FvH4_6g07440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012318
Physical Location & Seq
Forward (+)
4455777 .. 4458149
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07440.t1

Sequence Viewer

Length: 924 bp
ATGGATTTCCAGATGAACAGGATCCAAGTAGCGGCCTTCGTTATTGGCATCATCGTCCTCAGTATCACAGCTGAAAAATGTCGGCAGATGGTTGGGGAAGAGCATTCGTCCCAGAGTGGGAAGTTTACAATTATGAACTGCTTTGATATGAGTTCTGGAACACTAGCTTGTGGGGTGAAAGAGGGTGTGAAACTATATGCCAACAACATCAGATCTGCTCAGGTCGAGGCAGCAAGGCATAAAGCAATTGAAAGTGCCTTGGCTGATGCATTGTCACAGGGGATGACTGCTAACGAAGCGGCCAAGCTAGCACAGAAAGCAGGAGCAAAAGCAGCAAAACTAGCAAAACGACAAGCCAAGCGGATAATAGGTCCTATAATCTCGTCTGGATGGGACTTTTCTGAAGCTATTTACTACGGTGGTGCAGTAACAGAAGGGATCGTCAGGGGCACTGGCACCTTGTTTGGCACCTATGCTGGAGGTTTTCTAGGAGACCAAAGGCTTGGGAGATTTGGTTATCTTGTGGGAAGTCAATTGGGCAGTTGGGTAGGAGGCAGGATTGGATTGATGGTGTATGATGTGGTTAGTGGAGTTAATTACATAATTAGATTTGGTATACCCGAAAGTAGTGAAGTTGGTGAAGCTCCATCTTATGAAAATTCTGATGACTCTTACGTTAGTGAAGCCCCTACAGACACGAGCTCCGAAGATTCTTACATTAGTCAATTGGGCAGCTGGGTAGGAGATAGGATTAAATTGATGGTCTATGATATGGTTTTTGGTACACCCGAAAGTAGTGAAGTTGAAGCTCCTCCTTATGAAAGTTCTGATGACTCTTATGTTAGTGAAGCCCCTACATACACGAGCTCTGAAAATTCTAACGAATACGAGTCTTCGTACGAATCTCCCAATGAAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

32.99

Weight (kDa)

4.59

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56423 AT1G56423
fragaria_vesca FvH4_6g07440
malus_domestica MD04G1193100.v1.1 MD12G1206000.v1.1
prunus_persica Prupe.6G313200_v2.0.a1
pyrus_communis pycom04g08470 pycom04g17090 pycom12g19390
rosa_chinensis RchiOBHm_Chr3g0457041
rosa_laevigata RLG00000025249
rosa_multiflora Rmu_sc0000488.1_g000003
rosa_roxburghii Rroxscaffold_6G00422240
rosa_rugosa Rorug03G0018700
rosa_samantha Rh3AG078500 Rh3BG080300 Rh3CG080300 Rh3DG082100
rosa_wichuraiana Rw3G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 455, 467
AccI GTMKAC 1 cut(s) 616
AciI CCGC 3 cut(s) 32, 299, 361
AclWI GGATC 3 cut(s) 16, 29, 446
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 658, 874
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 2 cut(s) 784, 899
AfiI CCNNNNNNNGG 2 cut(s) 31, 117
AgsI TTSAA 2 cut(s) 251, 806
Alw21I GWGCWC 3 cut(s) 704, 869, 921
Alw26I GTCTC 1 cut(s) 486
AlwI GGATC 3 cut(s) 16, 29, 446
AoxI GGCC 2 cut(s) 33, 300
ApeKI GCWGC 3 cut(s) 230, 332, 732
ApoI RAATTY 2 cut(s) 658, 874
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 187, 650
AsuNHI GCTAGC 1 cut(s) 307
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 452
BamHI GGATCC 1 cut(s) 21
BanI GGYRCC 2 cut(s) 455, 467
BanII GRGCYC 3 cut(s) 704, 869, 921
BauI CACGAG 2 cut(s) 697, 862
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 3 cut(s) 704, 869, 921
BbvI GCAGC 3 cut(s) 242, 344, 744
BccI CCATC 5 cut(s) 82, 384, 562, 655, 754
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 4 cut(s) 164, 308, 341, 488
BfmI CTRYAG 1 cut(s) 690
BglII AGATCT 1 cut(s) 212
BisI GCNGC 5 cut(s) 33, 231, 300, 333, 733
BlsI GCNGC 5 cut(s) 34, 232, 301, 334, 734
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 3 cut(s) 23, 457, 469
BmsI GCATC 2 cut(s) 57, 256
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 258
BsaXI ACNNNNNCTCC 4 cut(s) 499, 529, 686, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 117
Bse1I ACTGG 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 288, 395
BseLI CCNNNNNNNGG 2 cut(s) 31, 117
BseMII CTCAG 2 cut(s) 73, 233
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 801
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 242, 344, 744
BseYI CCCAGC 1 cut(s) 735
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 2 cut(s) 35, 302
BshNI GGYRCC 2 cut(s) 455, 467
BsiHKAI GWGCWC 3 cut(s) 704, 869, 921
BsiWI CGTACG 1 cut(s) 897
BslFI GGGAC 2 cut(s) 94, 407
BslI CCNNNNNNNGG 2 cut(s) 31, 117
BsmAI GTCTC 1 cut(s) 486
BsmFI GGGAC 2 cut(s) 94, 407
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 2 cut(s) 35, 302
Bso31I GGTCTC 1 cut(s) 486
Bsp1286I GDGCHC 4 cut(s) 452, 704, 869, 921
Bsp143I GATC 3 cut(s) 21, 212, 438
BspACI CCGC 3 cut(s) 32, 299, 361
BspANI GGCC 2 cut(s) 35, 302
BspCNI CTCAG 2 cut(s) 72, 232
BspLI GGNNCC 3 cut(s) 23, 457, 469
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 3 cut(s) 16, 29, 446
BspQI GCTCTTC 2 cut(s) 93, 909
BspT107I GGYRCC 2 cut(s) 455, 467
BspTNI GGTCTC 1 cut(s) 486
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 3 cut(s) 21, 212, 438
BssNAI GTATAC 1 cut(s) 617
BssSI CACGAG 2 cut(s) 697, 862
BssT1I CCWWGG 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 617
Bst2BI CACGAG 2 cut(s) 697, 862
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 2 cut(s) 93, 909
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 59, 219
BstF5I GGATG 2 cut(s) 288, 395
BstKTI GATC 3 cut(s) 24, 215, 441
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 3 cut(s) 21, 212, 438
BstMWI GCNNNNNNNGC 5 cut(s) 296, 308, 317, 332, 341
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 242, 344, 744
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 2 cut(s) 21, 212
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 2 cut(s) 21, 212
BstZ17I GTATAC 1 cut(s) 617
BsuRI GGCC 2 cut(s) 35, 302
BtsCI GGATG 2 cut(s) 288, 395
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 783, 898
CviQI GTAC 2 cut(s) 783, 898
DdeI CTNAG 2 cut(s) 59, 219
DpnI GATC 3 cut(s) 23, 214, 440
DpnII GATC 3 cut(s) 21, 212, 438
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 93, 909
EarI CTCTTC 2 cut(s) 93, 909
Ecl136II GAGCTC 3 cut(s) 702, 867, 919
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 3 cut(s) 704, 869, 921
Eco31I GGTCTC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 3 cut(s) 702, 867, 919
Eco57I CTGAAG 1 cut(s) 423
EcoICRI GAGCTC 3 cut(s) 702, 867, 919
EcoO109I RGGNCCY 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 3 cut(s) 704, 869, 921
ErhI CCWWGG 1 cut(s) 258
FaqI GGGAC 2 cut(s) 94, 407
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 33, 231, 300, 333, 733
FokI GGATG 2 cut(s) 295, 402
FriOI GRGCYC 3 cut(s) 704, 869, 921
Fsp4HI GCNGC 5 cut(s) 33, 231, 300, 333, 733
FspBI CTAG 4 cut(s) 164, 308, 341, 488
GluI GCNGC 5 cut(s) 33, 231, 300, 333, 733
GsaI CCCAGC 1 cut(s) 739
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 35, 302
HinfI GANTC 5 cut(s) 668, 710, 833, 890, 902
HphI GGTGA 2 cut(s) 187, 650
Hpy166II GTNNAC 3 cut(s) 126, 617, 785
Hpy188I TCNGA 7 cut(s) 212, 403, 664, 706, 829, 871, 923
Hpy188III TCNNGA 3 cut(s) 10, 156, 387
Hpy8I GTNNAC 3 cut(s) 126, 617, 785
HpyAV CCTTC 2 cut(s) 46, 428
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 2 cut(s) 269, 425
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 308, 317, 332, 341
HpyF3I CTNAG 2 cut(s) 59, 219
HpySE526I ACGT 1 cut(s) 675
Kzo9I GATC 3 cut(s) 21, 212, 438
LguI GCTCTTC 2 cut(s) 93, 909
LmnI GCTCC 4 cut(s) 323, 649, 707, 814
Lsp1109I GCAGC 3 cut(s) 242, 344, 744
LweI GCATC 2 cut(s) 57, 256
MaeI CTAG 4 cut(s) 164, 308, 341, 488
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 2 cut(s) 273, 427
MalI GATC 3 cut(s) 23, 214, 440
MboI GATC 3 cut(s) 21, 212, 438
MboII GAAGA 3 cut(s) 110, 719, 885
MfeI CAATTG 3 cut(s) 246, 533, 725
MflI RGATCY 2 cut(s) 21, 212
MhlI GDGCHC 4 cut(s) 452, 704, 869, 921
MluCI AATT 9 cut(s) 129, 246, 533, 595, 603, 658, 725, 755, 874
MlyI GAGTC 3 cut(s) 662, 827, 899
MnlI CCTC 6 cut(s) 68, 175, 220, 473, 545, 822
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 2 cut(s) 594, 753
MspA1I CMGCKG 2 cut(s) 71, 735
MunI CAATTG 3 cut(s) 246, 533, 725
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 5 cut(s) 296, 308, 317, 332, 341
NdeII GATC 3 cut(s) 21, 212, 438
NheI GCTAGC 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 23, 457, 469
NmuCI GTSAC 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 271
PciSI GCTCTTC 2 cut(s) 93, 909
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 710, 902
Pfl23II CGTACG 1 cut(s) 897
PkrI GCNGC 5 cut(s) 34, 232, 301, 334, 734
PleI GAGTC 3 cut(s) 662, 827, 898
PpsI GAGTC 3 cut(s) 662, 827, 898
PpuMI RGGWCCY 1 cut(s) 371
Psp124BI GAGCTC 3 cut(s) 704, 869, 921
Psp5II RGGWCCY 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 735
PspLI CGTACG 1 cut(s) 897
PspN4I GGNNCC 3 cut(s) 23, 457, 469
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
PsuI RGATCY 2 cut(s) 21, 212
PvuII CAGCTG 2 cut(s) 71, 735
RsaI GTAC 2 cut(s) 784, 899
RsaNI GTAC 2 cut(s) 783, 898
SacI GAGCTC 3 cut(s) 704, 869, 921
SapI GCTCTTC 2 cut(s) 93, 909
SaqAI TTAA 2 cut(s) 594, 753
SatI GCNGC 5 cut(s) 33, 231, 300, 333, 733
Sau3AI GATC 3 cut(s) 21, 212, 438
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 3 cut(s) 662, 827, 899
SduI GDGCHC 4 cut(s) 452, 704, 869, 921
SfaNI GCATC 2 cut(s) 57, 256
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 371
Sse9I AATT 9 cut(s) 129, 246, 533, 595, 603, 658, 725, 755, 874
SsiI CCGC 3 cut(s) 32, 299, 361
SspMI CTAG 4 cut(s) 164, 308, 341, 488
SstI GAGCTC 3 cut(s) 704, 869, 921
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 678
TaqI TCGA 1 cut(s) 225
TasI AATT 9 cut(s) 129, 246, 533, 595, 603, 658, 725, 755, 874
TauI GCSGC 2 cut(s) 35, 302
TfiI GAWTC 2 cut(s) 710, 902
Tru1I TTAA 2 cut(s) 594, 753
Tru9I TTAA 2 cut(s) 594, 753
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 3 cut(s) 230, 332, 732
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 4 cut(s) 29, 149, 669, 834
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 658, 874
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 4 cut(s) 164, 308, 341, 488
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.