Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000488.1

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 7088

Gene Structure 7088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000488.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2799 bp

atgttgaagcttctctcttcttcctcctcgtgcctacaggccggagcccacagtctgggccctaaattgggcggccggcccgaaatgacttcgccgttactccgagttctgaactccctcaccggccggaatcggcccaatatggctcgccgggcgtttttttgctcggattcaagcgacggctccgatcaagttgttgagttggaggccaaggctgggactgaggctgaggctgaggctgaggctaaggcttcttcagctatagtgtccacaaaccctagaccagaagattatctaacggttttagctttgccattgccgcatagaccactctttccagggttctacatgccaatttatgtgaaggatccgaaattgctagcggctttacaggaaagccggaaacggcaagctccatatgctggagcttttctggtgaaggatgagccagggactgatccaagtttggtatcaggttctgatacagagaaaagcatatatgaattaaaagggaaagccttgtttaatcgattgcatgaagttggtacgcttgcccagatttctagtatccaaggcgaccaagtagtgcttattggtcataggcgacttcgaattacagagatggttgatgaggatcccctgactgtaaaaaataaaccatataacaaggatgatgatgtcataaaggctacatcatttgaggttatagcaaccttaagagatgttctgaagactagttctctttggagagatcatgttcaaacatacactcagcatataggtgactttaattttccgaggttagcagattttggagctgcaatatctggtgcaaacaaattgcagtgccagcaagtgcttgaagagctagacgtgtacaaacgtttaaatcttacactagaattggtgaagaaagagatggaaatcagcaagcttcaggaaactattgcaaaagcgattgaagagaagataagccgtgagcaacgccgctacttgttgaatgagcagcttaaagccataaagaaggaactgggattagagacagatgacaagacagcactttctgcaaagtttagggagaggctcgaaccaaacaaggataaatgtccacctcatgttttgcaagttatagaagaagagcttgcaaaactacagctgctggaggccagttcgagtgaatttaacgtgacacgtaattacctagattggttgacgtcaattccctggggaaattacagtaatgagaactttgatgttcttcgggctgaaaaaattcttgatgaagaccattacggattaaacgatgtaaaggaaaggatattggaatttattgctgttggaaaactcagaggaatctcacaaggaaaaatcatttgtctctctggccctcctggagttggcaaaaccagcattggtcgttcaattgcacgtgcattgaatcgcaatttctttcgattttctgttggagggttatctgatgtcgctgaaatcaagggacatcgccgaacctatatcggtgctatgccaggaaagatggttcaatgccttaaaaatgttggaacagctaaccctctagttctaattgatgagatcgacaagttgggaattggacatgctggtgatccggctagtgctttgttggagcttcttgatccagagcaaaatgctaattttctagatcattatcttgatgttccaatcgacctaacaaaggttctgtttgtttgtacagcaaatgttgtcgagaatataccagctcctctcttggatagaatggaggtcatttccatagctgggtatattactgatgagaaaatgcacattgctagagactatttggagaagacgacacgtgaagcatgcggcatcgaacctgaacaggtaccggttgaagtgaccaatgcagcacttcttgctctcgtagaaaattattgccgagaagcaggtgttcggaacctccaaaagcacatagaaaagatctaccgtaagatagctttgcaacttgttaggcaaggacagtcagatgaacctgtagatgctggcgaagtacagtctcccgtcagtaaaactgatctcccagatgaacctgcagttgttgcagatactgatgaagccaaagtagaagattttgctggcgttaaacagactgcagatgaatcagcagagggtaaagaccatgaacataatactgaaacctctgtgggaagtgtcactatcccagatgaaactggagcttctgaagttcaggttgcagatactggtgaacttatgcattcaaaggatacagaagaaactcagaaaattcaggagggtgaagccaaaaaaccagttgagaaagtgttggttaatgaatcaaacttgggtgactttgttggcaaaccagttttccatgcggatcgcatctatgaacagactccggttggagttgtcatgggtcttgcttggactgccatgggtggttccaccttgtatatagagaccactcaggtcgaggaaggagagggaaaaggagcgcttcatgctactggtcaacttggagatgttatgaaagaaagtacccaaattgctcacactgtggccagagcaatattgctcgagaaagagccagagaacactttctttgccgattccaagcttcatctccatgtgccagcaggggccacaccaaaggatgggccaagtgctggttgcaccatgatcacatccatgctgtccattgccatgaagaagcctgtcaagaaggatttagcaatgacaggggaagtaacactaactggcaggatccttccaattggcggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

933

Amino Acids

102.37

Weight (kDa)

5.29

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1934
AatII	GACGTC	1 cut(s)	1217
Acc36I	ACCTGC	2 cut(s)	1934, 2095
Acc65I	GGTACC	1 cut(s)	1882
AccB1I	GGYRCC	1 cut(s)	1882
AccB7I	CCANNNNNTGG	4 cut(s)	55, 422, 2672, 2684
AciI	CCGC	7 cut(s)	72, 320, 383, 988, 1863, 2393, 2796
AclI	AACGTT	1 cut(s)	883
AcoI	YGGCCR	3 cut(s)	73, 124, 2577
AcsI	RAATTY	4 cut(s)	1178, 1272, 1325, 2301
AcuI	CTGAAG	4 cut(s)	240, 749, 920, 2259
AcvI	CACGTG	2 cut(s)	1430, 1853
AcyI	GRCGYC	1 cut(s)	1214
AdeI	CACNNNGTG	1 cut(s)	2575
AfaI	GTAC	6 cut(s)	547, 878, 1729, 1884, 2049, 2557
AfeI	AGCGCT	1 cut(s)	2514
AflII	CTTAAG	1 cut(s)	715
AflIII	ACRYGT	3 cut(s)	873, 1190, 1850
AgeI	ACCGGT	1 cut(s)	1885
AhlI	ACTAGT	1 cut(s)	734
AjiI	CACGTC	1 cut(s)	874
AjnI	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
AloI	GAACNNNNNNTCC	2 cut(s)	1521, 1553
Alw26I	GTCTC	5 cut(s)	1034, 1382, 1824, 2058, 2471
AlwNI	CAGNNNCTG	5 cut(s)	455, 479, 1159, 2105, 2258
Ama87I	CYCGRG	1 cut(s)	2594
Aor51HI	AGCGCT	1 cut(s)	2514
ApaI	GGGCCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	818, 1006, 1156, 1904
ApoI	RAATTY	4 cut(s)	1178, 1272, 1325, 2301
AsiGI	ACCGGT	1 cut(s)	1885
Asp700I	GAANNNNTTC	2 cut(s)	1272, 2615
Asp718I	GGTACC	1 cut(s)	1882
AspLEI	GCGC	1 cut(s)	2515
AspS9I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2658, 2675
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	8 cut(s)	112, 448, 794, 919, 1631, 2273, 2324, 2375
AsuII	TTCGAA	1 cut(s)	610
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	2594
BaeGI	GKGCMC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	2579
BamHI	GGATCC	3 cut(s)	367, 634, 2781
BanI	GGYRCC	1 cut(s)	1882
BanII	GRGCYC	2 cut(s)	49, 62
BauI	CACGAG	1 cut(s)	28
BbrPI	CACGTG	2 cut(s)	1430, 1853
BbsI	GAAGAC	3 cut(s)	737, 1290, 1850
BbvCI	CCTCAGC	3 cut(s)	228, 234, 240
BbvI	GCAGC	4 cut(s)	805, 1018, 1143, 1916
BccI	CCATC	4 cut(s)	616, 913, 1528, 2666
BceAI	ACGGC	4 cut(s)	79, 196, 422, 960
BciT130I	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
BciVI	GTATCC	2 cut(s)	578, 2275
BclI	TGATCA	1 cut(s)	2697
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	5 cut(s)	1034, 1382, 1824, 2058, 2471
BcuI	ACTAGT	1 cut(s)	734
BfmI	CTRYAG	6 cut(s)	35, 261, 1151, 2031, 2088, 2148
BfoI	RGCGCY	1 cut(s)	2516
BfrI	CTTAAG	1 cut(s)	715
BfuAI	ACCTGC	2 cut(s)	1934, 2095
BfuI	GTATCC	2 cut(s)	578, 2275
BglII	AGATCT	1 cut(s)	1977
BisI	GCNGC	9 cut(s)	73, 320, 384, 819, 988, 1007, 1157, 1864, 1905
BlsI	GCNGC	9 cut(s)	74, 321, 385, 820, 989, 1008, 1158, 1865, 1906
Bme1390I	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
BmeT110I	CYCGRG	1 cut(s)	2594
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2658, 2675
BmrFI	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
BmrI	ACTGGG	1 cut(s)	1040
BmsI	GCATC	3 cut(s)	1875, 2026, 2409
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	1040
BpiI	GAAGAC	3 cut(s)	737, 1290, 1850
BpmI	CTGGAG	4 cut(s)	444, 1181, 1413, 2250
Bpu10I	CCTNAGC	4 cut(s)	228, 234, 240, 246
Bpu14I	TTCGAA	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	529
BsaAI	YACGTR	3 cut(s)	1193, 1430, 1853
BsaBI	GATNNNNATC	3 cut(s)	633, 923, 1683
BsaHI	GRCGYC	1 cut(s)	1214
BsaI	GGTCTC	1 cut(s)	2471
BsaJI	CCNNGG	8 cut(s)	210, 338, 449, 571, 797, 1223, 1224, 2451
BsaWI	WCCGGW	2 cut(s)	1885, 2416
Bse118I	RCCGGY	3 cut(s)	75, 122, 1885
Bse1I	ACTGG	8 cut(s)	1035, 1167, 2233, 2263, 2327, 2381, 2530, 2779
Bse3DI	GCAATG	4 cut(s)	314, 1821, 2715, 2757
Bse8I	GATNNNNATC	3 cut(s)	633, 923, 1683
BseBI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
BseCI	ATCGAT	1 cut(s)	529
BseDI	CCNNGG	8 cut(s)	210, 338, 449, 571, 797, 1223, 1224, 2451
BseGI	GGATG	4 cut(s)	448, 676, 2677, 2702
BseJI	GATNNNNATC	3 cut(s)	633, 923, 1683
BseMI	GCAATG	4 cut(s)	314, 1821, 2715, 2757
BseMII	CTCAG	8 cut(s)	213, 219, 225, 231, 785, 1360, 2309, 2498
BseNI	ACTGG	8 cut(s)	1035, 1167, 2233, 2263, 2327, 2381, 2530, 2779
BseRI	GAGGAG	2 cut(s)	16, 1749
BseSI	GKGCMC	1 cut(s)	62
BseX3I	CGGCCG	2 cut(s)	73, 124
BseXI	GCAGC	4 cut(s)	805, 1018, 1143, 1916
BseYI	CCCAGC	2 cut(s)	215, 1793
Bsh1285I	CGRYCG	2 cut(s)	76, 127
BshNI	GGYRCC	1 cut(s)	1882
BshTI	ACCGGT	1 cut(s)	1885
BshVI	ATCGAT	1 cut(s)	529
BsiEI	CGRYCG	2 cut(s)	76, 127
BsiHKCI	CYCGRG	1 cut(s)	2594
BsiSI	CCGG	9 cut(s)	42, 76, 123, 127, 151, 400, 1625, 1886, 2417
BslFI	GGGAC	3 cut(s)	232, 466, 1509
BsmAI	GTCTC	5 cut(s)	1034, 1382, 1824, 2058, 2471
BsmFI	GGGAC	3 cut(s)	232, 466, 1509
BsmI	GAATGC	1 cut(s)	2272
Bso31I	GGTCTC	1 cut(s)	2471
BsoBI	CYCGRG	1 cut(s)	2594
Bsp119I	TTCGAA	1 cut(s)	610
Bsp120I	GGGCCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	49, 62
Bsp1407I	TGTACA	2 cut(s)	876, 1727
Bsp19I	CCATGG	1 cut(s)	2451
BspACI	CCGC	7 cut(s)	72, 320, 383, 988, 1863, 2393, 2796
BspCNI	CTCAG	8 cut(s)	214, 220, 226, 232, 784, 1359, 2308, 2497
BspDI	ATCGAT	1 cut(s)	529
BspMAI	CTGCAG	2 cut(s)	2092, 2152
BspMI	ACCTGC	2 cut(s)	1934, 2095
BspOI	GCTAGC	1 cut(s)	383
BspQI	GCTCTTC	2 cut(s)	858, 1131
BspT104I	TTCGAA	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	1882
BspTI	CTTAAG	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	2471
BsrDI	GCAATG	4 cut(s)	314, 1821, 2715, 2757
BsrFI	RCCGGY	3 cut(s)	75, 122, 1885
BsrGI	TGTACA	2 cut(s)	876, 1727
BsrI	ACTGG	8 cut(s)	1035, 1167, 2233, 2263, 2327, 2381, 2530, 2779
BssAI	RCCGGY	3 cut(s)	75, 122, 1885
BssECI	CCNNGG	8 cut(s)	210, 338, 449, 571, 797, 1223, 1224, 2451
BssNI	GRCGYC	1 cut(s)	1214
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	3 cut(s)	210, 571, 2451
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
Bst4CI	ACNGT	8 cut(s)	53, 301, 646, 1238, 1985, 2019, 2052, 2575
Bst6I	CTCTTC	4 cut(s)	22, 858, 957, 1131
BstACI	GRCGYC	1 cut(s)	1214
BstAFI	CTTAAG	1 cut(s)	715
BstAPI	GCANNNNNTGC	3 cut(s)	1064, 1913, 2096
BstAUI	TGTACA	2 cut(s)	876, 1727
BstBAI	YACGTR	3 cut(s)	1193, 1430, 1853
BstBI	TTCGAA	1 cut(s)	610
BstDEI	CTNAG	9 cut(s)	222, 228, 234, 240, 246, 771, 1346, 2295, 2484
BstDSI	CCRYGG	1 cut(s)	2451
BstENI	CCTNNNNNAGG	1 cut(s)	1709
BstF5I	GGATG	4 cut(s)	448, 676, 2677, 2702
BstH2I	RGCGCY	1 cut(s)	2516
BstHHI	GCGC	1 cut(s)	2515
BstMAI	GTCTC	5 cut(s)	1034, 1382, 1824, 2058, 2471
BstMCI	CGRYCG	2 cut(s)	76, 127
BstNI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
BstNSI	RCATGY	3 cut(s)	352, 1616, 1863
BstSCI	CCNGG	6 cut(s)	150, 337, 448, 1223, 1390, 1525
BstSFI	CTRYAG	6 cut(s)	35, 261, 1151, 2031, 2088, 2148
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	805, 1018, 1143, 1916
BstV2I	GAAGAC	3 cut(s)	737, 1290, 1850
BstX2I	RGATCY	4 cut(s)	367, 634, 1977, 2781
BstYI	RGATCY	4 cut(s)	367, 634, 1977, 2781
BstZI	CGGCCG	2 cut(s)	73, 124
Bsu15I	ATCGAT	1 cut(s)	529
BsuI	GTATCC	2 cut(s)	578, 2275
BsuTUI	ATCGAT	1 cut(s)	529
BtgI	CCRYGG	1 cut(s)	2451
BtgZI	GCGATG	1 cut(s)	1484
BtrI	CACGTC	1 cut(s)	874
BtsCI	GGATG	4 cut(s)	448, 676, 2677, 2702
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	2 cut(s)	851, 2571
BveI	ACCTGC	2 cut(s)	1934, 2095
CaiI	CAGNNNCTG	5 cut(s)	455, 479, 1159, 2105, 2258
CfoI	GCGC	1 cut(s)	2515
Cfr10I	RCCGGY	3 cut(s)	75, 122, 1885
Cfr13I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2658, 2675
ClaI	ATCGAT	1 cut(s)	529
Csp6I	GTAC	6 cut(s)	546, 877, 1728, 1883, 2048, 2556
CspAI	ACCGGT	1 cut(s)	1885
CviQI	GTAC	6 cut(s)	546, 877, 1728, 1883, 2048, 2556
DdeI	CTNAG	9 cut(s)	222, 228, 234, 240, 246, 771, 1346, 2295, 2484
DraI	TTTAAA	1 cut(s)	888
DraIII	CACNNNGTG	1 cut(s)	2575
EaeI	YGGCCR	3 cut(s)	73, 124, 2577
EagI	CGGCCG	2 cut(s)	73, 124
Eam1104I	CTCTTC	4 cut(s)	22, 858, 957, 1131
EarI	CTCTTC	4 cut(s)	22, 858, 957, 1131
EclXI	CGGCCG	2 cut(s)	73, 124
Eco130I	CCWWGG	3 cut(s)	210, 571, 2451
Eco24I	GRGCYC	2 cut(s)	49, 62
Eco31I	GGTCTC	1 cut(s)	2471
Eco47III	AGCGCT	1 cut(s)	2514
Eco52I	CGGCCG	2 cut(s)	73, 124
Eco57I	CTGAAG	4 cut(s)	240, 749, 920, 2259
Eco72I	CACGTG	2 cut(s)	1430, 1853
Eco88I	CYCGRG	1 cut(s)	2594
EcoNI	CCTNNNNNAGG	1 cut(s)	1709
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
EcoT14I	CCWWGG	3 cut(s)	210, 571, 2451
EcoT22I	ATGCAT	1 cut(s)	2274
EcoT38I	GRGCYC	2 cut(s)	49, 62
ErhI	CCWWGG	3 cut(s)	210, 571, 2451
FalI	AAGNNNNNCTT	6 cut(s)	573, 605, 1125, 1157, 2499, 2531
FaqI	GGGAC	3 cut(s)	232, 466, 1509
FauI	CCCGC	1 cut(s)	2789
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	2697
Fnu4HI	GCNGC	9 cut(s)	73, 320, 384, 819, 988, 1007, 1157, 1864, 1905
FokI	GGATG	4 cut(s)	455, 683, 2684, 2689
FriOI	GRGCYC	2 cut(s)	49, 62
FseI	GGCCGGCC	1 cut(s)	79
Fsp4HI	GCNGC	9 cut(s)	73, 320, 384, 819, 988, 1007, 1157, 1864, 1905
GlaI	GCGC	1 cut(s)	2514
GluI	GCNGC	9 cut(s)	73, 320, 384, 819, 988, 1007, 1157, 1864, 1905
GsaI	CCCAGC	2 cut(s)	219, 1797
GsuI	CTGGAG	4 cut(s)	444, 1181, 1413, 2250
HaeII	RGCGCY	1 cut(s)	2516
HapII	CCGG	9 cut(s)	42, 76, 123, 127, 151, 400, 1625, 1886, 2417
HhaI	GCGC	1 cut(s)	2515
Hin1I	GRCGYC	1 cut(s)	1214
Hin6I	GCGC	1 cut(s)	2513
HinP1I	GCGC	1 cut(s)	2513
HincII	GTYRAC	2 cut(s)	1212, 2531
HindII	GTYRAC	2 cut(s)	1212, 2531
HindIII	AAGCTT	3 cut(s)	8, 932, 2633
HinfI	GANTC	8 cut(s)	130, 170, 1353, 1438, 2156, 2351, 2413, 2627
HpaII	CCGG	9 cut(s)	42, 76, 123, 127, 151, 400, 1625, 1886, 2417
HphI	GGTGA	8 cut(s)	112, 448, 794, 919, 1631, 2273, 2324, 2375
Hpy166II	GTNNAC	6 cut(s)	270, 877, 1109, 1212, 2264, 2531
Hpy8I	GTNNAC	6 cut(s)	270, 877, 1109, 1212, 2264, 2531
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	6 cut(s)	358, 433, 1018, 2489, 2734, 2795
HpyCH4III	ACNGT	8 cut(s)	53, 301, 646, 1238, 1985, 2019, 2052, 2575
HpyCH4IV	ACGT	7 cut(s)	873, 883, 1185, 1192, 1214, 1429, 1852
HpyF3I	CTNAG	9 cut(s)	222, 228, 234, 240, 246, 771, 1346, 2295, 2484
HpySE526I	ACGT	7 cut(s)	873, 883, 1185, 1192, 1214, 1429, 1852
Hsp92I	GRCGYC	1 cut(s)	1214
HspAI	GCGC	1 cut(s)	2513
KpnI	GGTACC	1 cut(s)	1886
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	2697
LguI	GCTCTTC	2 cut(s)	858, 1131
LmnI	GCTCC	9 cut(s)	44, 188, 418, 425, 815, 1642, 1762, 2231, 2510
Lsp1109I	GCAGC	4 cut(s)	805, 1018, 1143, 1916
LweI	GCATC	3 cut(s)	1875, 2026, 2409
MaeII	ACGT	7 cut(s)	873, 883, 1185, 1192, 1214, 1429, 1852
MaeIII	GTNAC	7 cut(s)	96, 782, 1186, 1894, 2209, 2363, 2764
MfeI	CAATTG	2 cut(s)	1422, 2790
MflI	RGATCY	4 cut(s)	367, 634, 1977, 2781
MhlI	GDGCHC	2 cut(s)	49, 62
MlsI	TGGCCA	1 cut(s)	2579
MluNI	TGGCCA	1 cut(s)	2579
MlyI	GAGTC	1 cut(s)	2407
MmeI	TCCRAC	6 cut(s)	183, 1318, 1444, 1537, 1620, 2401
Mox20I	TGGCCA	1 cut(s)	2579
Mph1103I	ATGCAT	1 cut(s)	2274
MroNI	GCCGGC	1 cut(s)	75
MroXI	GAANNNNTTC	2 cut(s)	1272, 2615
MscI	TGGCCA	1 cut(s)	2579
MslI	CAYNNNNRTG	5 cut(s)	780, 1617, 2643, 2705, 2720
Msp20I	TGGCCA	1 cut(s)	2579
MspA1I	CMGCKG	1 cut(s)	1156
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	9 cut(s)	42, 76, 123, 127, 151, 400, 1625, 1886, 2417
MspR9I	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
MunI	CAATTG	2 cut(s)	1422, 2790
Mva1269I	GAATGC	1 cut(s)	2272
MvaI	CCWGG	5 cut(s)	339, 450, 1225, 1392, 1527
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	2451
NdeI	CATATG	1 cut(s)	418
NgoMIV	GCCGGC	1 cut(s)	75
NheI	GCTAGC	1 cut(s)	379
NmeAIII	GCCGAG	1 cut(s)	1961
NmuCI	GTSAC	5 cut(s)	782, 1186, 1894, 2209, 2363
NsiI	ATGCAT	1 cut(s)	2274
NspI	RCATGY	3 cut(s)	352, 1616, 1863
NspV	TTCGAA	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	1863
PaeR7I	CTCGAG	1 cut(s)	2594
PaqCI	CACCTGC	1 cut(s)	1934
PasI	CCCWGGG	1 cut(s)	1224
PciSI	GCTCTTC	2 cut(s)	858, 1131
PcsI	WCGNNNNNNNCGW	1 cut(s)	1299
PctI	GAATGC	1 cut(s)	2272
PdiI	GCCGGC	1 cut(s)	77
PdmI	GAANNNNTTC	2 cut(s)	1272, 2615
PfeI	GAWTC	7 cut(s)	130, 170, 1353, 1438, 2156, 2351, 2627
PflMI	CCANNNNNTGG	4 cut(s)	55, 422, 2672, 2684
PfoI	TCCNGGA	1 cut(s)	1390
PinAI	ACCGGT	1 cut(s)	1885
PkrI	GCNGC	9 cut(s)	74, 321, 385, 820, 989, 1008, 1158, 1865, 1906
PleI	GAGTC	1 cut(s)	2407
PmaCI	CACGTG	2 cut(s)	1430, 1853
PmlI	CACGTG	2 cut(s)	1430, 1853
PpsI	GAGTC	1 cut(s)	2407
Ppu21I	YACGTR	3 cut(s)	1193, 1430, 1853
Psp1406I	AACGTT	1 cut(s)	883
Psp6I	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
PspCI	CACGTG	2 cut(s)	1430, 1853
PspFI	CCCAGC	2 cut(s)	215, 1793
PspGI	CCWGG	5 cut(s)	337, 448, 1223, 1390, 1525
PspOMI	GGGCCC	1 cut(s)	58
PspPI	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2658, 2675
PstI	CTGCAG	2 cut(s)	2092, 2152
PstNI	CAGNNNCTG	5 cut(s)	455, 479, 1159, 2105, 2258
PsuI	RGATCY	4 cut(s)	367, 634, 1977, 2781
PvuII	CAGCTG	1 cut(s)	1156
RigI	GGCCGGCC	1 cut(s)	79
RsaI	GTAC	6 cut(s)	547, 878, 1729, 1884, 2049, 2557
RsaNI	GTAC	6 cut(s)	546, 877, 1728, 1883, 2048, 2556
RseI	CAYNNNNRTG	5 cut(s)	780, 1617, 2643, 2705, 2720
SapI	GCTCTTC	2 cut(s)	858, 1131
SatI	GCNGC	9 cut(s)	73, 320, 384, 819, 988, 1007, 1157, 1864, 1905
Sau96I	GGNCC	7 cut(s)	58, 59, 78, 135, 1385, 2658, 2675
SchI	GAGTC	1 cut(s)	2407
ScrFI	CCNGG	6 cut(s)	152, 339, 450, 1225, 1392, 1527
SduI	GDGCHC	2 cut(s)	49, 62
SfaNI	GCATC	3 cut(s)	1875, 2026, 2409
SfcI	CTRYAG	6 cut(s)	35, 261, 1151, 2031, 2088, 2148
Sfr274I	CTCGAG	1 cut(s)	2594
SfuI	TTCGAA	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	2594
SmiMI	CAYNNNNRTG	5 cut(s)	780, 1617, 2643, 2705, 2720
SmlI	CTYRAG	2 cut(s)	715, 2594
SmoI	CTYRAG	2 cut(s)	715, 2594
SpeI	ACTAGT	1 cut(s)	734
SphI	GCATGC	1 cut(s)	1863
SsiI	CCGC	7 cut(s)	72, 320, 383, 988, 1863, 2393, 2796
SspI	AATATT	1 cut(s)	2589
StyD4I	CCNGG	6 cut(s)	150, 337, 448, 1223, 1390, 1525
StyI	CCWWGG	3 cut(s)	210, 571, 2451
TaaI	ACNGT	8 cut(s)	53, 301, 646, 1238, 1985, 2019, 2052, 2575
TaiI	ACGT	7 cut(s)	876, 886, 1188, 1195, 1217, 1432, 1855
TatI	WGTACW	3 cut(s)	876, 1727, 2047
TauI	GCSGC	5 cut(s)	75, 322, 386, 990, 1866
TfiI	GAWTC	7 cut(s)	130, 170, 1353, 1438, 2156, 2351, 2627
TscAI	CASTG	2 cut(s)	851, 2578
TseFI	GTSAC	5 cut(s)	782, 1186, 1894, 2209, 2363
TseI	GCWGC	4 cut(s)	818, 1006, 1156, 1904
Tsp45I	GTSAC	5 cut(s)	782, 1186, 1894, 2209, 2363
TspGWI	ACGGA	1 cut(s)	1308
TspRI	CASTG	2 cut(s)	851, 2578
Van91I	CCANNNNNTGG	4 cut(s)	55, 422, 2672, 2684
Vha464I	CTTAAG	1 cut(s)	715
XagI	CCTNNNNNAGG	1 cut(s)	1709
XapI	RAATTY	4 cut(s)	1178, 1272, 1325, 2301
XbaI	TCTAGA	1 cut(s)	1675
XceI	RCATGY	3 cut(s)	352, 1616, 1863
XhoI	CTCGAG	1 cut(s)	2594
XmnI	GAANNNNTTC	2 cut(s)	1272, 2615
ZraI	GACGTC	1 cut(s)	1215
Zsp2I	ATGCAT	1 cut(s)	2274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.