Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

13566279 .. 13575462

Gene Structure 9184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGCTGAAACTCCTCTCTCCTTCTTCCCCGGCTGCCTCACCGTTTCTCCGAGCCGTTGGCTCTCTCACCGGCTTCACTCGCCGGAATCCTAACTTGGGCCGTCGAGCTTTTTTTTGCTCTGACGCTAAAAACGGTGATGGGGTGGTGGAAATCGAGTTCAAGGGGTTGGGAAATGAAGCAGAGGCTGAGTCCAAGTCGTCATCATCGTCATTTATCATACCCACAAATCTTAATCCTGAAGATTATGTAAAGGTTTTAGCATTGCCATTGCCGCATAGACCACTGTTTCCGGGTTTCTACATGCCAATATATGTGAAGGATCCTAAACTATTAGCAGCTCTACAGGAAAGTAGAAACCGGCAAGTTCCATATGCCGGTGCTTTCCTTGTCAAGGATGAACCAGGGACCGACCCTTGTTCTGAGATGGAGAGTAACATTCCTGATTTGAAAGGGAAAGAGTTGTTTGATCGTCTGCATGAAGTTGGTACGCTTGCCCAGATTTCAAGCATTCAAGGAGACCAAGTAGTCCTAATCGGCCATAGGCGACTTCATATTACAGAGATGGTTGATGAGGATCCCATGACTGTAAAAGTTGATCATCTCAAGGAGAAGCCATATGACAAGGATGATGATGTTATAAAGGCAACATCATATGAGGTTATATCAACTCTAAGAGATGTTCTGGAGACTAGTGTTCTTTGGAGAGATCATGCTCAAACATATACTCAGCATATAAGTGATTTTGATTTTACAAGGATAGCAGATTTTGGGGCTGCTATATCTGTTGCAAACAAATTGCAATGCCAAAAAGTACTTGAAGAGCTAGATGTGCATGAACGTTTAAAGCTCACACTAGAATTAGTGAAGAAAGAGATAGAGATCAGTAAGATTCAGGCATCTCTTATGAAAAAAATGGAAGAGAAAATGCTTTCTGAACAGCGTCGCAAATTGTTAAATGAGCAGCTTAAAGCAATAAAGAAGGAACTGGGATTAGAGGCTGATGATAGAACAGCGCTTTGTGAAAAGTTTAGGGAGAGGCTTGAACCAAATAGGGAAAAATGCCCACCTAATGTTTTGCAAGTCATAGAAGAAGAGCTTAGCAAAATGCAGCTGTTGGATGCCAGTTCAAGTGAATTTAATATAACACGTAATTATCTAGATTGGTTGATTTCACTTCCCTGGGGAAATTACAGTGATGAGAATTTTGATGTTCTTCGGGCGCAGAAGGTTCTCGATGAAGATCATTATGGATTAACTGAAGTAAAAGAAAGGATATTGGAATTTATTGCTGTTGGAAAACTCAGAGGAATGTCAGAAGGAAAAATCATCTGTCTCGCTGGCCCACCTGGAGTAGGAAAAACCAGCATTGGTCGTTCAATTGCACATGCCTTGAACCGTAATTTCTTTCGATTTTCTGTAGGAGGGTTAACTGACGCAGCTGAAATTAAGGGGCATCGTCGAACCTATGTTGGTGCCATGCCAGGAAAGATGGTACAATGCCTTAAAACTGCGGGAACAGCTAACCCTCTGGTTCTGATCGATGAGATTGACAAGTTGGGAAGGGGGCATGCTGGTCATCCGGCAAGTGCATTGTTGGAGCTTCTAGATCCAGAGCAAAATGCTAATTTTCTAGACCATTATCTTGATGTTCCAATTGACCTATCTAAGGTTCTGTTTGTTTGTACAGCAAATGTTGTGCACATGATTCCAACTCCTCTGTTGGATAGAATGGAGGTCGTTTCCATCGCTGGGTACATTACTGATGAGAAAATCCACATTGCTAGAGAGTATTTGGAGAAGACCACACGTGAAGCATGTGGCATTGAACCTGAACAGGTTGAGGTGACTGATGCAGCTCTTCTTGCACTCATTGAAAATTATTGCCGGGAAGCAGGTGTTAGGAACCTCCAGCAGCACATAGAAAGAATCTACCGCAAGGTTTGGGAAAAATATCAGAGTAGTATGATCATTATAAAATTGAAATTTCATCATGACAAAAAAAACACCTTATGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

672

Amino Acids

75.81

Weight (kDa)

5.89

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	85 - 290	2.4e-36	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	443 - 580	3.4e-24	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	443 - 537	4e-08	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	604 - 651	1.2e-16	Lon protease AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	638, 1973
AarI	CACCTGC	1 cut(s)	1883
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	1883
AccB1I	GGYRCC	1 cut(s)	1472
AciI	CCGC	3 cut(s)	272, 1511, 1933
AclI	AACGTT	1 cut(s)	838
AclWI	GGATC	5 cut(s)	314, 327, 569, 582, 1601
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	4 cut(s)	1133, 1201, 1280, 1982
AcuI	CTGAAG	2 cut(s)	258, 1278
AcvI	CACGTG	1 cut(s)	1808
AfaI	GTAC	5 cut(s)	487, 813, 1494, 1684, 1754
AfeI	AGCGCT	1 cut(s)	1014
AfiI	CCNNNNNNNGG	6 cut(s)	95, 374, 391, 1352, 1666, 1749
AflIII	ACRYGT	2 cut(s)	1145, 1805
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	4 cut(s)	400, 1178, 1345, 1480
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
Alw21I	GWGCWC	1 cut(s)	1701
Alw26I	GTCTC	3 cut(s)	510, 680, 1337
Alw44I	GTGCAC	1 cut(s)	1697
AlwI	GGATC	5 cut(s)	314, 327, 569, 582, 1601
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	1014
AoxI	GGCC	3 cut(s)	97, 535, 1339
ApaLI	GTGCAC	1 cut(s)	1697
ApeKI	GCWGC	8 cut(s)	32, 335, 773, 961, 1108, 1436, 1853, 1912
ApoI	RAATTY	4 cut(s)	1133, 1201, 1280, 1982
AspLEI	GCGC	2 cut(s)	1015, 1222
AspS9I	GGNCC	3 cut(s)	97, 405, 1340
AsuC2I	CCSGG	3 cut(s)	29, 291, 1886
AsuHPI	GGTGA	4 cut(s)	30, 58, 146, 1855
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	1701
BamHI	GGATCC	2 cut(s)	319, 574
BanI	GGYRCC	1 cut(s)	1472
BbrPI	CACGTG	1 cut(s)	1808
BbsI	GAAGAC	1 cut(s)	1805
Bbv12I	GWGCWC	1 cut(s)	1701
BbvI	GCAGC	8 cut(s)	19, 347, 760, 973, 1120, 1448, 1865, 1924
BccI	CCATC	5 cut(s)	131, 418, 556, 1483, 1751
BceAI	ACGGC	2 cut(s)	38, 84
BciT130I	CCWGG	4 cut(s)	402, 1180, 1347, 1482
BclI	TGATCA	2 cut(s)	595, 1965
BcnI	CCSGG	3 cut(s)	29, 291, 1886
BcoDI	GTCTC	3 cut(s)	510, 680, 1337
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	7 cut(s)	690, 824, 854, 1157, 1604, 1631, 1782
BfmI	CTRYAG	2 cut(s)	341, 1416
BfoI	RGCGCY	1 cut(s)	1016
BfuAI	ACCTGC	1 cut(s)	1883
BisI	GCNGC	9 cut(s)	33, 272, 336, 774, 962, 1109, 1437, 1854, 1913
BlpI	GCTNAGC	1 cut(s)	1097
BlsI	GCNGC	9 cut(s)	34, 273, 337, 775, 963, 1110, 1438, 1855, 1914
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	7 cut(s)	29, 291, 402, 1180, 1347, 1482, 1886
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	97, 405, 1340
BmiI	GGNNCC	5 cut(s)	321, 406, 576, 1474, 1904
BmrFI	CCNGG	7 cut(s)	29, 291, 402, 1180, 1347, 1482, 1886
BmrI	ACTGGG	1 cut(s)	995
BmsI	GCATC	4 cut(s)	905, 1108, 1462, 1840
BmuI	ACTGGG	1 cut(s)	995
BpiI	GAAGAC	1 cut(s)	1805
BpmI	CTGGAG	3 cut(s)	704, 1368, 1892
Bpu1102I	GCTNAGC	1 cut(s)	1097
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	3 cut(s)	29, 291, 1886
Bsa29I	ATCGAT	1 cut(s)	1539
BsaAI	YACGTR	2 cut(s)	1148, 1808
BsaBI	GATNNNNATC	3 cut(s)	573, 878, 1239
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	4 cut(s)	27, 401, 1178, 1179
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 507, 537
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 374, 391, 1352, 1666, 1749
Bse118I	RCCGGY	3 cut(s)	68, 357, 374
Bse1I	ACTGG	2 cut(s)	990, 1122
Bse3DI	GCAATG	4 cut(s)	260, 266, 806, 1776
Bse8I	GATNNNNATC	3 cut(s)	573, 878, 1239
BseBI	CCWGG	4 cut(s)	402, 1180, 1347, 1482
BseCI	ATCGAT	1 cut(s)	1539
BseDI	CCNNGG	4 cut(s)	27, 401, 1178, 1179
BseGI	GGATG	4 cut(s)	400, 631, 1123, 1576
BseJI	GATNNNNATC	3 cut(s)	573, 878, 1239
BseLI	CCNNNNNNNGG	6 cut(s)	95, 374, 391, 1352, 1666, 1749
BseMI	GCAATG	4 cut(s)	260, 266, 806, 1776
BseMII	CTCAG	4 cut(s)	177, 411, 740, 1315
BseNI	ACTGG	2 cut(s)	990, 1122
BseRI	GAGGAG	1 cut(s)	1704
BseSI	GKGCMC	1 cut(s)	1701
BseXI	GCAGC	8 cut(s)	19, 347, 760, 973, 1120, 1448, 1865, 1924
BseYI	CCCAGC	1 cut(s)	1748
BshFI	GGCC	3 cut(s)	99, 537, 1341
BshNI	GGYRCC	1 cut(s)	1472
BshVI	ATCGAT	1 cut(s)	1539
BsiHKAI	GWGCWC	1 cut(s)	1701
BsiSI	CCGG	8 cut(s)	29, 69, 82, 290, 358, 375, 1580, 1885
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	6 cut(s)	95, 374, 391, 1352, 1666, 1749
BsmAI	GTCTC	3 cut(s)	510, 680, 1337
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	99, 537, 1341
Bso31I	GGTCTC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	1701
Bsp1407I	TGTACA	1 cut(s)	1682
Bsp1720I	GCTNAGC	1 cut(s)	1097
BspACI	CCGC	3 cut(s)	272, 1511, 1933
BspANI	GGCC	3 cut(s)	99, 537, 1341
BspCNI	CTCAG	4 cut(s)	178, 412, 739, 1314
BspDI	ATCGAT	1 cut(s)	1539
BspHI	TCATGA	1 cut(s)	1990
BspLI	GGNNCC	5 cut(s)	321, 406, 576, 1474, 1904
BspMI	ACCTGC	1 cut(s)	1883
BspPI	GGATC	5 cut(s)	314, 327, 569, 582, 1601
BspQI	GCTCTTC	3 cut(s)	813, 1086, 1863
BspT107I	GGYRCC	1 cut(s)	1472
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	4 cut(s)	260, 266, 806, 1776
BsrFI	RCCGGY	3 cut(s)	68, 357, 374
BsrGI	TGTACA	1 cut(s)	1682
BsrI	ACTGG	2 cut(s)	990, 1122
BssAI	RCCGGY	3 cut(s)	68, 357, 374
BssECI	CCNNGG	4 cut(s)	27, 401, 1178, 1179
Bst2UI	CCWGG	4 cut(s)	402, 1180, 1347, 1482
Bst4CI	ACNGT	6 cut(s)	42, 134, 285, 586, 1193, 1397
Bst6I	CTCTTC	4 cut(s)	813, 912, 1086, 1863
BstAUI	TGTACA	1 cut(s)	1682
BstBAI	YACGTR	2 cut(s)	1148, 1808
BstC8I	GCNNGC	3 cut(s)	492, 1339, 1569
BstDEI	CTNAG	7 cut(s)	186, 420, 671, 726, 1097, 1301, 1665
BstENI	CCTNNNNNAGG	3 cut(s)	389, 1350, 1664
BstF5I	GGATG	4 cut(s)	400, 631, 1123, 1576
BstH2I	RGCGCY	1 cut(s)	1016
BstHHI	GCGC	2 cut(s)	1015, 1222
BstMAI	GTCTC	3 cut(s)	510, 680, 1337
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 271, 829, 1517, 1862
BstNI	CCWGG	4 cut(s)	402, 1180, 1347, 1482
BstNSI	RCATGY	4 cut(s)	304, 1388, 1571, 1818
BstSCI	CCNGG	7 cut(s)	27, 289, 400, 1178, 1345, 1480, 1884
BstSFI	CTRYAG	2 cut(s)	341, 1416
BstSLI	GKGCMC	1 cut(s)	1701
BstV1I	GCAGC	8 cut(s)	19, 347, 760, 973, 1120, 1448, 1865, 1924
BstV2I	GAAGAC	1 cut(s)	1805
BstX2I	RGATCY	3 cut(s)	319, 574, 1606
BstYI	RGATCY	3 cut(s)	319, 574, 1606
Bsu15I	ATCGAT	1 cut(s)	1539
BsuRI	GGCC	3 cut(s)	99, 537, 1341
BsuTUI	ATCGAT	1 cut(s)	1539
BtgZI	GCGATG	1 cut(s)	1729
BtsCI	GGATG	4 cut(s)	400, 631, 1123, 1576
BtsIMutI	CAGTG	2 cut(s)	281, 1198
BveI	ACCTGC	1 cut(s)	1883
Cac8I	GCNNGC	3 cut(s)	492, 1339, 1569
CaiI	CAGNNNCTG	1 cut(s)	185
CciI	TCATGA	1 cut(s)	1990
CfoI	GCGC	2 cut(s)	1015, 1222
Cfr10I	RCCGGY	3 cut(s)	68, 357, 374
Cfr13I	GGNCC	3 cut(s)	97, 405, 1340
ClaI	ATCGAT	1 cut(s)	1539
CseI	GACGC	3 cut(s)	131, 929, 1442
Csp6I	GTAC	5 cut(s)	486, 812, 1493, 1683, 1753
CviQI	GTAC	5 cut(s)	486, 812, 1493, 1683, 1753
DdeI	CTNAG	7 cut(s)	186, 420, 671, 726, 1097, 1301, 1665
DraI	TTTAAA	1 cut(s)	843
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	4 cut(s)	813, 912, 1086, 1863
EarI	CTCTTC	4 cut(s)	813, 912, 1086, 1863
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	405
Eco47III	AGCGCT	1 cut(s)	1014
Eco57I	CTGAAG	2 cut(s)	258, 1278
Eco72I	CACGTG	1 cut(s)	1808
EcoNI	CCTNNNNNAGG	3 cut(s)	389, 1350, 1664
EcoRII	CCWGG	4 cut(s)	400, 1178, 1345, 1480
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FaqI	GGGAC	1 cut(s)	418
FauI	CCCGC	1 cut(s)	1504
FauNDI	CATATG	3 cut(s)	370, 616, 652
FbaI	TGATCA	2 cut(s)	595, 1965
Fnu4HI	GCNGC	9 cut(s)	33, 272, 336, 774, 962, 1109, 1437, 1854, 1913
FokI	GGATG	4 cut(s)	407, 638, 1130, 1563
Fsp4HI	GCNGC	9 cut(s)	33, 272, 336, 774, 962, 1109, 1437, 1854, 1913
FspBI	CTAG	7 cut(s)	690, 824, 854, 1157, 1604, 1631, 1782
GlaI	GCGC	2 cut(s)	1014, 1221
GluI	GCNGC	9 cut(s)	33, 272, 336, 774, 962, 1109, 1437, 1854, 1913
GsaI	CCCAGC	1 cut(s)	1752
GsuI	CTGGAG	3 cut(s)	704, 1368, 1892
HaeII	RGCGCY	1 cut(s)	1016
HaeIII	GGCC	3 cut(s)	99, 537, 1341
HapII	CCGG	8 cut(s)	29, 69, 82, 290, 358, 375, 1580, 1885
HgaI	GACGC	3 cut(s)	131, 929, 1442
HhaI	GCGC	2 cut(s)	1015, 1222
Hin6I	GCGC	2 cut(s)	1013, 1220
HinP1I	GCGC	2 cut(s)	1013, 1220
HincII	GTYRAC	1 cut(s)	1428
HindII	GTYRAC	1 cut(s)	1428
HinfI	GANTC	5 cut(s)	85, 188, 889, 1705, 1926
HpaI	GTTAAC	1 cut(s)	1428
HpaII	CCGG	8 cut(s)	29, 69, 82, 290, 358, 375, 1580, 1885
HphI	GGTGA	4 cut(s)	30, 58, 146, 1855
Hpy166II	GTNNAC	2 cut(s)	1428, 1699
Hpy188I	TCNGA	8 cut(s)	50, 121, 421, 934, 1304, 1315, 1536, 1956
Hpy8I	GTNNAC	2 cut(s)	1428, 1699
Hpy99I	CGWCG	3 cut(s)	105, 945, 1461
HpyAV	CCTTC	6 cut(s)	30, 310, 973, 1219, 1310, 1554
HpyCH4III	ACNGT	6 cut(s)	42, 134, 285, 586, 1193, 1397
HpyCH4IV	ACGT	3 cut(s)	838, 1147, 1807
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 271, 829, 1517, 1862
HpyF3I	CTNAG	7 cut(s)	186, 420, 671, 726, 1097, 1301, 1665
HpySE526I	ACGT	3 cut(s)	838, 1147, 1807
HspAI	GCGC	2 cut(s)	1013, 1220
Ksp22I	TGATCA	2 cut(s)	595, 1965
KspAI	GTTAAC	1 cut(s)	1428
LguI	GCTCTTC	3 cut(s)	813, 1086, 1863
LmnI	GCTCC	1 cut(s)	1597
Lsp1109I	GCAGC	8 cut(s)	19, 347, 760, 973, 1120, 1448, 1865, 1924
LweI	GCATC	4 cut(s)	905, 1108, 1462, 1840
MaeI	CTAG	7 cut(s)	690, 824, 854, 1157, 1604, 1631, 1782
MaeII	ACGT	3 cut(s)	838, 1147, 1807
MaeIII	GTNAC	2 cut(s)	431, 1843
MfeI	CAATTG	2 cut(s)	1377, 1653
MflI	RGATCY	3 cut(s)	319, 574, 1606
MhlI	GDGCHC	1 cut(s)	1701
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	5 cut(s)	1095, 1273, 1575, 1701, 1733
MseI	TTAA	9 cut(s)	231, 842, 953, 966, 1137, 1253, 1427, 1446, 1503
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	2 cut(s)	1111, 1439
MspI	CCGG	8 cut(s)	29, 69, 82, 290, 358, 375, 1580, 1885
MspR9I	CCNGG	7 cut(s)	29, 291, 402, 1180, 1347, 1482, 1886
MunI	CAATTG	2 cut(s)	1377, 1653
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	4 cut(s)	402, 1180, 1347, 1482
MwoI	GCNNNNNNNGC	5 cut(s)	78, 271, 829, 1517, 1862
NciI	CCSGG	3 cut(s)	29, 291, 1886
NdeI	CATATG	3 cut(s)	370, 616, 652
NlaIV	GGNNCC	5 cut(s)	321, 406, 576, 1474, 1904
NmuCI	GTSAC	1 cut(s)	1843
NspI	RCATGY	4 cut(s)	304, 1388, 1571, 1818
PaeI	GCATGC	1 cut(s)	1571
PagI	TCATGA	1 cut(s)	1990
PaqCI	CACCTGC	1 cut(s)	1883
PasI	CCCWGGG	1 cut(s)	1179
PciSI	GCTCTTC	3 cut(s)	813, 1086, 1863
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	4 cut(s)	85, 889, 1705, 1926
PkrI	GCNGC	9 cut(s)	34, 273, 337, 775, 963, 1110, 1438, 1855, 1914
PleI	GAGTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	1808
PmlI	CACGTG	1 cut(s)	1808
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	2 cut(s)	1148, 1808
PsiI	TTATAA	2 cut(s)	638, 1973
Psp1406I	AACGTT	1 cut(s)	838
Psp6I	CCWGG	4 cut(s)	400, 1178, 1345, 1480
PspCI	CACGTG	1 cut(s)	1808
PspFI	CCCAGC	1 cut(s)	1748
PspGI	CCWGG	4 cut(s)	400, 1178, 1345, 1480
PspN4I	GGNNCC	5 cut(s)	321, 406, 576, 1474, 1904
PspPI	GGNCC	3 cut(s)	97, 405, 1340
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	3 cut(s)	319, 574, 1606
PvuII	CAGCTG	2 cut(s)	1111, 1439
RsaI	GTAC	5 cut(s)	487, 813, 1494, 1684, 1754
RsaNI	GTAC	5 cut(s)	486, 812, 1493, 1683, 1753
RseI	CAYNNNNRTG	1 cut(s)	735
SapI	GCTCTTC	3 cut(s)	813, 1086, 1863
SaqAI	TTAA	9 cut(s)	231, 842, 953, 966, 1137, 1253, 1427, 1446, 1503
SatI	GCNGC	9 cut(s)	33, 272, 336, 774, 962, 1109, 1437, 1854, 1913
Sau96I	GGNCC	3 cut(s)	97, 405, 1340
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	7 cut(s)	29, 291, 402, 1180, 1347, 1482, 1886
SduI	GDGCHC	1 cut(s)	1701
SfaNI	GCATC	4 cut(s)	905, 1108, 1462, 1840
SfcI	CTRYAG	2 cut(s)	341, 1416
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SpeI	ACTAGT	1 cut(s)	689
SphI	GCATGC	1 cut(s)	1571
SsiI	CCGC	3 cut(s)	272, 1511, 1933
SspMI	CTAG	7 cut(s)	690, 824, 854, 1157, 1604, 1631, 1782
StyD4I	CCNGG	7 cut(s)	27, 289, 400, 1178, 1345, 1480, 1884
TaaI	ACNGT	6 cut(s)	42, 134, 285, 586, 1193, 1397
TaiI	ACGT	3 cut(s)	841, 1150, 1810
TaqI	TCGA	6 cut(s)	103, 153, 1233, 1408, 1459, 1539
TaqII	GACCGA	1 cut(s)	422
TatI	WGTACW	2 cut(s)	811, 1682
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	4 cut(s)	85, 889, 1705, 1926
Tru1I	TTAA	9 cut(s)	231, 842, 953, 966, 1137, 1253, 1427, 1446, 1503
Tru9I	TTAA	9 cut(s)	231, 842, 953, 966, 1137, 1253, 1427, 1446, 1503
TscAI	CASTG	2 cut(s)	288, 1198
TseFI	GTSAC	1 cut(s)	1843
TseI	GCWGC	8 cut(s)	32, 335, 773, 961, 1108, 1436, 1853, 1912
Tsp45I	GTSAC	1 cut(s)	1843
TspDTI	ATGAA	8 cut(s)	189, 411, 492, 539, 849, 920, 1251, 1976
TspRI	CASTG	2 cut(s)	288, 1198
VneI	GTGCAC	1 cut(s)	1697
VpaK11BI	GGWCC	1 cut(s)	405
XagI	CCTNNNNNAGG	3 cut(s)	389, 1350, 1664
XapI	RAATTY	4 cut(s)	1133, 1201, 1280, 1982
XbaI	TCTAGA	3 cut(s)	1156, 1603, 1630
XceI	RCATGY	4 cut(s)	304, 1388, 1571, 1818
XspI	CTAG	7 cut(s)	690, 824, 854, 1157, 1604, 1631, 1782
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.