MD04G1193100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012318
Physical Location & Seq
Reverse (-)
28304003 .. 28304869
867 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1193100.v1.1.491

Sequence Viewer

Length: 867 bp
ATGTTTTATGTTCTTAATATTGTACATATGTGCTTGTTTAGACTAGAGTCTCGATTTTGTGCTCGTGGCATTTTGCGATTTACTAATATATATATATATGTGTGTGTGTGTGTAATGCAATATTCGGTTCTTGGTAATTTAGTATTTGACAATGTGTATCAAATACTTATTTGGATTATTTTCCTTGTAGCTGAAAAATGTCGGCAACTGGTTGGGGAAGAGAGTTCATCTCAGAGTGGGAAGTTTACATTCTTGAACTGCTTTGACATGAGTTCCGGAACACTAGCTTGTTCTGTCAAAGAGGGAGTGAAGCTCTATGTTAACAACATCAGAGCTTCTCATGTTGAGACGATGAGGCATAAAGCAATTGGAAGTGCATTGGCTGATGCATTGTCGCAGGGGATATCGGCTAAAGATGCAGCCAAACAAGCACAGAAGGCAGGAGCAAAGGCAGCGAAACTGGCAACACGGCAAGCCAAGCGGATAATAGGTCCTATCATCTCTTCTGGATGGGACTTCTCTGAAGCTATGTACTACGGTGGTGCAATAACAGAAGGGAGTGTCAGGGGCACCGGAACCATGTTTGGCACCTATGCTGGAGGGTTTCTAGGAGAGCAACGGCTTGGGAGATTTGGTTACCTTGTGGGAAGTCAATTGGGCAGTTGGGTCGGAGGTAGAATTGGATTGATGGTCTATGATGTGATTAACGCGGCGAATTACATACTCCAATTTGGTATACCCGAACAAAGTGAAGCTCGTGAAACTTCCGCTTACGAAGCCCCCGCGAATGAGAACCCTGAAGCTGAAGCCTATGAATCTTCCACCTATGAGAACTCCCAAACATATGAACATTCTGAACTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.7

Weight (kDa)

6.89

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56423 AT1G56423
fragaria_vesca FvH4_6g07440
malus_domestica MD04G1193100.v1.1 MD12G1206000.v1.1
prunus_persica Prupe.6G313200_v2.0.a1
pyrus_communis pycom04g08470 pycom04g17090 pycom12g19390
rosa_chinensis RchiOBHm_Chr3g0457041
rosa_laevigata RLG00000025249
rosa_multiflora Rmu_sc0000488.1_g000003
rosa_roxburghii Rroxscaffold_6G00422240
rosa_rugosa Rorug03G0018700
rosa_samantha Rh3AG078500 Rh3BG080300 Rh3CG080300 Rh3DG082100
rosa_wichuraiana Rw3G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 569, 587
AccI GTMKAC 1 cut(s) 736
AccII CGCG 2 cut(s) 710, 785
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 4 cut(s) 481, 710, 768, 783
AcuI CTGAAG 3 cut(s) 543, 819, 825
AfaI GTAC 2 cut(s) 24, 533
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 7 cut(s) 191, 287, 313, 335, 527, 755, 803
AluI AGCT 7 cut(s) 191, 287, 313, 335, 527, 755, 803
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 2 cut(s) 54, 341
Aor13HI TCCGGA 1 cut(s) 275
ApeKI GCWGC 2 cut(s) 419, 452
AspS9I GGNCC 1 cut(s) 491
AvaII GGWCC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 572
BanI GGYRCC 2 cut(s) 569, 587
BauI CACGAG 2 cut(s) 63, 756
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 431, 464
BccI CCATC 2 cut(s) 504, 682
BceAI ACGGC 2 cut(s) 485, 635
BcgI CGANNNNNNTGC 2 cut(s) 649, 683
BcoDI GTCTC 2 cut(s) 54, 341
BfaI CTAG 3 cut(s) 44, 284, 608
BisI GCNGC 3 cut(s) 420, 453, 711
BlsI GCNGC 3 cut(s) 421, 454, 712
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 3 cut(s) 571, 577, 589
BmsI GCATC 2 cut(s) 376, 406
BoxI GACNNNNGTC 1 cut(s) 46
BplI GAGNNNNNCTC 4 cut(s) 214, 246, 297, 329
BpmI CTGGAG 1 cut(s) 618
BsaWI WCCGGW 2 cut(s) 275, 572
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bse1I ACTGG 2 cut(s) 213, 465
BseAI TCCGGA 1 cut(s) 275
BseGI GGATG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 245, 851
BseNI ACTGG 2 cut(s) 213, 465
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 2 cut(s) 431, 464
Bsh1236I CGCG 2 cut(s) 710, 785
BshNI GGYRCC 2 cut(s) 569, 587
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 276, 573
BslFI GGGAC 1 cut(s) 527
BsmAI GTCTC 2 cut(s) 54, 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 64, 572
Bsp13I TCCGGA 1 cut(s) 275
Bsp1407I TGTACA 1 cut(s) 22
BspACI CCGC 4 cut(s) 481, 710, 768, 783
BspCNI CTCAG 2 cut(s) 244, 852
BspEI TCCGGA 1 cut(s) 275
BspFNI CGCG 2 cut(s) 710, 785
BspLI GGNNCC 3 cut(s) 571, 577, 589
BspT107I GGYRCC 2 cut(s) 569, 587
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 2 cut(s) 213, 465
BssNAI GTATAC 1 cut(s) 737
BssSI CACGAG 2 cut(s) 63, 756
Bst1107I GTATAC 1 cut(s) 737
Bst2BI CACGAG 2 cut(s) 63, 756
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 2 cut(s) 213, 508
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 231, 860
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 1 cut(s) 515
BstFNI CGCG 2 cut(s) 710, 785
BstMAI GTCTC 2 cut(s) 54, 341
BstMWI GCNNNNNNNGC 7 cut(s) 416, 428, 437, 452, 461, 478, 776
BstPAI GACNNNNGTC 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 635
BstSLI GKGCMC 1 cut(s) 572
BstUI CGCG 2 cut(s) 710, 785
BstV1I GCAGC 2 cut(s) 431, 464
BstZ17I GTATAC 1 cut(s) 737
BtsCI GGATG 1 cut(s) 515
Cac8I GCNNGC 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 491
Csp6I GTAC 2 cut(s) 23, 532
CviAII CATG 3 cut(s) 268, 341, 580
CviQI GTAC 2 cut(s) 23, 532
DdeI CTNAG 2 cut(s) 231, 860
Eam1104I CTCTTC 2 cut(s) 213, 508
EarI CTCTTC 2 cut(s) 213, 508
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 3 cut(s) 543, 819, 825
Eco91I GGTNACC 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 491
EcoO65I GGTNACC 1 cut(s) 635
EcoRV GATATC 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 3 cut(s) 271, 344, 583
FaqI GGGAC 1 cut(s) 527
FatI CATG 3 cut(s) 267, 340, 579
FauI CCCGC 1 cut(s) 790
FauNDI CATATG 2 cut(s) 27, 844
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 420, 453, 711
FokI GGATG 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 420, 453, 711
FspBI CTAG 3 cut(s) 44, 284, 608
GluI GCNGC 3 cut(s) 420, 453, 711
GsuI CTGGAG 1 cut(s) 618
HapII CCGG 2 cut(s) 276, 573
Hin1II CATG 3 cut(s) 271, 344, 583
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 47, 815
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 2 cut(s) 276, 573
Hpy166II GTNNAC 3 cut(s) 246, 322, 737
Hpy188I TCNGA 5 cut(s) 234, 332, 523, 671, 856
Hpy188III TCNNGA 5 cut(s) 51, 253, 276, 507, 758
Hpy8I GTNNAC 3 cut(s) 246, 322, 737
HpyAV CCTTC 2 cut(s) 430, 548
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4V TGCA 5 cut(s) 118, 377, 389, 419, 545
HpyF10VI GCNNNNNNNGC 7 cut(s) 416, 428, 437, 452, 461, 478, 776
HpyF3I CTNAG 2 cut(s) 231, 860
Hsp92II CATG 3 cut(s) 271, 344, 583
Kpn2I TCCGGA 1 cut(s) 275
KspAI GTTAAC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 2 cut(s) 431, 464
LweI GCATC 2 cut(s) 376, 406
MaeI CTAG 3 cut(s) 44, 284, 608
MaeIII GTNAC 1 cut(s) 635
MboII GAAGA 3 cut(s) 230, 495, 810
MfeI CAATTG 2 cut(s) 366, 653
MhlI GDGCHC 2 cut(s) 64, 572
MluCI AATT 6 cut(s) 136, 366, 653, 678, 715, 728
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 5 cut(s) 295, 348, 593, 665, 855
Mph1103I ATGCAT 1 cut(s) 391
MroI TCCGGA 1 cut(s) 275
MseI TTAA 3 cut(s) 15, 321, 705
MspI CCGG 2 cut(s) 276, 573
MunI CAATTG 2 cut(s) 366, 653
MvnI CGCG 2 cut(s) 710, 785
MwoI GCNNNNNNNGC 7 cut(s) 416, 428, 437, 452, 461, 478, 776
NdeI CATATG 2 cut(s) 27, 844
NlaIII CATG 3 cut(s) 271, 344, 583
NlaIV GGNNCC 3 cut(s) 571, 577, 589
NsiI ATGCAT 1 cut(s) 391
PfeI GAWTC 1 cut(s) 815
PkrI GCNGC 3 cut(s) 421, 454, 712
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 491
PshAI GACNNNNGTC 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 491
PspEI GGTNACC 1 cut(s) 635
PspN4I GGNNCC 3 cut(s) 571, 577, 589
PspPI GGNCC 1 cut(s) 491
PspPPI RGGWCCY 1 cut(s) 491
RsaI GTAC 2 cut(s) 24, 533
RsaNI GTAC 2 cut(s) 23, 532
SaqAI TTAA 3 cut(s) 15, 321, 705
SatI GCNGC 3 cut(s) 420, 453, 711
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 2 cut(s) 64, 572
SfaNI GCATC 2 cut(s) 376, 406
SinI GGWCC 1 cut(s) 491
Sse9I AATT 6 cut(s) 136, 366, 653, 678, 715, 728
SsiI CCGC 4 cut(s) 481, 710, 768, 783
SspI AATATT 2 cut(s) 19, 122
SspMI CTAG 3 cut(s) 44, 284, 608
TaaI ACNGT 1 cut(s) 539
TaqI TCGA 1 cut(s) 52
TasI AATT 6 cut(s) 136, 366, 653, 678, 715, 728
TatI WGTACW 2 cut(s) 22, 531
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 3 cut(s) 15, 321, 705
Tru9I TTAA 3 cut(s) 15, 321, 705
TseI GCWGC 2 cut(s) 419, 452
TspDTI ATGAA 3 cut(s) 216, 828, 861
VpaK11BI GGWCC 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 736
XspI CTAG 3 cut(s) 44, 284, 608
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.