Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

1487930 .. 1490112

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAACAGTCGAGCAGCAGCAACAGCCACAACCGGAGGAGGCCTCAAAGGAAGCCATGGCCACGGTGGCCGAGAACGCACCGATCACAGCGGAGAGGAAGGTCCGCAATGACTTGGAGACCAAACTCCCAAAGCCTTACTTGCCTCGAGCTATGGTTGCACCTGATATGGAGAACATCAATGGCACCTGGGCTCATAAACATCAAAATATGTCTGTGCTTCAACAGCATGCAGCTTTTTTTGACCAAGACAATGATGGTATCATCTTCCCTTCCGAGACATTCAGAGGGTTTCGTCAACTTGGGTTTAATGCAGTTGCTTCTTTTATTTTCATGGTTCTTGTTCATGGAGCAATGAGTTATGCTACTCTGCCTACATGGATTCCTTCACCCTACTTCGCAATTCACATACGAAACATACACAAGGCAAAGCATGGAAGTGATTCCGGCATTTATGATACTGAAGGAAGGTATATCCCGGCAAACCTTGAGATCATGTTCAGCAAGTATGCTCGCACGGTCCCTGATAAGCTTAGTTTCAAGGAGCTGTGGCACATGACTCAAGCTAACCGTGACGCCTTTGATTTCTTTGGCTGCCAAACTCGAATGGGGAGTTCTATATGTTCTGGCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

212

Amino Acids

24.03

Weight (kDa)

7.1

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	70 - 201	4.3e-57	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	2 cut(s)	92, 106
AcoI	YGGCCR	2 cut(s)	60, 69
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	576
AgsI	TTSAA	2 cut(s)	224, 541
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	5 cut(s)	152, 236, 532, 547, 566
AluI	AGCT	5 cut(s)	152, 236, 532, 547, 566
Alw26I	GTCTC	2 cut(s)	113, 272
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	3 cut(s)	42, 60, 69
ApeKI	GCWGC	4 cut(s)	16, 19, 233, 594
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	2 cut(s)	103, 520
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	103, 520
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	28, 31, 245, 581
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	113, 272
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	17, 20, 234, 595
BlsI	GCNGC	4 cut(s)	18, 21, 235, 596
Bme1390I	CCNGG	2 cut(s)	190, 479
Bme18I	GGWCC	2 cut(s)	103, 520
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	103, 520
BmiI	GGNNCC	2 cut(s)	187, 522
BmrFI	CCNGG	2 cut(s)	190, 479
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	2 cut(s)	509, 546
BpuMI	CCSGG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	57, 63, 189
BsaWI	WCCGGW	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	115, 360
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	57, 63, 189
BseMI	GCAATG	2 cut(s)	115, 360
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	28, 31, 245, 581
BshFI	GGCC	3 cut(s)	44, 62, 71
BshNI	GGYRCC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	35, 447, 479
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	113, 272
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	44, 62, 71
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	84, 492
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	92, 106
BspANI	GGCC	3 cut(s)	44, 62, 71
BspLI	GGNNCC	2 cut(s)	187, 522
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	115, 360
BssECI	CCNNGG	3 cut(s)	57, 63, 189
BssMI	GATC	2 cut(s)	84, 492
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	4 cut(s)	10, 67, 520, 572
BstACI	GRCGYC	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	231, 514
BstDEI	CTNAG	1 cut(s)	533
BstDSI	CCRYGG	2 cut(s)	57, 63
BstKTI	GATC	2 cut(s)	87, 495
BstMAI	GTCTC	2 cut(s)	113, 272
BstMBI	GATC	2 cut(s)	84, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 68, 77, 142, 158, 226
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	188, 477
BstV1I	GCAGC	4 cut(s)	28, 31, 245, 581
BsuRI	GGCC	3 cut(s)	44, 62, 71
BtgI	CCRYGG	2 cut(s)	57, 63
Cac8I	GCNNGC	2 cut(s)	231, 514
Cfr13I	GGNCC	2 cut(s)	103, 520
CseI	GACGC	1 cut(s)	584
CviAII	CATG	8 cut(s)	58, 230, 334, 347, 378, 434, 496, 556
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	2 cut(s)	86, 494
DpnII	GATC	2 cut(s)	84, 492
EaeI	YGGCCR	2 cut(s)	60, 69
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	103, 520
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	8 cut(s)	57, 229, 333, 346, 377, 433, 495, 555
Fnu4HI	GCNGC	4 cut(s)	17, 20, 234, 595
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	4 cut(s)	17, 20, 234, 595
GluI	GCNGC	4 cut(s)	17, 20, 234, 595
HaeIII	GGCC	3 cut(s)	44, 62, 71
HapII	CCGG	3 cut(s)	35, 447, 479
HgaI	GACGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	3 cut(s)	382, 443, 559
HpaII	CCGG	3 cut(s)	35, 447, 479
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	277, 287
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	5 cut(s)	94, 282, 396, 458, 462
HpyCH4III	ACNGT	4 cut(s)	10, 67, 520, 572
HpyCH4V	TGCA	3 cut(s)	161, 233, 314
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 68, 77, 142, 158, 226
HpyF3I	CTNAG	1 cut(s)	533
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
Kzo9I	GATC	2 cut(s)	84, 492
LmnI	GCTCC	2 cut(s)	350, 544
LpnPI	CCDG	8 cut(s)	48, 175, 177, 202, 460, 492, 537, 612
Lsp1109I	GCAGC	4 cut(s)	28, 31, 245, 581
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	2 cut(s)	86, 494
MboI	GATC	2 cut(s)	84, 492
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	31, 34, 55, 90, 156, 281
Mox20I	TGGCCA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	35, 447, 479
MspR9I	CCNGG	2 cut(s)	190, 479
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	6 cut(s)	25, 68, 77, 142, 158, 226
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	84, 492
NlaIII	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
NlaIV	GGNNCC	2 cut(s)	187, 522
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	572
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	382, 443
PkrI	GCNGC	4 cut(s)	18, 21, 235, 596
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	187, 522
PspPI	GGNCC	2 cut(s)	103, 520
PspXI	VCTCGAGB	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	17, 20, 234, 595
Sau3AI	GATC	2 cut(s)	84, 492
Sau96I	GGNCC	2 cut(s)	103, 520
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	2 cut(s)	190, 479
SduI	GDGCHC	1 cut(s)	196
SfiI	GGCCNNNNNGGCC	1 cut(s)	68
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	103, 520
SlaI	CTCGAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	3 cut(s)	147, 488, 561
SmoI	CTYRAG	3 cut(s)	147, 488, 561
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	1 cut(s)	402
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	92, 106
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	188, 477
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	4 cut(s)	10, 67, 520, 572
TaqI	TCGA	3 cut(s)	12, 148, 604
TasI	AATT	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	382, 443
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	4 cut(s)	16, 19, 233, 594
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	2 cut(s)	322, 335
VpaK11BI	GGWCC	2 cut(s)	103, 520
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 254
XhoI	CTCGAG	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.