut(s) 385
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 617
BmtI GCTAGC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 593, 938
BpmI CTGGAG 1 cut(s) 778
Bpu1102I GCTNAGC 1 cut(s) 781
BpuEI CTTGAG 3 cut(s) 205, 485, 684
BpuMI CCSGG 1 cut(s) 385
BsaAI YACGTR 2 cut(s) 450, 563
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 2 cut(s) 226, 817
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 766, 1010
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
Bse118I RCCGGY 3 cut(s) 25, 299, 370
Bse1I ACTGG 2 cut(s) 344, 795
Bse8I GATNNNNATC 1 cut(s) 827
BseDI CCNNGG 2 cut(s) 766, 1010
BseGI GGATG 1 cut(s) 828
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 344, 795
BseRI GAGGAG 2 cut(s) 87, 90
BseSI GKGCMC 1 cut(s) 846
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 354, 764
BseYI CCCAGC 2 cut(s) 238, 333
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 4 cut(s) 388, 521, 718, 805
BshNI GGYRCC 2 cut(s) 225, 843
BshTI ACCGGT 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 5 cut(s) 26, 300, 371, 385, 820
BslFI GGGAC 2 cut(s) 221, 307
BslI CCNNNNNNNGG 4 cut(s) 528, 801, 853, 881
BsmAI GTCTC 2 cut(s) 323, 458
BsmFI GGGAC 2 cut(s) 221, 307
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 4 cut(s) 388, 521, 718, 805
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 3 cut(s) 822, 895, 981
Bsp1720I GCTNAGC 1 cut(s) 781
Bsp19I CCATGG 1 cut(s) 1010
BspACI CCGC 6 cut(s) 56, 185, 197, 204, 678, 752
BspANI GGCC 4 cut(s) 388, 521, 718, 805
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 227, 824, 845
BspMI ACCTGC 1 cut(s) 922
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 3 cut(s) 817, 830, 890
BspT107I GGYRCC 2 cut(s) 225, 843
BspTNI GGTCTC 1 cut(s) 323
BsrFI RCCGGY 3 cut(s) 25, 299, 370
BsrI ACTGG 2 cut(s) 344, 795
BssAI RCCGGY 3 cut(s) 25, 299, 370
BssECI CCNNGG 2 cut(s) 766, 1010
BssMI GATC 3 cut(s) 822, 895, 981
BssNI GRCGYC 2 cut(s) 226, 817
BssT1I CCWWGG 2 cut(s) 766, 1010
Bst4CI ACNGT 4 cut(s) 67, 235, 580, 730
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 2 cut(s) 226, 817
BstBAI YACGTR 2 cut(s) 450, 563
BstC8I GCNNGC 4 cut(s) 301, 372, 680, 744
BstDEI CTNAG 3 cut(s) 375, 781, 1033
BstDSI CCRYGG 1 cut(s) 1010
BstF5I GGATG 1 cut(s) 828
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 2 cut(s) 229, 306
BstHHI GCGC 4 cut(s) 218, 228, 288, 305
BstKTI GATC 3 cut(s) 825, 898, 984
BstMAI GTCTC 2 cut(s) 323, 458
BstMBI GATC 3 cut(s) 822, 895, 981
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 665, 962
BstPAI GACNNNNGTC 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 354, 764
BstV2I GAAGAC 2 cut(s) 593, 938
BstX2I RGATCY 2 cut(s) 822, 895
BstXI CCANNNNNNTGG 2 cut(s) 85, 630
BstYI RGATCY 2 cut(s) 822, 895
BstZI CGGCCG 1 cut(s) 386
BsuRI GGCC 4 cut(s) 388, 521, 718, 805
BtgI CCRYGG 1 cut(s) 1010
BtsCI GGATG 1 cut(s) 828
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 915, 966
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 4 cut(s) 301, 372, 680, 744
CfoI GCGC 4 cut(s) 218, 228, 288, 305
Cfr10I RCCGGY 3 cut(s) 25, 299, 370
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 5 cut(s) 85, 469, 833, 1011, 1074
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 3 cut(s) 375, 781, 1033
DinI GGCGCC 1 cut(s) 227
DpnI GATC 3 cut(s) 824, 897, 983
DpnII GATC 3 cut(s) 822, 895, 981
EaeI YGGCCR 2 cut(s) 386, 519
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 766, 1010
Eco147I AGGCCT 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 228, 942
Eco72I CACGTG 2 cut(s) 450, 563
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 921
EcoT14I CCWWGG 2 cut(s) 766, 1010
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 2 cut(s) 766, 1010
FaeI CATG 5 cut(s) 88, 472, 836, 1014, 1077
FaiI YATR 8 cut(s) 86, 470, 492, 834, 1012, 1050, 1056, 1075
FaqI GGGAC 2 cut(s) 221, 307
FatI CATG 5 cut(s) 84, 468, 832, 1010, 1073
FauI CCCGC 2 cut(s) 192, 671
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 368, 778
FokI GGATG 1 cut(s) 815
Fsp4HI GCNGC 2 cut(s) 368, 778
FspBI CTAG 2 cut(s) 296, 743
GlaI GCGC 4 cut(s) 217, 227, 287, 304
GluI GCNGC 2 cut(s) 368, 778
GsaI CCCAGC 2 cut(s) 242, 337
GsuI CTGGAG 1 cut(s) 778
HaeII RGCGCY 2 cut(s) 229, 306
HaeIII GGCC 4 cut(s) 388, 521, 718, 805
HapII CCGG 5 cut(s) 26, 300, 371, 385, 820
HgaI GACGC 1 cut(s) 825
HhaI GCGC 4 cut(s) 218, 228, 288, 305
Hin1I GRCGYC 2 cut(s) 226, 817
Hin1II CATG 5 cut(s) 88, 472, 836, 1014, 1077
Hin6I GCGC 4 cut(s) 216, 226, 286, 303
HinP1I GCGC 4 cut(s) 216, 226, 286, 303
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 377, 391, 755
HpaII CCGG 5 cut(s) 26, 300, 371, 385, 820
HphI GGTGA 3 cut(s) 183, 898, 999
Hpy166II GTNNAC 2 cut(s) 381, 991
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 4 cut(s) 328, 395, 502, 642
Hpy8I GTNNAC 2 cut(s) 381, 991
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 4 cut(s) 67, 235, 580, 730
HpyCH4IV ACGT 2 cut(s) 449, 562
HpyCH4V TGCA 3 cut(s) 319, 908, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 962
HpyF3I CTNAG 3 cut(s) 375, 781, 1033
HpySE526I ACGT 2 cut(s) 449, 562
Hsp92I GRCGYC 2 cut(s) 226, 817
Hsp92II CATG 5 cut(s) 88, 472, 836, 1014, 1077
HspAI GCGC 4 cut(s) 216, 226, 286, 303
KasI GGCGCC 1 cut(s) 225
KroI GCCGGC 2 cut(s) 299, 370
KroNI GCCGGC 2 cut(s) 301, 372
Kzo9I GATC 3 cut(s) 822, 895, 981
LmnI GCTCC 2 cut(s) 100, 625
Lsp1109I GCAGC 2 cut(s) 354, 764
LweI GCATC 1 cut(s) 617
MaeI CTAG 2 cut(s) 296, 743
MaeII ACGT 2 cut(s) 449, 562
MaeIII GTNAC 2 cut(s) 71, 568
MalI GATC 3 cut(s) 824, 897, 983
MboI GATC 3 cut(s) 822, 895, 981
MboII GAAGA 6 cut(s) 203, 284, 598, 683, 754, 938
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 2 cut(s) 822, 895
MhlI GDGCHC 1 cut(s) 846
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 8 cut(s) 156, 523, 614, 876, 900, 921, 936, 999
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 3 cut(s) 386, 400, 749
MmeI TCCRAC 2 cut(s) 36, 86
Mox20I TGGCCA 1 cut(s) 521
MroNI GCCGGC 2 cut(s) 299, 370
MscI TGGCCA 1 cut(s) 521
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 521
MspI CCGG 5 cut(s) 26, 300, 371, 385, 820
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 665, 962
NaeI GCCGGC 2 cut(s) 301, 372
NarI GGCGCC 1 cut(s) 226
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 1010
NdeII GATC 3 cut(s) 822, 895, 981
NgoMIV GCCGGC 2 cut(s) 299, 370
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 5 cut(s) 88, 472, 836, 1014, 1077
NlaIV GGNNCC 3 cut(s) 227, 824, 845
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 326
PceI AGGCCT 1 cut(s) 718
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 386
PctI GAATGC 1 cut(s) 187
PdiI GCCGGC 2 cut(s) 301, 372
PflMI CCANNNNNTGG 2 cut(s) 801, 881
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 2 cut(s) 369, 779
PleI GAGTC 3 cut(s) 385, 399, 749
PluTI GGCGCC 1 cut(s) 229
PmaCI CACGTG 2 cut(s) 450, 563
PmlI CACGTG 2 cut(s) 450, 563
PpsI GAGTC 3 cut(s) 385, 399, 749
Ppu21I YACGTR 2 cut(s) 450, 563
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 292
PspCI CACGTG 2 cut(s) 450, 563
PspFI CCCAGC 2 cut(s) 238, 333
PspN4I GGNNCC 3 cut(s) 227, 824, 845
PspPI GGNCC 1 cut(s) 292
PspPPI RGGWCCY 1 cut(s) 292
PsuI RGATCY 2 cut(s) 822, 895
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 548
SalI GTCGAC 1 cut(s) 379
SatI GCNGC 2 cut(s) 368, 778
Sau3AI GATC 3 cut(s) 822, 895, 981
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 3 cut(s) 386, 400, 749
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 1 cut(s) 617
SfoI GGCGCC 1 cut(s) 227
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 4 cut(s) 220, 326, 500, 699
SmoI CTYRAG 4 cut(s) 220, 326, 500, 699
Sse9I AATT 8 cut(s) 156, 523, 614, 876, 900, 921, 936, 999
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 6 cut(s) 56, 185, 197, 204, 678, 752
SspDI GGCGCC 1 cut(s) 225
SspI AATATT 1 cut(s) 735
SspMI CTAG 2 cut(s) 296, 743
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 2 cut(s) 766, 1010
TaaI ACNGT 4 cut(s) 67, 235, 580, 730
TaiI ACGT 2 cut(s) 452, 565
TaqI TCGA 3 cut(s) 327, 380, 611
TasI AATT 8 cut(s) 156, 523, 614, 876, 900, 921, 936, 999
TscAI CASTG 2 cut(s) 915, 966
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 367, 777
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 485, 849
TspRI CASTG 2 cut(s) 915, 966
Van91I CCANNNNNTGG 2 cut(s) 801, 881
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 3 cut(s) 156, 614, 921
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 2 cut(s) 296, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.