Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

6285920 .. 6293159

Gene Structure 7240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGTTGAAGCTTCTCTCTTCTTCCTCCTCGTGCCTACAGGCCGGAGCCCACAGTCTGGGCCCTAAATTGGGCGTCCGGCCCGAAATGACTTCGCCGTTACTCCGAGTTCTGAACTCCCTCACCGGCCGGAATCGGCCCAATATGGCTCGCCGGGCTTTTTTTTGCTCGGATTCAAGCGACGGCTCCGATCAAGTTGTTGAGTTGGAGGCCAAGACTGGGACTGAGGCTGAGGCTGAGGCTGAGGCTAAGGCTTCTTCAGCTATAGTGTCCACGAACCCTAGACCAGAAGATTATCTAACGGTTTTAGCTTTGCCATTGCCGCATAGACCACTCTTTCCAGGGTTCTACATGCCAATTTATGTGAAGGATCCGAAATTGCTAGCGGCTTTACAGGAAAGCCGGAAACGGCAAGCTCCATATGCTGGAGCTTTTCTGGTGAAGGATGAGCCAGGGACTGATCCAAGTTTGGTATCAGGTTCTGATACAGAGAAAAGCATATATGAATTAAAAGGGAAAGCCTTGTTTAATCGATTGCATGAAGTTGGTACGCTTGCCCAGATTTCTAGTATCCAAGGCGACCAAGTAGTGCTTATTGGTCATAGACGACTTCGAATTACAGAGATGGTTGATGAGGATCCCCTGACTGTAAAAAATAAACCATATAACAAGGATGATGATGTCATAAAGGCTACGTCATTTGAGGTTATAGCAACCTTAAGAGATGTTCTGAAGACTAGTTCTCTTTGGAGAGATCATGTTCAAACATACACTCAGCATATAGGTGACTTTAATTTTCCGAGGTTAGCAGATTTTGGAGCTGCAATATCTGGTGCAAACAAATTGCAGTGCCAGCAAGTGCTTGAAGAGCTAGACGTGTACAAACGTTTAAATCTTACACTAGAATTGGTGAAGAAAGAGATGGAAATCAGCAAGCTTCAGGAAACTATTGCAAAAGCGATTGAAGAGAAGATAAGCCGTGAGCAACGCCGCTACTTGTTGAATGAGCAGCTTAAAGCCATAAAGAAGGAACTGGGATTAGAGACAGATGACAAGACAGCACTTTCTGCAAAGTTTAGGGAGAGGCTCGAACCAAACAAGGATAAATGTCCACCTCATGTTTTGCAAGTTATAGAAGAAGAGCTTGCAAAACTACAGCTGCTGGAGGCCAGTTCGAGTGAATTTAACGTGACACGTAATTACCTAGATTGGTTGACGTCAATTCCCTGGGGAAATTACAGTAATGAGAACTTTGATGTTCTTCGAGCTGAAAAAATTCTTGATGAAGACCATTACGGATTAAACGATGTAAAGGAAAGGATATTGGAATTTATTGCTGTTGGAAAACTCAGAGGAATCTCACAAGGAAAAATCATTTGTCTCTCTGGCCCTCCTGGAGTTGGCAAAACCAGCATTGGTCGTTCAATTGCACGTGCATTGAATCGCAATTTCTTTCGATTTTCTGTTGGAGGGTTATCTGATGTCGCTGAAATCAAGGGACATCGCCGAACCTATATCGGTGCTATGCCAGGAAAGATGGTTCAATGCCTTAAAAATGTTGGAACAGCTAACCCTCTAGTTCTAATTGATGAGATCGACAAGTTGGGAATTGGACATGCTGGTGATCCGGCTAGTGCTTTGTTGGAGCTTCTTGATCCAGAGCAAAATGCTAATTTTCTAGATCATTATCTTGATGTTCCAATCGACCTAACAAAGGTTCTGTTTGTTTGTACAGCAAATGTTGTCGAGAATATACCAGCTCCTCTCTTGGATAGAATGGAGGTCATTTCCATAGCTGGGTATATTACTGATGAGAAAATGCACATTGCTAGAGACTATTTGGAGAAGACGACACGTGAAGCATGCGGCATCGAACCTGAACAGGTTGAAGTGACCAATGCAGCACTTCTTGCTCTCGTAGAAAATTATTGCCGAGAAGCAGGTGTTCGGAACCTCCAAAAGCACATAGAAAAGATCTATCGTAAGATAGCTTTGCAACTTGTTAGGCAAGGACAGTCAGATGAACCTGTAGATGCTGACGAAGTACAGTCTCCCGTCAGTAAAACTGATCTCCCAGATGAACCTGCACTTGTTGCAGATACTGATGAAGCCAAAGTAGAAGATTTTGCGGGCGTTAAACAGACTGCAGATGAATCAGCAGAGGGTAAAGACCATGAACATAATACTGAAACCTCTGTGGGAAGTGTCACTATCCCAGATGAAACTGGAGCTTCTGAAGTTCAGGTTGCAGATACTGGTGAACTTATGCATTCAAAGGATACAGAAGAAACTCAGAAAATTCAGGAGGGTGAAGCCAAAAAACCAGTTGAGAAAGTGATGGTTAATGAATCAAACTTGGGTGACTTTGTTGGCAAACCAGTTTTCCATGCGGATCGCATCTATGAACAGACTCCAGTTGGAGTTGTCATGGGTCTTGCTTGGACTGCCATGGGTGGTTCCACCCTGTATATAGAGACCACTCAGGTCGAGGAAGGAGAGGGAAAAGGAGCGCTTCATGCTACTGGTCAACTTGGAGATGTTATGAAAGAAAGTACCCAAATTGCTCACACTGTGGCCAGAGCAATATTGCTCGAGAAAGAGCCAGAGAACACTTTCTTTGCTGATTCCAAGCTTCATCTCCATGTGCCGGCAGGGGCCACACCAAAGGATGGGCCAAGTGCTGGTTGCACCATGATCACATCCATGCTGTCCATTGCCATGAAGAAGCCTGTCAAGAAGGATTTAGCAATGACAGGGGAAGTAACACTAACTGGCAGGATCCTTCCAATTGGCGGGGTTAAGGAGAAGACAATAGCAGCGAGACGGAGTGGAGTGAAGACCATCATATTCCCTGAAGCCAACAGGAAGGATTTTGATGAGCTTGCCCCTAATGTAAAAGAAGGTCTTGATGTTCACTTTGTAGATGACTACAATCAGATATTCGCTTTGGCTTTCAGTGATGACCAGAATCAAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

992

Amino Acids

109.3

Weight (kDa)

5.23

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	101 - 305	9.8e-33	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	458 - 595	7.2e-23	ATPase family associated with various cellular activities (AAA)
Lon_lid	PF22667	619 - 670	4.2e-18	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	780 - 984	1.6e-76	Lon protease (S16) C-terminal proteolytic domain
ChlI	PF13541	832 - 953	8.2e-06	Subunit ChlI of Mg-chelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1928
AatII	GACGTC	1 cut(s)	1217
Acc36I	ACCTGC	2 cut(s)	1928, 2089
AccB7I	CCANNNNNTGG	4 cut(s)	55, 422, 2666, 2678
AciI	CCGC	7 cut(s)	320, 383, 988, 1863, 2126, 2387, 2790
AclI	AACGTT	1 cut(s)	883
AcoI	YGGCCR	2 cut(s)	124, 2571
AcsI	RAATTY	4 cut(s)	1178, 1272, 1325, 2295
AcuI	CTGAAG	5 cut(s)	240, 749, 920, 2253, 2871
AcvI	CACGTG	2 cut(s)	1430, 1853
AcyI	GRCGYC	2 cut(s)	72, 1214
AdeI	CACNNNGTG	1 cut(s)	2569
AfaI	GTAC	5 cut(s)	547, 878, 1729, 2043, 2551
AfeI	AGCGCT	1 cut(s)	2508
AflII	CTTAAG	1 cut(s)	715
AflIII	ACRYGT	3 cut(s)	873, 1190, 1850
AhlI	ACTAGT	1 cut(s)	734
AjiI	CACGTC	1 cut(s)	874
AjnI	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
AloI	GAACNNNNNNTCC	2 cut(s)	1521, 1553
Alw26I	GTCTC	6 cut(s)	1034, 1382, 1824, 2052, 2465, 2812
AlwNI	CAGNNNCTG	5 cut(s)	455, 479, 1159, 2099, 2252
Ama87I	CYCGRG	1 cut(s)	2588
Aor51HI	AGCGCT	1 cut(s)	2508
ApaI	GGGCCC	1 cut(s)	62
ApeKI	GCWGC	5 cut(s)	818, 1006, 1156, 1898, 2813
ApoI	RAATTY	4 cut(s)	1178, 1272, 1325, 2295
Asp700I	GAANNNNTTC	2 cut(s)	1272, 2609
AspLEI	GCGC	1 cut(s)	2509
AspS9I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2652, 2669
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	8 cut(s)	112, 448, 794, 919, 1631, 2267, 2318, 2369
AsuII	TTCGAA	1 cut(s)	610
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	2588
BaeGI	GKGCMC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	2573
BamHI	GGATCC	3 cut(s)	367, 634, 2775
BanII	GRGCYC	2 cut(s)	49, 62
BauI	CACGAG	1 cut(s)	28
BbrPI	CACGTG	2 cut(s)	1430, 1853
BbsI	GAAGAC	5 cut(s)	737, 1290, 1850, 2810, 2840
BbvCI	CCTCAGC	3 cut(s)	228, 234, 240
BbvI	GCAGC	5 cut(s)	805, 1018, 1143, 1910, 2825
BccI	CCATC	6 cut(s)	616, 913, 1528, 2329, 2660, 2846
BceAI	ACGGC	4 cut(s)	79, 196, 422, 960
BciT130I	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
BciVI	GTATCC	2 cut(s)	578, 2269
BclI	TGATCA	1 cut(s)	2691
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	6 cut(s)	1034, 1382, 1824, 2052, 2465, 2812
BcuI	ACTAGT	1 cut(s)	734
BfmI	CTRYAG	5 cut(s)	35, 261, 1151, 2025, 2142
BfoI	RGCGCY	1 cut(s)	2510
BfrI	CTTAAG	1 cut(s)	715
BfuAI	ACCTGC	2 cut(s)	1928, 2089
BfuI	GTATCC	2 cut(s)	578, 2269
BglII	AGATCT	1 cut(s)	1971
BisI	GCNGC	9 cut(s)	320, 384, 819, 988, 1007, 1157, 1864, 1899, 2814
BlsI	GCNGC	9 cut(s)	321, 385, 820, 989, 1008, 1158, 1865, 1900, 2815
Bme1390I	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
BmeT110I	CYCGRG	1 cut(s)	2588
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2652, 2669
BmiI	GGNNCC	9 cut(s)	46, 60, 184, 369, 636, 1949, 2455, 2653, 2777
BmrFI	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
BmrI	ACTGGG	2 cut(s)	225, 1040
BmsI	GCATC	3 cut(s)	1875, 2020, 2403
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	2 cut(s)	225, 1040
BpiI	GAAGAC	5 cut(s)	737, 1290, 1850, 2810, 2840
BpmI	CTGGAG	5 cut(s)	444, 1181, 1413, 2244, 2394
Bpu10I	CCTNAGC	4 cut(s)	228, 234, 240, 246
Bpu14I	TTCGAA	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	529
BsaAI	YACGTR	3 cut(s)	1193, 1430, 1853
BsaBI	GATNNNNATC	3 cut(s)	633, 923, 1683
BsaHI	GRCGYC	2 cut(s)	72, 1214
BsaI	GGTCTC	1 cut(s)	2465
BsaJI	CCNNGG	7 cut(s)	338, 449, 571, 797, 1223, 1224, 2445
Bse118I	RCCGGY	2 cut(s)	122, 2644
Bse3DI	GCAATG	4 cut(s)	314, 1821, 2709, 2751
Bse8I	GATNNNNATC	3 cut(s)	633, 923, 1683
BseBI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
BseCI	ATCGAT	1 cut(s)	529
BseDI	CCNNGG	7 cut(s)	338, 449, 571, 797, 1223, 1224, 2445
BseGI	GGATG	4 cut(s)	448, 676, 2671, 2696
BseJI	GATNNNNATC	3 cut(s)	633, 923, 1683
BseMI	GCAATG	4 cut(s)	314, 1821, 2709, 2751
BseMII	CTCAG	8 cut(s)	213, 219, 225, 231, 785, 1360, 2303, 2492
BseRI	GAGGAG	2 cut(s)	16, 1749
BseSI	GKGCMC	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	5 cut(s)	805, 1018, 1143, 1910, 2825
BseYI	CCCAGC	1 cut(s)	1793
BsgI	GTGCAG	1 cut(s)	2067
Bsh1285I	CGRYCG	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	529
BsiEI	CGRYCG	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	2588
BsiSI	CCGG	8 cut(s)	42, 76, 123, 127, 151, 400, 1625, 2645
BslFI	GGGAC	3 cut(s)	232, 466, 1509
BsmAI	GTCTC	6 cut(s)	1034, 1382, 1824, 2052, 2465, 2812
BsmBI	CGTCTC	1 cut(s)	2812
BsmFI	GGGAC	3 cut(s)	232, 466, 1509
BsmI	GAATGC	1 cut(s)	2266
Bso31I	GGTCTC	1 cut(s)	2465
BsoBI	CYCGRG	1 cut(s)	2588
Bsp119I	TTCGAA	1 cut(s)	610
Bsp120I	GGGCCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	49, 62
Bsp1407I	TGTACA	2 cut(s)	876, 1727
Bsp19I	CCATGG	1 cut(s)	2445
BspACI	CCGC	7 cut(s)	320, 383, 988, 1863, 2126, 2387, 2790
BspCNI	CTCAG	8 cut(s)	214, 220, 226, 232, 784, 1359, 2302, 2491
BspDI	ATCGAT	1 cut(s)	529
BspLI	GGNNCC	9 cut(s)	46, 60, 184, 369, 636, 1949, 2455, 2653, 2777
BspMAI	CTGCAG	1 cut(s)	2146
BspMI	ACCTGC	2 cut(s)	1928, 2089
BspOI	GCTAGC	1 cut(s)	383
BspQI	GCTCTTC	2 cut(s)	858, 1131
BspT104I	TTCGAA	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	2465
BsrDI	GCAATG	4 cut(s)	314, 1821, 2709, 2751
BsrFI	RCCGGY	2 cut(s)	122, 2644
BsrGI	TGTACA	2 cut(s)	876, 1727
BssAI	RCCGGY	2 cut(s)	122, 2644
BssECI	CCNNGG	7 cut(s)	338, 449, 571, 797, 1223, 1224, 2445
BssNI	GRCGYC	2 cut(s)	72, 1214
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	571, 2445
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
Bst4CI	ACNGT	7 cut(s)	53, 301, 646, 1238, 2013, 2046, 2569
Bst6I	CTCTTC	4 cut(s)	22, 858, 957, 1131
BstACI	GRCGYC	2 cut(s)	72, 1214
BstAFI	CTTAAG	1 cut(s)	715
BstAPI	GCANNNNNTGC	3 cut(s)	1064, 1907, 2090
BstAUI	TGTACA	2 cut(s)	876, 1727
BstBAI	YACGTR	3 cut(s)	1193, 1430, 1853
BstBI	TTCGAA	1 cut(s)	610
BstDEI	CTNAG	9 cut(s)	222, 228, 234, 240, 246, 771, 1346, 2289, 2478
BstDSI	CCRYGG	1 cut(s)	2445
BstENI	CCTNNNNNAGG	1 cut(s)	1709
BstF5I	GGATG	4 cut(s)	448, 676, 2671, 2696
BstH2I	RGCGCY	1 cut(s)	2510
BstHHI	GCGC	1 cut(s)	2509
BstMAI	GTCTC	6 cut(s)	1034, 1382, 1824, 2052, 2465, 2812
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
BstNSI	RCATGY	3 cut(s)	352, 1616, 1863
BstSCI	CCNGG	6 cut(s)	150, 337, 448, 1223, 1390, 1525
BstSFI	CTRYAG	5 cut(s)	35, 261, 1151, 2025, 2142
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	5 cut(s)	805, 1018, 1143, 1910, 2825
BstV2I	GAAGAC	5 cut(s)	737, 1290, 1850, 2810, 2840
BstX2I	RGATCY	4 cut(s)	367, 634, 1971, 2775
BstYI	RGATCY	4 cut(s)	367, 634, 1971, 2775
BstZI	CGGCCG	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	529
BsuI	GTATCC	2 cut(s)	578, 2269
BsuTUI	ATCGAT	1 cut(s)	529
BtgI	CCRYGG	1 cut(s)	2445
BtgZI	GCGATG	1 cut(s)	1484
BtrI	CACGTC	1 cut(s)	874
BtsCI	GGATG	4 cut(s)	448, 676, 2671, 2696
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	3 cut(s)	851, 2565, 2959
BveI	ACCTGC	2 cut(s)	1928, 2089
CaiI	CAGNNNCTG	5 cut(s)	455, 479, 1159, 2099, 2252
CfoI	GCGC	1 cut(s)	2509
Cfr10I	RCCGGY	2 cut(s)	122, 2644
Cfr13I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2652, 2669
ClaI	ATCGAT	1 cut(s)	529
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	5 cut(s)	546, 877, 1728, 2042, 2550
CviQI	GTAC	5 cut(s)	546, 877, 1728, 2042, 2550
DdeI	CTNAG	9 cut(s)	222, 228, 234, 240, 246, 771, 1346, 2289, 2478
DraI	TTTAAA	1 cut(s)	888
DraIII	CACNNNGTG	1 cut(s)	2569
EaeI	YGGCCR	2 cut(s)	124, 2571
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	4 cut(s)	22, 858, 957, 1131
EarI	CTCTTC	4 cut(s)	22, 858, 957, 1131
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	571, 2445
Eco24I	GRGCYC	2 cut(s)	49, 62
Eco31I	GGTCTC	1 cut(s)	2465
Eco47III	AGCGCT	1 cut(s)	2508
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	5 cut(s)	240, 749, 920, 2253, 2871
Eco72I	CACGTG	2 cut(s)	1430, 1853
Eco88I	CYCGRG	1 cut(s)	2588
EcoNI	CCTNNNNNAGG	1 cut(s)	1709
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
EcoT14I	CCWWGG	2 cut(s)	571, 2445
EcoT22I	ATGCAT	1 cut(s)	2268
EcoT38I	GRGCYC	2 cut(s)	49, 62
ErhI	CCWWGG	2 cut(s)	571, 2445
Esp3I	CGTCTC	1 cut(s)	2812
FalI	AAGNNNNNCTT	8 cut(s)	573, 605, 1125, 1157, 2493, 2525, 2886, 2918
FaqI	GGGAC	3 cut(s)	232, 466, 1509
FauI	CCCGC	2 cut(s)	2119, 2783
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	2691
Fnu4HI	GCNGC	9 cut(s)	320, 384, 819, 988, 1007, 1157, 1864, 1899, 2814
FokI	GGATG	4 cut(s)	455, 683, 2678, 2683
FriOI	GRGCYC	2 cut(s)	49, 62
Fsp4HI	GCNGC	9 cut(s)	320, 384, 819, 988, 1007, 1157, 1864, 1899, 2814
GlaI	GCGC	1 cut(s)	2508
GluI	GCNGC	9 cut(s)	320, 384, 819, 988, 1007, 1157, 1864, 1899, 2814
GsaI	CCCAGC	1 cut(s)	1797
GsuI	CTGGAG	5 cut(s)	444, 1181, 1413, 2244, 2394
HaeII	RGCGCY	1 cut(s)	2510
HapII	CCGG	8 cut(s)	42, 76, 123, 127, 151, 400, 1625, 2645
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	2509
Hin1I	GRCGYC	2 cut(s)	72, 1214
Hin6I	GCGC	1 cut(s)	2507
HinP1I	GCGC	1 cut(s)	2507
HincII	GTYRAC	2 cut(s)	1212, 2525
HindII	GTYRAC	2 cut(s)	1212, 2525
HindIII	AAGCTT	3 cut(s)	8, 932, 2627
HinfI	GANTC	9 cut(s)	130, 170, 1353, 1438, 2150, 2345, 2407, 2621, 2965
HpaII	CCGG	8 cut(s)	42, 76, 123, 127, 151, 400, 1625, 2645
HphI	GGTGA	8 cut(s)	112, 448, 794, 919, 1631, 2267, 2318, 2369
Hpy166II	GTNNAC	7 cut(s)	270, 877, 1109, 1212, 2258, 2525, 2911
Hpy8I	GTNNAC	7 cut(s)	270, 877, 1109, 1212, 2258, 2525, 2911
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	8 cut(s)	358, 433, 1018, 2483, 2728, 2789, 2857, 2891
HpyCH4III	ACNGT	7 cut(s)	53, 301, 646, 1238, 2013, 2046, 2569
HpyCH4IV	ACGT	8 cut(s)	692, 873, 883, 1185, 1192, 1214, 1429, 1852
HpyF3I	CTNAG	9 cut(s)	222, 228, 234, 240, 246, 771, 1346, 2289, 2478
HpySE526I	ACGT	8 cut(s)	692, 873, 883, 1185, 1192, 1214, 1429, 1852
Hsp92I	GRCGYC	2 cut(s)	72, 1214
HspAI	GCGC	1 cut(s)	2507
KroI	GCCGGC	1 cut(s)	2644
KroNI	GCCGGC	1 cut(s)	2646
Ksp22I	TGATCA	1 cut(s)	2691
LguI	GCTCTTC	2 cut(s)	858, 1131
LmnI	GCTCC	9 cut(s)	44, 188, 418, 425, 815, 1642, 1762, 2225, 2504
Lsp1109I	GCAGC	5 cut(s)	805, 1018, 1143, 1910, 2825
LweI	GCATC	3 cut(s)	1875, 2020, 2403
MaeII	ACGT	8 cut(s)	692, 873, 883, 1185, 1192, 1214, 1429, 1852
MaeIII	GTNAC	7 cut(s)	96, 782, 1186, 1888, 2203, 2357, 2758
MfeI	CAATTG	2 cut(s)	1422, 2784
MflI	RGATCY	4 cut(s)	367, 634, 1971, 2775
MhlI	GDGCHC	2 cut(s)	49, 62
MlsI	TGGCCA	1 cut(s)	2573
MluNI	TGGCCA	1 cut(s)	2573
MlyI	GAGTC	1 cut(s)	2401
MmeI	TCCRAC	6 cut(s)	183, 1318, 1444, 1537, 1620, 2395
Mox20I	TGGCCA	1 cut(s)	2573
Mph1103I	ATGCAT	1 cut(s)	2268
MroNI	GCCGGC	1 cut(s)	2644
MroXI	GAANNNNTTC	2 cut(s)	1272, 2609
MscI	TGGCCA	1 cut(s)	2573
MslI	CAYNNNNRTG	5 cut(s)	780, 1617, 2637, 2699, 2714
Msp20I	TGGCCA	1 cut(s)	2573
MspA1I	CMGCKG	1 cut(s)	1156
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	8 cut(s)	42, 76, 123, 127, 151, 400, 1625, 2645
MspR9I	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
MunI	CAATTG	2 cut(s)	1422, 2784
Mva1269I	GAATGC	1 cut(s)	2266
MvaI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
NaeI	GCCGGC	1 cut(s)	2646
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	2445
NdeI	CATATG	1 cut(s)	418
NgoMIV	GCCGGC	1 cut(s)	2644
NheI	GCTAGC	1 cut(s)	379
NlaIV	GGNNCC	9 cut(s)	46, 60, 184, 369, 636, 1949, 2455, 2653, 2777
NmeAIII	GCCGAG	1 cut(s)	1955
NmuCI	GTSAC	5 cut(s)	782, 1186, 1888, 2203, 2357
NsiI	ATGCAT	1 cut(s)	2268
NspI	RCATGY	3 cut(s)	352, 1616, 1863
NspV	TTCGAA	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	1863
PaeR7I	CTCGAG	1 cut(s)	2588
PaqCI	CACCTGC	1 cut(s)	1928
PasI	CCCWGGG	1 cut(s)	1224
PciSI	GCTCTTC	2 cut(s)	858, 1131
PcsI	WCGNNNNNNNCGW	1 cut(s)	1299
PctI	GAATGC	1 cut(s)	2266
PdiI	GCCGGC	1 cut(s)	2646
PdmI	GAANNNNTTC	2 cut(s)	1272, 2609
PfeI	GAWTC	8 cut(s)	130, 170, 1353, 1438, 2150, 2345, 2621, 2965
PflMI	CCANNNNNTGG	4 cut(s)	55, 422, 2666, 2678
PfoI	TCCNGGA	1 cut(s)	1390
PkrI	GCNGC	9 cut(s)	321, 385, 820, 989, 1008, 1158, 1865, 1900, 2815
PleI	GAGTC	1 cut(s)	2401
PmaCI	CACGTG	2 cut(s)	1430, 1853
PmlI	CACGTG	2 cut(s)	1430, 1853
PpsI	GAGTC	1 cut(s)	2401
Ppu21I	YACGTR	3 cut(s)	1193, 1430, 1853
Psp1406I	AACGTT	1 cut(s)	883
Psp6I	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
PspCI	CACGTG	2 cut(s)	1430, 1853
PspFI	CCCAGC	1 cut(s)	1793
PspGI	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
PspN4I	GGNNCC	9 cut(s)	46, 60, 184, 369, 636, 1949, 2455, 2653, 2777
PspOMI	GGGCCC	1 cut(s)	58
PspPI	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2652, 2669
PstI	CTGCAG	1 cut(s)	2146
PstNI	CAGNNNCTG	5 cut(s)	455, 479, 1159, 2099, 2252
PsuI	RGATCY	4 cut(s)	367, 634, 1971, 2775
PvuII	CAGCTG	1 cut(s)	1156
RsaI	GTAC	5 cut(s)	547, 878, 1729, 2043, 2551
RsaNI	GTAC	5 cut(s)	546, 877, 1728, 2042, 2550
RseI	CAYNNNNRTG	5 cut(s)	780, 1617, 2637, 2699, 2714
SapI	GCTCTTC	2 cut(s)	858, 1131
SatI	GCNGC	9 cut(s)	320, 384, 819, 988, 1007, 1157, 1864, 1899, 2814
Sau96I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2652, 2669
SchI	GAGTC	1 cut(s)	2401
ScrFI	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
SduI	GDGCHC	2 cut(s)	49, 62
SfaNI	GCATC	3 cut(s)	1875, 2020, 2403
SfcI	CTRYAG	5 cut(s)	35, 261, 1151, 2025, 2142
Sfr274I	CTCGAG	1 cut(s)	2588
SfuI	TTCGAA	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	2588
SmiMI	CAYNNNNRTG	5 cut(s)	780, 1617, 2637, 2699, 2714
SmlI	CTYRAG	2 cut(s)	715, 2588
SmoI	CTYRAG	2 cut(s)	715, 2588
SpeI	ACTAGT	1 cut(s)	734
SphI	GCATGC	1 cut(s)	1863
SsiI	CCGC	7 cut(s)	320, 383, 988, 1863, 2126, 2387, 2790
SspI	AATATT	1 cut(s)	2583
StyD4I	CCNGG	6 cut(s)	150, 337, 448, 1223, 1390, 1525
StyI	CCWWGG	2 cut(s)	571, 2445
TaaI	ACNGT	7 cut(s)	53, 301, 646, 1238, 2013, 2046, 2569
TaiI	ACGT	8 cut(s)	695, 876, 886, 1188, 1195, 1217, 1432, 1855
TatI	WGTACW	3 cut(s)	876, 1727, 2041
TauI	GCSGC	4 cut(s)	322, 386, 990, 1866
TfiI	GAWTC	8 cut(s)	130, 170, 1353, 1438, 2150, 2345, 2621, 2965
TscAI	CASTG	3 cut(s)	851, 2572, 2959
TseFI	GTSAC	5 cut(s)	782, 1186, 1888, 2203, 2357
TseI	GCWGC	5 cut(s)	818, 1006, 1156, 1898, 2813
Tsp45I	GTSAC	5 cut(s)	782, 1186, 1888, 2203, 2357
TspGWI	ACGGA	2 cut(s)	1308, 2836
TspRI	CASTG	3 cut(s)	851, 2572, 2959
Van91I	CCANNNNNTGG	4 cut(s)	55, 422, 2666, 2678
Vha464I	CTTAAG	1 cut(s)	715
XagI	CCTNNNNNAGG	1 cut(s)	1709
XapI	RAATTY	4 cut(s)	1178, 1272, 1325, 2295
XbaI	TCTAGA	1 cut(s)	1675
XceI	RCATGY	3 cut(s)	352, 1616, 1863
XhoI	CTCGAG	1 cut(s)	2588
XmnI	GAANNNNTTC	2 cut(s)	1272, 2609
ZraI	GACGTC	1 cut(s)	1215
Zsp2I	ATGCAT	1 cut(s)	2268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.