Rh5AG175400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
19402805 .. 19406428
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG175400.1

Sequence Viewer

Length: 993 bp
ATGGCTTTTGCTCCTCCTCCAAACCCCAAACCAATCCCTCACTTCCTCTCTCCCACTCCATTCTCTCCCCAAATTTCCCTCCTTTTTCCCAAAACACCCCCGCATTCACCACCGCCCTCAGCCCCTCTTCGCGCCTCAAGGCGCCAAACCGTCCCAACTTCAGCCCTCCGAGAATGGAAGGAGTACGAAGAAGCTGTGAAGCGCAAGGACCTAGCCGGCGCTCTTGGGTTCCTGCAGTCCCTCGAGACCCAGCAAAACCCAGTTGAGATTGTTAATGGGTCGTTGCCGGCTGAGTCGACCCGGGCGAGTCAAGAGTTGGGTTTTGGGGGGTGGGAGAGGGAGAGGGATTGGGAGGTCTTGGACACGTGTCTCAATGCTGATAACATGAAGCTTGTGGGCAAAGCTTATGGCTTTCTCAAGAACAGAGGGTTCTTGGCCAATTTTGGGAGATACAGGAACATTGTAATGGAGGGAACACGTGATGTTACACCAACTGTGTTGAAGACTTCAACAGGTTTAGAAGCATCGAAATTTGCTCCAAAAAAGTGGGGTCTTTCGGGAAGTTCTCGTCCTGCTCTGGTTGCTTTTCTTGGTGGGCTATCTTTTCTTCTTTCTCAAGGCATTGACATCAGGCCTAACCTTACGGTAATTTTGGGGCTAGCATTTGCGGACTCTATCTTCCTTGGTGGTTGCTGCTTAGCTCAAATCTCCAGTTATTGGCCTCCAAATAGACGCCGGATCCTCATCCATGAAGCAGGGCACCTCCTAACGGCTTATCTAATGGGTTGCCCAATTCGTGGGGTGATATTAGATCCAATTGTTGCAGTGCAGATGGGAATTCAAGGGCAGGTAATTTCTGGTCTTCTGTGTGCTTCAGTGGCATTTCACTCGGTTTTGATCGTTGTTCACTCAACAATTCAATCACCATGGGTTCACGCAATAACCAACTTAGCAATAACGAGATATGTGCATAACTTTTACCTGCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

36.1

Weight (kDa)

9.46

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccB1I GGYRCC 2 cut(s) 141, 759
AccB7I CCANNNNNTGG 2 cut(s) 717, 797
AccI GTMKAC 1 cut(s) 296
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 101, 113, 668
AclWI GGATC 3 cut(s) 733, 746, 806
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 3 cut(s) 72, 530, 837
AcuI CTGAAG 2 cut(s) 144, 858
AcvI CACGTG 2 cut(s) 366, 479
AcyI GRCGYC 2 cut(s) 142, 733
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 444, 717, 769, 797
AflIII ACRYGT 3 cut(s) 363, 365, 476
AgsI TTSAA 4 cut(s) 502, 510, 842, 920
AluBI AGCT 4 cut(s) 194, 391, 404, 701
AluI AGCT 4 cut(s) 194, 391, 404, 701
Alw26I GTCTC 2 cut(s) 239, 374
AlwI GGATC 3 cut(s) 733, 746, 806
Ama87I CYCGRG 2 cut(s) 242, 300
AoxI GGCC 3 cut(s) 435, 632, 719
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 3 cut(s) 72, 530, 837
AspLEI GCGC 4 cut(s) 134, 144, 204, 221
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 2 cut(s) 301, 302
AsuHPI GGTGA 3 cut(s) 99, 814, 915
AsuNHI GCTAGC 1 cut(s) 658
AvaI CYCGRG 2 cut(s) 242, 300
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 762
BalI TGGCCA 1 cut(s) 437
BamHI GGATCC 1 cut(s) 738
BanI GGYRCC 2 cut(s) 141, 759
BbrPI CACGTG 2 cut(s) 366, 479
BbsI GAAGAC 2 cut(s) 509, 854
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 680
BccI CCATC 1 cut(s) 826
BceAI ACGGC 1 cut(s) 786
BcgI CGANNNNNNTGC 4 cut(s) 870, 904, 949, 983
BcnI CCSGG 2 cut(s) 301, 302
BcoDI GTCTC 2 cut(s) 239, 374
BfaI CTAG 2 cut(s) 212, 659
BfmI CTRYAG 1 cut(s) 233
BfoI RGCGCY 2 cut(s) 145, 222
BfuAI ACCTGC 1 cut(s) 838
BisI GCNGC 1 cut(s) 694
BlpI GCTNAGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 695
Bme1390I CCNGG 2 cut(s) 301, 302
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 2 cut(s) 242, 300
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 4 cut(s) 143, 230, 740, 761
BmrFI CCNGG 2 cut(s) 301, 302
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 533
BmtI GCTAGC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 254
BoxI GACNNNNGTC 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 509, 854
BpmI CTGGAG 1 cut(s) 694
Bpu10I CCTNAGC 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 697
BpuEI CTTGAG 3 cut(s) 121, 401, 600
BpuMI CCSGG 2 cut(s) 301, 302
BsaAI YACGTR 2 cut(s) 366, 479
BsaBI GATNNNNATC 1 cut(s) 743
BsaHI GRCGYC 2 cut(s) 142, 733
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 300, 682, 926
Bsc4I CCNNNNNNNGG 4 cut(s) 444, 717, 769, 797
Bse118I RCCGGY 2 cut(s) 215, 286
Bse1I ACTGG 2 cut(s) 260, 711
Bse8I GATNNNNATC 1 cut(s) 743
BseDI CCNNGG 3 cut(s) 300, 682, 926
BseGI GGATG 1 cut(s) 744
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 4 cut(s) 444, 717, 769, 797
BseMII CTCAG 2 cut(s) 132, 282
BseNI ACTGG 2 cut(s) 260, 711
BseRI GAGGAG 1 cut(s) 6
BseSI GKGCMC 1 cut(s) 762
BseXI GCAGC 1 cut(s) 680
BseYI CCCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 437, 634, 721
BshNI GGYRCC 2 cut(s) 141, 759
BsiHKCI CYCGRG 2 cut(s) 242, 300
BsiSI CCGG 4 cut(s) 216, 287, 301, 736
BslFI GGGAC 2 cut(s) 137, 223
BslI CCNNNNNNNGG 4 cut(s) 444, 717, 769, 797
BsmAI GTCTC 2 cut(s) 239, 374
BsmFI GGGAC 2 cut(s) 137, 223
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 3 cut(s) 437, 634, 721
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 2 cut(s) 242, 300
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 3 cut(s) 738, 811, 897
Bsp1720I GCTNAGC 1 cut(s) 697
Bsp19I CCATGG 1 cut(s) 926
BspACI CCGC 3 cut(s) 101, 113, 668
BspANI GGCC 3 cut(s) 437, 634, 721
BspCNI CTCAG 2 cut(s) 131, 283
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 143, 230, 740, 761
BspMAI CTGCAG 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 3 cut(s) 733, 746, 806
BspT107I GGYRCC 2 cut(s) 141, 759
BspTNI GGTCTC 1 cut(s) 239
BsrFI RCCGGY 2 cut(s) 215, 286
BsrI ACTGG 2 cut(s) 260, 711
BssAI RCCGGY 2 cut(s) 215, 286
BssECI CCNNGG 3 cut(s) 300, 682, 926
BssMI GATC 3 cut(s) 738, 811, 897
BssNI GRCGYC 2 cut(s) 142, 733
BssT1I CCWWGG 2 cut(s) 682, 926
Bst4CI ACNGT 3 cut(s) 151, 496, 646
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 2 cut(s) 142, 733
BstBAI YACGTR 2 cut(s) 366, 479
BstC8I GCNNGC 3 cut(s) 217, 288, 660
BstDEI CTNAG 4 cut(s) 118, 291, 697, 949
BstDSI CCRYGG 1 cut(s) 926
BstF5I GGATG 1 cut(s) 744
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 2 cut(s) 145, 222
BstHHI GCGC 4 cut(s) 134, 144, 204, 221
BstKTI GATC 3 cut(s) 741, 814, 900
BstMAI GTCTC 2 cut(s) 239, 374
BstMBI GATC 3 cut(s) 738, 811, 897
BstMWI GCNNNNNNNGC 2 cut(s) 581, 878
BstPAI GACNNNNGTC 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 299, 300
BstSFI CTRYAG 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 762
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 2 cut(s) 509, 854
BstX2I RGATCY 2 cut(s) 738, 811
BstXI CCANNNNNNTGG 1 cut(s) 546
BstYI RGATCY 2 cut(s) 738, 811
BsuRI GGCC 3 cut(s) 437, 634, 721
BtgI CCRYGG 1 cut(s) 926
BtsCI GGATG 1 cut(s) 744
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 2 cut(s) 831, 882
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 3 cut(s) 217, 288, 660
CfoI GCGC 4 cut(s) 134, 144, 204, 221
Cfr10I RCCGGY 2 cut(s) 215, 286
Cfr13I GGNCC 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 300
CseI GACGC 1 cut(s) 741
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 385, 749, 927, 990
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 4 cut(s) 118, 291, 697, 949
DinI GGCGCC 1 cut(s) 143
DpnI GATC 3 cut(s) 740, 813, 899
DpnII GATC 3 cut(s) 738, 811, 897
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 682, 926
Eco147I AGGCCT 1 cut(s) 634
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 144, 858
Eco72I CACGTG 2 cut(s) 366, 479
Eco88I CYCGRG 2 cut(s) 242, 300
EcoO109I RGGNCCY 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 837
EcoT14I CCWWGG 2 cut(s) 682, 926
EgeI GGCGCC 1 cut(s) 143
EheI GGCGCC 1 cut(s) 143
ErhI CCWWGG 2 cut(s) 682, 926
FaeI CATG 4 cut(s) 388, 752, 930, 993
FaiI YATR 7 cut(s) 386, 408, 750, 928, 966, 972, 991
FaqI GGGAC 2 cut(s) 137, 223
FatI CATG 4 cut(s) 384, 748, 926, 989
FauI CCCGC 1 cut(s) 108
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 694
FokI GGATG 1 cut(s) 731
Fsp4HI GCNGC 1 cut(s) 694
FspBI CTAG 2 cut(s) 212, 659
GlaI GCGC 4 cut(s) 133, 143, 203, 220
GluI GCNGC 1 cut(s) 694
GsaI CCCAGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 694
HaeII RGCGCY 2 cut(s) 145, 222
HaeIII GGCC 3 cut(s) 437, 634, 721
HapII CCGG 4 cut(s) 216, 287, 301, 736
HgaI GACGC 1 cut(s) 741
HhaI GCGC 4 cut(s) 134, 144, 204, 221
Hin1I GRCGYC 2 cut(s) 142, 733
Hin1II CATG 4 cut(s) 388, 752, 930, 993
Hin6I GCGC 4 cut(s) 132, 142, 202, 219
HinP1I GCGC 4 cut(s) 132, 142, 202, 219
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 2 cut(s) 389, 402
HinfI GANTC 3 cut(s) 293, 307, 671
HpaII CCGG 4 cut(s) 216, 287, 301, 736
HphI GGTGA 3 cut(s) 99, 814, 915
Hpy166II GTNNAC 3 cut(s) 297, 907, 934
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 4 cut(s) 244, 311, 418, 558
Hpy8I GTNNAC 3 cut(s) 297, 907, 934
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 3 cut(s) 151, 496, 646
HpyCH4IV ACGT 2 cut(s) 365, 478
HpyCH4V TGCA 4 cut(s) 235, 824, 829, 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 878
HpyF3I CTNAG 4 cut(s) 118, 291, 697, 949
HpySE526I ACGT 2 cut(s) 365, 478
Hsp92I GRCGYC 2 cut(s) 142, 733
Hsp92II CATG 4 cut(s) 388, 752, 930, 993
HspAI GCGC 4 cut(s) 132, 142, 202, 219
KasI GGCGCC 1 cut(s) 141
KroI GCCGGC 2 cut(s) 215, 286
KroNI GCCGGC 2 cut(s) 217, 288
Kzo9I GATC 3 cut(s) 738, 811, 897
LmnI GCTCC 2 cut(s) 16, 541
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 1 cut(s) 533
MaeI CTAG 2 cut(s) 212, 659
MaeII ACGT 2 cut(s) 365, 478
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 740, 813, 899
MboI GATC 3 cut(s) 738, 811, 897
MboII GAAGA 6 cut(s) 119, 200, 514, 599, 670, 854
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 2 cut(s) 738, 811
MhlI GDGCHC 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 9 cut(s) 72, 439, 530, 648, 792, 816, 837, 852, 915
MluNI TGGCCA 1 cut(s) 437
Mly113I GGCGCC 1 cut(s) 142
MlyI GAGTC 3 cut(s) 302, 316, 665
Mox20I TGGCCA 1 cut(s) 437
MroNI GCCGGC 2 cut(s) 215, 286
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 437
MspI CCGG 4 cut(s) 216, 287, 301, 736
MspR9I CCNGG 2 cut(s) 301, 302
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 103
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 581, 878
NaeI GCCGGC 2 cut(s) 217, 288
NarI GGCGCC 1 cut(s) 142
NciI CCSGG 2 cut(s) 301, 302
NcoI CCATGG 1 cut(s) 926
NdeII GATC 3 cut(s) 738, 811, 897
NgoMIV GCCGGC 2 cut(s) 215, 286
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 4 cut(s) 388, 752, 930, 993
NlaIV GGNNCC 4 cut(s) 143, 230, 740, 761
PaeR7I CTCGAG 1 cut(s) 242
PceI AGGCCT 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 1 cut(s) 103
PdiI GCCGGC 2 cut(s) 217, 288
PflMI CCANNNNNTGG 2 cut(s) 717, 797
PkrI GCNGC 1 cut(s) 695
PleI GAGTC 3 cut(s) 301, 315, 665
PluTI GGCGCC 1 cut(s) 145
PmaCI CACGTG 2 cut(s) 366, 479
PmlI CACGTG 2 cut(s) 366, 479
PpsI GAGTC 3 cut(s) 301, 315, 665
Ppu21I YACGTR 2 cut(s) 366, 479
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 208
PspCI CACGTG 2 cut(s) 366, 479
PspFI CCCAGC 1 cut(s) 249
PspN4I GGNNCC 4 cut(s) 143, 230, 740, 761
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
PstI CTGCAG 1 cut(s) 237
PsuI RGATCY 2 cut(s) 738, 811
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 464
SalI GTCGAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 694
Sau3AI GATC 3 cut(s) 738, 811, 897
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 302, 316, 665
ScrFI CCNGG 2 cut(s) 301, 302
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 1 cut(s) 533
SfcI CTRYAG 1 cut(s) 233
SfoI GGCGCC 1 cut(s) 143
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 242
SmaI CCCGGG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 4 cut(s) 136, 242, 416, 615
SmoI CTYRAG 4 cut(s) 136, 242, 416, 615
Sse9I AATT 9 cut(s) 72, 439, 530, 648, 792, 816, 837, 852, 915
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 3 cut(s) 101, 113, 668
SspDI GGCGCC 1 cut(s) 141
SspMI CTAG 2 cut(s) 212, 659
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 2 cut(s) 299, 300
StyI CCWWGG 2 cut(s) 682, 926
TaaI ACNGT 3 cut(s) 151, 496, 646
TaiI ACGT 2 cut(s) 368, 481
TaqI TCGA 3 cut(s) 243, 296, 527
TasI AATT 9 cut(s) 72, 439, 530, 648, 792, 816, 837, 852, 915
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 831, 882
TseI GCWGC 1 cut(s) 693
TspDTI ATGAA 2 cut(s) 401, 765
TspMI CCCGGG 1 cut(s) 300
TspRI CASTG 2 cut(s) 831, 882
Van91I CCANNNNNTGG 2 cut(s) 717, 797
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 3 cut(s) 72, 530, 837
XhoI CTCGAG 1 cut(s) 242
XmaI CCCGGG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 296
XspI CTAG 2 cut(s) 212, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.