Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

8764640 .. 8766403

Gene Structure 1764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGGTGGAGCAAGTCCTTCACATGAATGGCGGATGTGGGAGAACAAGCTATTCAAACAACTCGCTTCTTCAAAGAGCAGTGATTTCATGGGTGAAGCCCATTTTAGATGCAAGCATAGAGAAGCTGTGTAGCTCCAACCTCCCTGCAGAGTGTTTGAGGATTGGTGACTTGGGATGTTCTTCAGGACCAAACACCCTTTTAGTCGTATCAAATGTCATCGACATGATCCAGAATACATGTCAAAAATTGAACCGTCGACCTCCATCGCTCCAAGTATTTTTGAATGATCTTCCCCAAAACGACTTTAACACAGTTTTCAAATCATTGCCAAGCTTCTACAAAAAACTCGAAGAAAGGAAGTGGCTGGAGCCATGCTTCATTGCAGGAATGCCCGGTTCTTTCTATGGCAGGATCTTTCCTAAGAATTCTATCAACTTTTTCCACTCTTCGTACTCTCTGCAATGGATCTCTAAGGTTCCAAAAGGTTTGGTAACAAAAGGAGGACTCAACGAGGGAAACATATGCACAGCCAAGACAAGCCCACCTTCTGTGTTTAATGAATACTTTGGGCAATTTAAAAACGACTTCACAGTGTTTCTAAGGTCTCGTGCAGAAGAGTTGGTCCCTCAGGGTAGAATGGTCCTCACAATCAGGGGGAGCATAAACAGTCATGAACCCCTCTCTATATTAGAATTTCTTGGATTGAAAATCAATGATATGGTTTTAGAGGGTTTGATTGAAAAGAAAAACTTAGACTACTTCAATATTCCATACTATGAACCTACAATGGAGGAACTGATGGAGCTGATCGAGACAGAAGGATCCTTTAGGTTGCAGGACCATCAAGTTTTTAAACATGATTGGGACTCTTTTATAAAGGAAGCTGATAGTGGTCTCAGTAAGAAAGCAAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

306

Amino Acids

34.72

Weight (kDa)

6.54

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	40 - 295	1.8e-100	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	5 cut(s)	223, 422, 476, 819, 832
AcsI	RAATTY	2 cut(s)	427, 695
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	8 cut(s)	57, 74, 253, 286, 322, 709, 743, 766
AluBI	AGCT	6 cut(s)	51, 127, 135, 336, 808, 887
AluI	AGCT	6 cut(s)	51, 127, 135, 336, 808, 887
Alw26I	GTCTC	3 cut(s)	612, 809, 902
AlwI	GGATC	5 cut(s)	223, 422, 476, 819, 832
ApoI	RAATTY	2 cut(s)	427, 695
AspS9I	GGNCC	4 cut(s)	188, 625, 643, 841
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	106, 179
AvaII	GGWCC	4 cut(s)	188, 625, 643, 841
AxyI	CCTNAGG	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	824
BauI	CACGAG	1 cut(s)	609
BccI	CCATC	3 cut(s)	274, 796, 852
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	612, 809, 902
BfmI	CTRYAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	4 cut(s)	188, 625, 643, 841
BmgT120I	GGNCC	4 cut(s)	188, 625, 643, 841
BmiI	GGNNCC	4 cut(s)	372, 480, 627, 826
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	396
BsaI	GGTCTC	2 cut(s)	612, 902
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	3 cut(s)	326, 381, 470
BseGI	GGATG	2 cut(s)	41, 182
BseMI	GCAATG	3 cut(s)	326, 381, 470
BseMII	CTCAG	2 cut(s)	644, 913
BsgI	GTGCAG	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	611, 881
BsmAI	GTCTC	3 cut(s)	612, 809, 902
BsmFI	GGGAC	2 cut(s)	611, 881
BsmI	GAATGC	1 cut(s)	396
Bso31I	GGTCTC	2 cut(s)	612, 902
Bsp143I	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	643, 912
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	4 cut(s)	372, 480, 627, 826
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	5 cut(s)	223, 422, 476, 819, 832
BspTNI	GGTCTC	2 cut(s)	612, 902
BsrDI	GCAATG	3 cut(s)	326, 381, 470
BssMI	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst4CI	ACNGT	4 cut(s)	257, 316, 595, 671
Bst6I	CTCTTC	2 cut(s)	454, 612
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	6 cut(s)	423, 474, 602, 630, 754, 899
BstF5I	GGATG	2 cut(s)	41, 182
BstKTI	GATC	6 cut(s)	231, 292, 417, 471, 813, 827
BstMAI	GTCTC	3 cut(s)	612, 809, 902
BstMBI	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	147
BstX2I	RGATCY	3 cut(s)	414, 468, 824
BstYI	RGATCY	3 cut(s)	414, 468, 824
Bsu36I	CCTNAGG	1 cut(s)	630
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	41, 182
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 600
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	673
Cfr13I	GGNCC	4 cut(s)	188, 625, 643, 841
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	7 cut(s)	25, 90, 226, 240, 375, 674, 860
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	6 cut(s)	423, 474, 602, 630, 754, 899
DpnI	GATC	6 cut(s)	230, 291, 416, 470, 812, 826
DpnII	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
DraI	TTTAAA	2 cut(s)	580, 856
Eam1104I	CTCTTC	2 cut(s)	454, 612
EarI	CTCTTC	2 cut(s)	454, 612
EciI	GGCGGA	1 cut(s)	48
Eco31I	GGTCTC	2 cut(s)	612, 902
Eco47I	GGWCC	4 cut(s)	188, 625, 643, 841
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	427
FaeI	CATG	7 cut(s)	28, 93, 229, 243, 378, 677, 863
FalI	AAGNNNNNCTT	4 cut(s)	532, 564, 737, 769
FaqI	GGGAC	2 cut(s)	611, 881
FatI	CATG	7 cut(s)	24, 89, 225, 239, 374, 673, 859
FauNDI	CATATG	1 cut(s)	524
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	2 cut(s)	48, 189
GsuI	CTGGAG	1 cut(s)	389
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	7 cut(s)	28, 93, 229, 243, 378, 677, 863
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	2 cut(s)	507, 869
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	106, 179
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188III	TCNNGA	4 cut(s)	186, 232, 674, 814
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	29, 558, 815
HpyCH4III	ACNGT	4 cut(s)	257, 316, 595, 671
HpyCH4V	TGCA	7 cut(s)	113, 149, 386, 463, 528, 614, 838
HpyF3I	CTNAG	6 cut(s)	423, 474, 602, 630, 754, 899
Hsp92II	CATG	7 cut(s)	28, 93, 229, 243, 378, 677, 863
Kzo9I	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
LmnI	GCTCC	6 cut(s)	10, 140, 276, 370, 660, 805
LweI	GCATC	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	167, 493
MalI	GATC	6 cut(s)	230, 291, 416, 470, 812, 826
MboI	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
MboII	GAAGA	6 cut(s)	62, 174, 284, 365, 441, 629
MflI	RGATCY	3 cut(s)	414, 468, 824
MluCI	AATT	4 cut(s)	248, 427, 575, 695
MlyI	GAGTC	2 cut(s)	501, 863
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	4 cut(s)	309, 558, 579, 855
MslI	CAYNNNNRTG	2 cut(s)	27, 224
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
NlaIII	CATG	7 cut(s)	28, 93, 229, 243, 378, 677, 863
NlaIV	GGNNCC	4 cut(s)	372, 480, 627, 826
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	243
PagI	TCATGA	1 cut(s)	673
PciI	ACATGT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	396
PleI	GAGTC	2 cut(s)	501, 863
PpsI	GAGTC	2 cut(s)	501, 863
PscI	ACATGT	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	878
PspN4I	GGNNCC	4 cut(s)	372, 480, 627, 826
PspPI	GGNCC	4 cut(s)	188, 625, 643, 841
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	414, 468, 824
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	27, 224
SalI	GTCGAC	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	309, 558, 579, 855
Sau3AI	GATC	6 cut(s)	228, 289, 414, 468, 810, 824
Sau96I	GGNCC	4 cut(s)	188, 625, 643, 841
SchI	GAGTC	2 cut(s)	501, 863
ScrFI	CCNGG	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	4 cut(s)	188, 625, 643, 841
SmiMI	CAYNNNNRTG	2 cut(s)	27, 224
Sse9I	AATT	4 cut(s)	248, 427, 575, 695
SsiI	CCGC	1 cut(s)	33
SspI	AATATT	1 cut(s)	769
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	257, 316, 595, 671
TaqI	TCGA	4 cut(s)	222, 259, 351, 813
TasI	AATT	4 cut(s)	248, 427, 575, 695
Tru1I	TTAA	4 cut(s)	309, 558, 579, 855
Tru9I	TTAA	4 cut(s)	309, 558, 579, 855
TscAI	CASTG	2 cut(s)	87, 600
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	6 cut(s)	41, 78, 370, 576, 690, 795
TspRI	CASTG	2 cut(s)	87, 600
VpaK11BI	GGWCC	4 cut(s)	188, 625, 643, 841
XapI	RAATTY	2 cut(s)	427, 695
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.