AT1G56423

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012318
Physical Location & Seq
Forward (+)
21128912 .. 21130939
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56423.2

Sequence Viewer

Length: 813 bp
ATGGACTTCCGAAGTAGAAGGGTTCAATTTCTACTCTTTGCTATTGGATTAATCGCTCTTAGTATGACAGCTGAAAAATGTCGGGAACTTGTTGGACAAGAAGCTGCATCAAAGAGTGGACAGTTTACATTCTTGAATTGCTTTGATATGAGTTCAGGGACTTTAGCATGTGCAGTTAAAGAAGGTGTGAAGCTTTATTTCTACAATATAAGATCTATTCATGTAGAGAAGGCCAGGAACGTCGCTATTGAGAAAGCCTTGCACGAGGCATTGGATAATGGCATGCTTGCAAAAGAAGCAGCCAAAGAGGGGCAGAGAGCAGGTGAAAAAGCGGCTAAACTGGCGACGCGGCAAGCGAAACGTATCATAGGACCAATAGTAGCAGCTGGGTGGGATTTCTTTGAAGCGCTTTACTTTGGAGGGACTTTAACTGAAGGGTTCTTGCGTGGTACTGGAACTATGGTTGGTGCTTACTCAGGAGGGTACGTAGGTGAGCAGAGATTTGGTAGATTCGGTTATCTTGTGGGAAGTACCTTAGGGAATTGGGTTGGCGCACGGGTTGGACTTATGGTTTATGATGTTGTGAATGGGGTAAACTTCTTCTATGAGACTTATCAATCTGGAGAAATATATGAGGATCAGTCTACAAATGAAAGTCCCGAGGACCGGTCTACATATGAAAGTCGTGAGGACCCGTCTACATATGAAAGTCCTGAGGACAGGTCTACTTATGAAATTCGTGAGGACCAGTCTACATATGAAAGTCCTGAGGAGGATCAGTCTACATATGAAACTTCAAATTATGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.11

Weight (kDa)

4.83

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56423 AT1G56423
fragaria_vesca FvH4_6g07440
malus_domestica MD04G1193100.v1.1 MD12G1206000.v1.1
prunus_persica Prupe.6G313200_v2.0.a1
pyrus_communis pycom04g08470 pycom04g17090 pycom12g19390
rosa_chinensis RchiOBHm_Chr3g0457041
rosa_laevigata RLG00000025249
rosa_multiflora Rmu_sc0000488.1_g000003
rosa_roxburghii Rroxscaffold_6G00422240
rosa_rugosa Rorug03G0018700
rosa_samantha Rh3AG078500 Rh3BG080300 Rh3CG080300 Rh3DG082100
rosa_wichuraiana Rw3G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 311
AccI GTMKAC 6 cut(s) 644, 671, 698, 725, 752, 782
AccII CGCG 1 cut(s) 349
AciI CCGC 2 cut(s) 332, 349
AclWI GGATC 2 cut(s) 645, 783
AcsI RAATTY 1 cut(s) 735
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 3 cut(s) 451, 485, 532
AfeI AGCGCT 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 309, 666
AgeI ACCGGT 1 cut(s) 666
AgsI TTSAA 4 cut(s) 26, 136, 404, 798
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 5 cut(s) 71, 104, 193, 386, 808
AluI AGCT 5 cut(s) 71, 104, 193, 386, 808
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 2 cut(s) 645, 783
Ama87I CYCGRG 1 cut(s) 659
Aor51HI AGCGCT 1 cut(s) 408
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 3 cut(s) 104, 299, 383
ApoI RAATTY 1 cut(s) 735
AseI ATTAAT 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 666
AspLEI GCGC 2 cut(s) 409, 554
AspS9I GGNCC 4 cut(s) 371, 664, 691, 745
AsuHPI GGTGA 2 cut(s) 335, 503
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 4 cut(s) 371, 664, 691, 745
AxyI CCTNAGG 3 cut(s) 535, 714, 768
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanII GRGCYC 1 cut(s) 810
BauI CACGAG 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 3 cut(s) 91, 311, 395
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 1 cut(s) 811
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 311
BglII AGATCT 1 cut(s) 212
BisI GCNGC 5 cut(s) 105, 300, 333, 350, 384
BlsI GCNGC 5 cut(s) 106, 301, 334, 351, 385
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 4 cut(s) 371, 664, 691, 745
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 4 cut(s) 371, 664, 691, 745
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 666
BsaXI ACNNNNNCTCC 4 cut(s) 471, 501, 764, 794
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 666
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 3 cut(s) 345, 457, 748
Bse21I CCTNAGG 3 cut(s) 535, 714, 768
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 660
BseLI CCNNNNNNNGG 2 cut(s) 309, 666
BseMII CTCAG 3 cut(s) 489, 705, 759
BseNI ACTGG 3 cut(s) 345, 457, 748
BseRI GAGGAG 1 cut(s) 785
BseXI GCAGC 3 cut(s) 91, 311, 395
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 666
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 1 cut(s) 667
BslFI GGGAC 3 cut(s) 172, 436, 642
BslI CCNNNNNNNGG 2 cut(s) 309, 666
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 3 cut(s) 172, 436, 642
BsnI GGCC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 3 cut(s) 212, 637, 775
BspACI CCGC 2 cut(s) 332, 349
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 3 cut(s) 488, 706, 760
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 693
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 2 cut(s) 645, 783
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 3 cut(s) 345, 457, 748
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 3 cut(s) 212, 637, 775
BssSI CACGAG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 284, 288, 354
BstDEI CTNAG 5 cut(s) 59, 475, 535, 714, 768
BstFNI CGCG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 409, 554
BstKTI GATC 3 cut(s) 215, 640, 778
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 3 cut(s) 212, 637, 775
BstMWI GCNNNNNNNGC 2 cut(s) 296, 341
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 2 cut(s) 171, 286
BstSCI CCNGG 1 cut(s) 233
BstSNI TACGTA 1 cut(s) 487
BstUI CGCG 1 cut(s) 349
BstV1I GCAGC 3 cut(s) 91, 311, 395
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
Bsu36I CCTNAGG 3 cut(s) 535, 714, 768
BsuRI GGCC 1 cut(s) 233
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 3 cut(s) 284, 288, 354
CfoI GCGC 2 cut(s) 409, 554
Cfr10I RCCGGY 1 cut(s) 666
Cfr13I GGNCC 4 cut(s) 371, 664, 691, 745
CseI GACGC 1 cut(s) 355
Csp6I GTAC 3 cut(s) 450, 484, 531
CspAI ACCGGT 1 cut(s) 666
CviAII CATG 3 cut(s) 168, 221, 283
CviJI RGCY 9 cut(s) 71, 104, 193, 233, 257, 302, 335, 386, 808
CviKI_1 RGCY 9 cut(s) 71, 104, 193, 233, 257, 302, 335, 386, 808
CviQI GTAC 3 cut(s) 450, 484, 531
DdeI CTNAG 5 cut(s) 59, 475, 535, 714, 768
DpnI GATC 3 cut(s) 214, 639, 777
DpnII GATC 3 cut(s) 212, 637, 775
Ecl136II GAGCTC 1 cut(s) 808
Eco105I TACGTA 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 810
Eco47I GGWCC 4 cut(s) 371, 664, 691, 745
Eco47III AGCGCT 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 453
Eco81I CCTNAGG 3 cut(s) 535, 714, 768
Eco88I CYCGRG 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 810
FaeI CATG 3 cut(s) 171, 224, 286
FaqI GGGAC 3 cut(s) 172, 436, 642
FatI CATG 3 cut(s) 167, 220, 282
FauNDI CATATG 4 cut(s) 676, 703, 757, 787
FblI GTMKAC 6 cut(s) 644, 671, 698, 725, 752, 782
Fnu4HI GCNGC 5 cut(s) 105, 300, 333, 350, 384
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 5 cut(s) 105, 300, 333, 350, 384
FspBI CTAG 1 cut(s) 811
GlaI GCGC 2 cut(s) 408, 553
GluI GCNGC 5 cut(s) 105, 300, 333, 350, 384
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 667
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 409, 554
Hin1II CATG 3 cut(s) 171, 224, 286
Hin6I GCGC 2 cut(s) 407, 552
HinP1I GCGC 2 cut(s) 407, 552
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 510
HpaII CCGG 1 cut(s) 667
HphI GGTGA 2 cut(s) 335, 503
Hpy166II GTNNAC 9 cut(s) 119, 126, 595, 645, 672, 699, 726, 753, 783
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 9 cut(s) 83, 133, 477, 621, 659, 686, 713, 740, 767
Hpy8I GTNNAC 9 cut(s) 119, 126, 595, 645, 672, 699, 726, 753, 783
Hpy99I CGWCG 2 cut(s) 245, 349
HpyAV CCTTC 4 cut(s) 12, 176, 223, 428
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 3 cut(s) 240, 361, 486
HpyCH4V TGCA 4 cut(s) 107, 173, 262, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 341
HpyF3I CTNAG 5 cut(s) 59, 475, 535, 714, 768
HpySE526I ACGT 3 cut(s) 240, 361, 486
Hsp92II CATG 3 cut(s) 171, 224, 286
HspAI GCGC 2 cut(s) 407, 552
Kzo9I GATC 3 cut(s) 212, 637, 775
Lsp1109I GCAGC 3 cut(s) 91, 311, 395
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 811
MaeII ACGT 3 cut(s) 240, 361, 486
MalI GATC 3 cut(s) 214, 639, 777
MboI GATC 3 cut(s) 212, 637, 775
MboII GAAGA 1 cut(s) 592
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 5 cut(s) 26, 136, 541, 735, 799
MmeI TCCRAC 2 cut(s) 73, 541
MseI TTAA 3 cut(s) 50, 177, 428
MspA1I CMGCKG 2 cut(s) 71, 386
MspI CCGG 1 cut(s) 667
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 296, 341
NdeI CATATG 4 cut(s) 676, 703, 757, 787
NdeII GATC 3 cut(s) 212, 637, 775
NlaIII CATG 3 cut(s) 171, 224, 286
NlaIV GGNNCC 1 cut(s) 693
NspI RCATGY 2 cut(s) 171, 286
PaeI GCATGC 1 cut(s) 286
PaqCI CACCTGC 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 1 cut(s) 510
PinAI ACCGGT 1 cut(s) 666
PkrI GCNGC 5 cut(s) 106, 301, 334, 351, 385
Ppu21I YACGTR 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 691
PshBI ATTAAT 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 810
Psp5II RGGWCCY 1 cut(s) 691
Psp6I CCWGG 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 4 cut(s) 371, 664, 691, 745
PspPPI RGGWCCY 1 cut(s) 691
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 2 cut(s) 71, 386
RsaI GTAC 3 cut(s) 451, 485, 532
RsaNI GTAC 3 cut(s) 450, 484, 531
SacI GAGCTC 1 cut(s) 810
SaqAI TTAA 3 cut(s) 50, 177, 428
SatI GCNGC 5 cut(s) 105, 300, 333, 350, 384
Sau3AI GATC 3 cut(s) 212, 637, 775
Sau96I GGNCC 4 cut(s) 371, 664, 691, 745
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 1 cut(s) 116
SinI GGWCC 4 cut(s) 371, 664, 691, 745
SnaBI TACGTA 1 cut(s) 487
SphI GCATGC 1 cut(s) 286
Sse9I AATT 5 cut(s) 26, 136, 541, 735, 799
SsiI CCGC 2 cut(s) 332, 349
SspMI CTAG 1 cut(s) 811
SstI GAGCTC 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 3 cut(s) 243, 364, 489
TasI AATT 5 cut(s) 26, 136, 541, 735, 799
TauI GCSGC 2 cut(s) 335, 352
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 3 cut(s) 50, 177, 428
Tru9I TTAA 3 cut(s) 50, 177, 428
TseI GCWGC 3 cut(s) 104, 299, 383
TspDTI ATGAA 7 cut(s) 209, 666, 693, 720, 747, 774, 804
VpaK11BI GGWCC 4 cut(s) 371, 664, 691, 745
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 1 cut(s) 735
XceI RCATGY 2 cut(s) 171, 286
XmiI GTMKAC 6 cut(s) 644, 671, 698, 725, 752, 782
XspI CTAG 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.