Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

13591966 .. 13599575

Gene Structure 7610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGTTAAAACTCCTCTCTCCTTCTTCTCCGGCGGCGTCACCGTTTCTCCGAGCTCTTGGCTCTATCACCGGCTTCACTCGCCGGAACCCCAACTTGGGCCGTCGAGCTTTTTTTTGCTCTGACGCTAAAAACGGTGATGGGGTGGTGGAAATCGAGTTCAAGGGGTTAGGAAATGAATCAGAGGCTAAGTCCAAGTCGTCATCATCGTCAGCTATCATACCCACAAATCTTAATCCTGAAGATTATGTAAAGGTTTTAGCATTGCCATTGCCGCATAGACCACTGTTTCCGGGTTTCTACATGCCAATATATGTGAAGGATCCTAAACTATTAGCAGCTCTACAGGAAAGTAGAAACCGGCAAGTTCCATATGCCGGTGCTTTCCTTGTCAAGGATGAACCAGGGACCGACCCTTGTTCTGAGATGGAGAATAACATTCCTGATTTGAAAGGGAAAGAGTTGTTTGATCGTCTGCATGAAGTTGGTACGCTTGCCCAGATTTCAAGCATTCAAGGAGACCAAGTAGTCCTAATCGGCCATAGGCGACTTCATATTACAGAGATGGTTGATGAGGATCCCGTGACTGTAAAAGAGAAGCCATATGACAAGGATGATGATGTTATAAAGGCAACATCATATGAGGTTATATCAACTCTAAGAGATGTTCTGGAGACTAGTGTTCTTTGGAGAGATCATGCTCAAACGTATACTCAGCATATAAGTGATTTTGATTTTACAAGGATAGCAGATTTTGGGGCTGCTATATCTGGTGCAAACAAATTGCAATGCCAAAAAGTACTTGAAGAGCTAGATGTGCATGAACGTTTAAAGCTCACACTAGAATTAGTGAAGAAAGAGATAGAGATCAGTAAGATTCAGGCATCTCTTATGAAAAAAATGGAAGAGAAAATGCTTTCTGAACAGCGTCGCAAATTGTTAAATGAGCAGCTTAAAGCAATAAAGAAGGAACTGGGATTAGAGGCTGATGATAGAACAGCGCTTTGTGAAAAGTTTAGGGAGAGGCTTGAACCAAATAGGGAAAAATGCCCACCTAATGTTTTGCAAGTCATAGAAGAAGAGCTTAGCAAAATGCAGCTGTTGGATGCCAGTTCAAGTGAATTTAATATAACACGTAATTATCTAGATTGGTTGATTTCACTTCCCTGGGGAAATTACAGTGATGAGAATTTTGATGTTCTTCGGGCGCAGAAAGTTCTCGATGAAGATCACTATGGATTAACTGAAGTAAAAGAAAGGATATTGGAATTTATTGCTGTTGGCAAACTCAGAGGAATGTCAGAAGGAAAAATCATCTGTCTCGCTGGTCCACCTGGAGTAGGAAAAACCAGCATTGGTCGTTCAATTGCACATGCCTTGAACCGTAATTTCTTTCGATTTTCTGTAGGAGGGTTAACTGATGCAGCTGAAATTAAGGGGCATCGTCGAACCTATGTTGGTGCCATGCCAGGAAAGATGGTACAATGCCTTAAAACTGTGGGAACAGCTAACCCTCTGGTTCTGATCGATGAGATTGACAAGTTGGGAAGGGGGCATGCTGGTCATCCGGCAAGTGCATTGTTGGAGCTTCTAGATCCAGAGCAAAATGCTAATTTTCTAGACCATTATCTTGATGTTCCAATTGACCTATCTAAGGTTCTGTTTGTTTGTACAGCAAATGTTGTGCACATGATTCCAACTCCTCTGTTGGATAGAATGGAGGTCGTTTCCATCGCTGGGTACATTACTGATGAGAAAATCCACATTGCTAGAGAGTATTTGGAGAAGACCACACGTGAAGCATGTGGCATTGAACCTGAACAGGTTGAGGTGACCGATGCAGCTCTTCTTGCACTCATTGAAAATTATTGCCGGGAAGCAGGTGTTAGGAATCTCCAGCAGCACATAGAAAGGATCTACCGCAAGATAGCTCTGCAACTTGTTAGACAAGGAACAGCAAATGAACCGGCAGTTGGTGATCCAATACAGTCTCTCTCAGATGAACCTGCAGTTGTTGAAGTTGCAGATAGTGACGAACATGTTGTTGGTTCAAAGGTTCGAAGAGATACAGGAAATAGTTCCCAAAGTGAAGCAACAAAAACAGTTGAGAAAGTGTTGGTTGACTCATCAAACTTACCTGATTTTGTTGGGAAACCTGTTTTCCATGCTGAACACATCTACGAACAGACTCCAGTTGGAGTTGTTATGGGTCTTGCTTGGACTGCCATGGGTGGTTGCCCCTTGTATATAGAGACCACTCAGGTTGAGGAAGCTCACGGGAAAGGAGCACTTCAAGTCACAGGCCAACTTGGGGATGTCATGAGAGAAAGTGCCCATATTGCTCACACTGTTGCCAGATCGATATTGCTTGATAAAGAGCCAGATAACACTTTCTTTGCCGATTCCAAGCTTCATCTCCATATTCCTGCAGGGGCTATACCTAAGGATGGGCCCAGTGCTGGTTGTACTATGATAACATCCATGCTCTCCCTTGCCATGAAGAAGCCTGTCAACAAGGATTTAGCAATGACTGGGGAAGTAACACTAACCGGGAGGATCCTTCCAATTGGCGGGGTAAAGGAGAAAACAATAGCAGCGAGGAGGGGCGGAGTGAAGACCATCATATTCCCTTCAGCTAACAAGAGGGATTATGAGGAGCTTACCCCCAATGTAAAGGAAGGCCTGGATGTTCACTTTGTAGATGACTACAGTCAGATATTCAACTTGGCTTTCGGTGATCACGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

915

Amino Acids

101.31

Weight (kDa)

5.56

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	85 - 285	3.1e-32	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	438 - 575	1.7e-23	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	438 - 516	7e-07	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	599 - 650	3.1e-18	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	706 - 910	1.1e-74	Lon protease (S16) C-terminal proteolytic domain
ChlI	PF13541	754 - 879	1e-05	Subunit ChlI of Mg-chelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	1 cut(s)	1868
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	1868, 2011
AccB1I	GGYRCC	1 cut(s)	1457
AccI	GTMKAC	1 cut(s)	707
AciI	CCGC	5 cut(s)	32, 272, 1918, 2568, 2604
AclI	AACGTT	1 cut(s)	823
AclWI	GGATC	9 cut(s)	314, 327, 569, 582, 1586, 1919, 1970, 2548, 2561
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	3 cut(s)	1118, 1186, 1265
AcuI	CTGAAG	3 cut(s)	258, 1263, 2613
AcvI	CACGTG	1 cut(s)	1793
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	6 cut(s)	487, 798, 1479, 1669, 1739, 2464
AfeI	AGCGCT	1 cut(s)	999
AflIII	ACRYGT	3 cut(s)	1130, 1790, 2035
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	5 cut(s)	400, 1163, 1330, 1465, 2679
AjuI	GAANNNNNNNTTGG	6 cut(s)	77, 109, 1953, 1985, 2025, 2057
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
Alw21I	GWGCWC	3 cut(s)	55, 1686, 2287
Alw26I	GTCTC	5 cut(s)	510, 665, 1322, 1992, 2243
Alw44I	GTGCAC	1 cut(s)	1682
AlwI	GGATC	9 cut(s)	314, 327, 569, 582, 1586, 1919, 1970, 2548, 2561
Aor51HI	AGCGCT	1 cut(s)	999
AoxI	GGCC	5 cut(s)	97, 535, 2299, 2447, 2677
ApaI	GGGCCC	1 cut(s)	2451
ApaLI	GTGCAC	1 cut(s)	1682
ApeKI	GCWGC	8 cut(s)	335, 758, 946, 1093, 1421, 1838, 1897, 2591
ApoI	RAATTY	3 cut(s)	1118, 1186, 1265
Asp700I	GAANNNNTTC	1 cut(s)	2074
AspLEI	GCGC	2 cut(s)	1000, 1207
AspS9I	GGNCC	5 cut(s)	97, 405, 1325, 2447, 2448
AsuC2I	CCSGG	3 cut(s)	291, 1871, 2548
AsuHPI	GGTGA	6 cut(s)	30, 58, 146, 1840, 1985, 2744
AsuII	TTCGAA	1 cut(s)	2056
AvaII	GGWCC	2 cut(s)	405, 1325
AxyI	CCTNAGG	1 cut(s)	2439
BaeGI	GKGCMC	3 cut(s)	1686, 2332, 2451
BamHI	GGATCC	3 cut(s)	319, 574, 2553
BanI	GGYRCC	1 cut(s)	1457
BanII	GRGCYC	2 cut(s)	55, 2451
BbrPI	CACGTG	1 cut(s)	1793
BbsI	GAAGAC	2 cut(s)	1790, 2618
Bbv12I	GWGCWC	3 cut(s)	55, 1686, 2287
BbvI	GCAGC	8 cut(s)	347, 745, 958, 1105, 1433, 1850, 1909, 2603
BccI	CCATC	7 cut(s)	131, 418, 556, 1468, 1736, 2438, 2624
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	5 cut(s)	402, 1165, 1332, 1467, 2681
BclI	TGATCA	1 cut(s)	2734
BcnI	CCSGG	3 cut(s)	291, 1871, 2548
BcoDI	GTCTC	5 cut(s)	510, 665, 1322, 1992, 2243
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	7 cut(s)	675, 809, 839, 1142, 1589, 1616, 1767
BfmI	CTRYAG	5 cut(s)	341, 1401, 2004, 2424, 2704
BfoI	RGCGCY	1 cut(s)	1001
BfuAI	ACCTGC	2 cut(s)	1868, 2011
BlpI	GCTNAGC	1 cut(s)	1082
BmcAI	AGTACT	1 cut(s)	798
Bme1390I	CCNGG	8 cut(s)	291, 402, 1165, 1332, 1467, 1871, 2548, 2681
Bme18I	GGWCC	2 cut(s)	405, 1325
BmgT120I	GGNCC	5 cut(s)	97, 405, 1325, 2447, 2448
BmiI	GGNNCC	7 cut(s)	86, 321, 406, 576, 1459, 2449, 2555
BmrFI	CCNGG	8 cut(s)	291, 402, 1165, 1332, 1467, 1871, 2548, 2681
BmrI	ACTGGG	3 cut(s)	980, 2445, 2538
BmsI	GCATC	5 cut(s)	890, 1093, 1408, 1447, 1825
BmuI	ACTGGG	3 cut(s)	980, 2445, 2538
BoxI	GACNNNNGTC	1 cut(s)	2706
BpiI	GAAGAC	2 cut(s)	1790, 2618
BpmI	CTGGAG	4 cut(s)	689, 1353, 1877, 2172
Bpu1102I	GCTNAGC	1 cut(s)	1082
Bpu14I	TTCGAA	1 cut(s)	2056
BpuMI	CCSGG	3 cut(s)	291, 1871, 2548
Bsa29I	ATCGAT	2 cut(s)	1524, 2357
BsaAI	YACGTR	2 cut(s)	1133, 1793
BsaBI	GATNNNNATC	3 cut(s)	573, 863, 1224
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	2 cut(s)	510, 2243
BsaJI	CCNNGG	4 cut(s)	401, 1163, 1164, 2223
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 507, 537
Bse118I	RCCGGY	4 cut(s)	68, 357, 374, 1963
Bse1I	ACTGG	5 cut(s)	975, 1107, 2189, 2451, 2533
Bse21I	CCTNAGG	1 cut(s)	2439
Bse3DI	GCAATG	5 cut(s)	260, 266, 791, 1761, 2529
Bse8I	GATNNNNATC	3 cut(s)	573, 863, 1224
BseBI	CCWGG	5 cut(s)	402, 1165, 1332, 1467, 2681
BseCI	ATCGAT	2 cut(s)	1524, 2357
BseDI	CCNNGG	4 cut(s)	401, 1163, 1164, 2223
BseGI	GGATG	8 cut(s)	400, 616, 1108, 1561, 2317, 2449, 2474, 2689
BseJI	GATNNNNATC	3 cut(s)	573, 863, 1224
BseMI	GCAATG	5 cut(s)	260, 266, 791, 1761, 2529
BseMII	CTCAG	5 cut(s)	411, 725, 1300, 2007, 2270
BseNI	ACTGG	5 cut(s)	975, 1107, 2189, 2451, 2533
BseRI	GAGGAG	3 cut(s)	1689, 2611, 2666
BseSI	GKGCMC	3 cut(s)	1686, 2332, 2451
BseXI	GCAGC	8 cut(s)	347, 745, 958, 1105, 1433, 1850, 1909, 2603
BseYI	CCCAGC	1 cut(s)	1733
BshFI	GGCC	5 cut(s)	99, 537, 2301, 2449, 2679
BshNI	GGYRCC	1 cut(s)	1457
BshVI	ATCGAT	2 cut(s)	1524, 2357
BsiHKAI	GWGCWC	3 cut(s)	55, 1686, 2287
BslFI	GGGAC	1 cut(s)	418
BsmAI	GTCTC	5 cut(s)	510, 665, 1322, 1992, 2243
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	5 cut(s)	99, 537, 2301, 2449, 2679
Bso31I	GGTCTC	2 cut(s)	510, 2243
Bsp119I	TTCGAA	1 cut(s)	2056
Bsp120I	GGGCCC	1 cut(s)	2447
Bsp1286I	GDGCHC	5 cut(s)	55, 1686, 2287, 2332, 2451
Bsp1407I	TGTACA	1 cut(s)	1667
Bsp1720I	GCTNAGC	1 cut(s)	1082
Bsp19I	CCATGG	1 cut(s)	2223
BspACI	CCGC	5 cut(s)	32, 272, 1918, 2568, 2604
BspANI	GGCC	5 cut(s)	99, 537, 2301, 2449, 2679
BspCNI	CTCAG	5 cut(s)	412, 724, 1299, 2006, 2269
BspDI	ATCGAT	2 cut(s)	1524, 2357
BspHI	TCATGA	1 cut(s)	2316
BspLI	GGNNCC	7 cut(s)	86, 321, 406, 576, 1459, 2449, 2555
BspMAI	CTGCAG	2 cut(s)	2008, 2428
BspMI	ACCTGC	2 cut(s)	1868, 2011
BspPI	GGATC	9 cut(s)	314, 327, 569, 582, 1586, 1919, 1970, 2548, 2561
BspQI	GCTCTTC	3 cut(s)	798, 1071, 1848
BspT104I	TTCGAA	1 cut(s)	2056
BspT107I	GGYRCC	1 cut(s)	1457
BspTNI	GGTCTC	2 cut(s)	510, 2243
BsrDI	GCAATG	5 cut(s)	260, 266, 791, 1761, 2529
BsrFI	RCCGGY	4 cut(s)	68, 357, 374, 1963
BsrGI	TGTACA	1 cut(s)	1667
BsrI	ACTGG	5 cut(s)	975, 1107, 2189, 2451, 2533
BssAI	RCCGGY	4 cut(s)	68, 357, 374, 1963
BssECI	CCNNGG	4 cut(s)	401, 1163, 1164, 2223
BssNAI	GTATAC	1 cut(s)	708
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	2223
Bst1107I	GTATAC	1 cut(s)	708
Bst2UI	CCWGG	5 cut(s)	402, 1165, 1332, 1467, 2681
Bst6I	CTCTTC	5 cut(s)	798, 897, 1071, 1848, 2053
BstACI	GRCGYC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	1667
BstBAI	YACGTR	2 cut(s)	1133, 1793
BstBI	TTCGAA	1 cut(s)	2056
BstC8I	GCNNGC	2 cut(s)	492, 1554
BstDSI	CCRYGG	1 cut(s)	2223
BstEII	GGTNACC	1 cut(s)	1828
BstENI	CCTNNNNNAGG	3 cut(s)	389, 1335, 1649
BstF5I	GGATG	8 cut(s)	400, 616, 1108, 1561, 2317, 2449, 2474, 2689
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	2 cut(s)	1000, 1207
BstMAI	GTCTC	5 cut(s)	510, 665, 1322, 1992, 2243
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 271, 814, 1847, 2219, 2336
BstNI	CCWGG	5 cut(s)	402, 1165, 1332, 1467, 2681
BstNSI	RCATGY	5 cut(s)	304, 1373, 1556, 1803, 2039
BstPAI	GACNNNNGTC	1 cut(s)	2706
BstPI	GGTNACC	1 cut(s)	1828
BstSCI	CCNGG	8 cut(s)	289, 400, 1163, 1330, 1465, 1869, 2546, 2679
BstSFI	CTRYAG	5 cut(s)	341, 1401, 2004, 2424, 2704
BstSLI	GKGCMC	3 cut(s)	1686, 2332, 2451
BstV1I	GCAGC	8 cut(s)	347, 745, 958, 1105, 1433, 1850, 1909, 2603
BstV2I	GAAGAC	2 cut(s)	1790, 2618
BstX2I	RGATCY	5 cut(s)	319, 574, 1591, 1911, 2553
BstYI	RGATCY	5 cut(s)	319, 574, 1591, 1911, 2553
BstZ17I	GTATAC	1 cut(s)	708
Bsu15I	ATCGAT	2 cut(s)	1524, 2357
Bsu36I	CCTNAGG	1 cut(s)	2439
BsuRI	GGCC	5 cut(s)	99, 537, 2301, 2449, 2679
BsuTUI	ATCGAT	2 cut(s)	1524, 2357
BtgI	CCRYGG	1 cut(s)	2223
BtgZI	GCGATG	1 cut(s)	1714
BtsCI	GGATG	8 cut(s)	400, 616, 1108, 1561, 2317, 2449, 2474, 2689
BtsIMutI	CAGTG	4 cut(s)	281, 1183, 2343, 2458
BveI	ACCTGC	2 cut(s)	1868, 2011
Cac8I	GCNNGC	2 cut(s)	492, 1554
CciI	TCATGA	1 cut(s)	2316
CfoI	GCGC	2 cut(s)	1000, 1207
Cfr10I	RCCGGY	4 cut(s)	68, 357, 374, 1963
Cfr13I	GGNCC	5 cut(s)	97, 405, 1325, 2447, 2448
ClaI	ATCGAT	2 cut(s)	1524, 2357
CseI	GACGC	3 cut(s)	24, 131, 914
Csp6I	GTAC	6 cut(s)	486, 797, 1478, 1668, 1738, 2463
CspCI	CAANNNNNGTGG	2 cut(s)	2242, 2277
CviQI	GTAC	6 cut(s)	486, 797, 1478, 1668, 1738, 2463
DraI	TTTAAA	1 cut(s)	828
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	5 cut(s)	798, 897, 1071, 1848, 2053
EarI	CTCTTC	5 cut(s)	798, 897, 1071, 1848, 2053
EciI	GGCGGA	1 cut(s)	2619
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	2223
Eco147I	AGGCCT	1 cut(s)	2679
Eco24I	GRGCYC	2 cut(s)	55, 2451
Eco31I	GGTCTC	2 cut(s)	510, 2243
Eco47I	GGWCC	2 cut(s)	405, 1325
Eco47III	AGCGCT	1 cut(s)	999
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	3 cut(s)	258, 1263, 2613
Eco72I	CACGTG	1 cut(s)	1793
Eco81I	CCTNAGG	1 cut(s)	2439
Eco91I	GGTNACC	1 cut(s)	1828
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	3 cut(s)	389, 1335, 1649
EcoO65I	GGTNACC	1 cut(s)	1828
EcoRII	CCWGG	5 cut(s)	400, 1163, 1330, 1465, 2679
EcoT14I	CCWWGG	1 cut(s)	2223
EcoT38I	GRGCYC	2 cut(s)	55, 2451
ErhI	CCWWGG	1 cut(s)	2223
FalI	AAGNNNNNCTT	4 cut(s)	1065, 1097, 2271, 2303
FaqI	GGGAC	1 cut(s)	418
FauI	CCCGC	1 cut(s)	2561
FauNDI	CATATG	3 cut(s)	370, 601, 637
FbaI	TGATCA	1 cut(s)	2734
FblI	GTMKAC	1 cut(s)	707
FokI	GGATG	8 cut(s)	407, 623, 1115, 1548, 2324, 2456, 2461, 2696
FriOI	GRGCYC	2 cut(s)	55, 2451
FspBI	CTAG	7 cut(s)	675, 809, 839, 1142, 1589, 1616, 1767
GlaI	GCGC	2 cut(s)	999, 1206
GsaI	CCCAGC	1 cut(s)	1737
GsuI	CTGGAG	4 cut(s)	689, 1353, 1877, 2172
HaeII	RGCGCY	1 cut(s)	1001
HaeIII	GGCC	5 cut(s)	99, 537, 2301, 2449, 2679
HgaI	GACGC	3 cut(s)	24, 131, 914
HhaI	GCGC	2 cut(s)	1000, 1207
Hin1I	GRCGYC	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	998, 1205
HinP1I	GCGC	2 cut(s)	998, 1205
HincII	GTYRAC	3 cut(s)	1413, 2119, 2509
HindII	GTYRAC	3 cut(s)	1413, 2119, 2509
HindIII	AAGCTT	1 cut(s)	2405
HinfI	GANTC	7 cut(s)	176, 874, 1690, 1888, 2120, 2185, 2399
HpaI	GTTAAC	1 cut(s)	1413
HphI	GGTGA	6 cut(s)	30, 58, 146, 1840, 1985, 2744
Hpy166II	GTNNAC	7 cut(s)	708, 1328, 1413, 1684, 2119, 2509, 2689
Hpy8I	GTNNAC	7 cut(s)	708, 1328, 1413, 1684, 2119, 2509, 2689
Hpy99I	CGWCG	3 cut(s)	105, 930, 1446
HpyAV	CCTTC	8 cut(s)	30, 310, 958, 1295, 1539, 2567, 2637, 2669
HpyCH4IV	ACGT	4 cut(s)	704, 823, 1132, 1792
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 271, 814, 1847, 2219, 2336
HpySE526I	ACGT	4 cut(s)	704, 823, 1132, 1792
Hsp92I	GRCGYC	1 cut(s)	35
HspAI	GCGC	2 cut(s)	998, 1205
Ksp22I	TGATCA	1 cut(s)	2734
KspAI	GTTAAC	1 cut(s)	1413
LguI	GCTCTTC	3 cut(s)	798, 1071, 1848
LmnI	GCTCC	3 cut(s)	1582, 2282, 2653
Lsp1109I	GCAGC	8 cut(s)	347, 745, 958, 1105, 1433, 1850, 1909, 2603
LweI	GCATC	5 cut(s)	890, 1093, 1408, 1447, 1825
MaeI	CTAG	7 cut(s)	675, 809, 839, 1142, 1589, 1616, 1767
MaeII	ACGT	4 cut(s)	704, 823, 1132, 1792
MaeIII	GTNAC	6 cut(s)	36, 580, 1828, 2027, 2293, 2536
MfeI	CAATTG	3 cut(s)	1362, 1638, 2562
MflI	RGATCY	5 cut(s)	319, 574, 1591, 1911, 2553
MhlI	GDGCHC	5 cut(s)	55, 1686, 2287, 2332, 2451
MlyI	GAGTC	2 cut(s)	2114, 2179
MmeI	TCCRAC	5 cut(s)	1080, 1560, 1686, 1718, 2173
MroXI	GAANNNNTTC	1 cut(s)	2074
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	1096, 1424
MspR9I	CCNGG	8 cut(s)	291, 402, 1165, 1332, 1467, 1871, 2548, 2681
MunI	CAATTG	3 cut(s)	1362, 1638, 2562
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	5 cut(s)	402, 1165, 1332, 1467, 2681
MwoI	GCNNNNNNNGC	6 cut(s)	78, 271, 814, 1847, 2219, 2336
NciI	CCSGG	3 cut(s)	291, 1871, 2548
NcoI	CCATGG	1 cut(s)	2223
NdeI	CATATG	3 cut(s)	370, 601, 637
NlaIV	GGNNCC	7 cut(s)	86, 321, 406, 576, 1459, 2449, 2555
NmuCI	GTSAC	5 cut(s)	36, 580, 1828, 2027, 2293
NspI	RCATGY	5 cut(s)	304, 1373, 1556, 1803, 2039
NspV	TTCGAA	1 cut(s)	2056
PaeI	GCATGC	1 cut(s)	1556
PagI	TCATGA	1 cut(s)	2316
PaqCI	CACCTGC	1 cut(s)	1868
PasI	CCCWGGG	1 cut(s)	1164
PceI	AGGCCT	1 cut(s)	2679
PciI	ACATGT	1 cut(s)	2035
PciSI	GCTCTTC	3 cut(s)	798, 1071, 1848
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 2736
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	2074
PfeI	GAWTC	5 cut(s)	176, 874, 1690, 1888, 2399
PleI	GAGTC	2 cut(s)	2114, 2179
PmaCI	CACGTG	1 cut(s)	1793
PmlI	CACGTG	1 cut(s)	1793
PpsI	GAGTC	2 cut(s)	2114, 2179
Ppu21I	YACGTR	2 cut(s)	1133, 1793
PscI	ACATGT	1 cut(s)	2035
PshAI	GACNNNNGTC	1 cut(s)	2706
PsiI	TTATAA	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	823
Psp6I	CCWGG	5 cut(s)	400, 1163, 1330, 1465, 2679
PspCI	CACGTG	1 cut(s)	1793
PspEI	GGTNACC	1 cut(s)	1828
PspFI	CCCAGC	1 cut(s)	1733
PspGI	CCWGG	5 cut(s)	400, 1163, 1330, 1465, 2679
PspN4I	GGNNCC	7 cut(s)	86, 321, 406, 576, 1459, 2449, 2555
PspOMI	GGGCCC	1 cut(s)	2447
PspPI	GGNCC	5 cut(s)	97, 405, 1325, 2447, 2448
PstI	CTGCAG	2 cut(s)	2008, 2428
PsuI	RGATCY	5 cut(s)	319, 574, 1591, 1911, 2553
PvuII	CAGCTG	2 cut(s)	1096, 1424
RsaI	GTAC	6 cut(s)	487, 798, 1479, 1669, 1739, 2464
RsaNI	GTAC	6 cut(s)	486, 797, 1478, 1668, 1738, 2463
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	55
SapI	GCTCTTC	3 cut(s)	798, 1071, 1848
Sau96I	GGNCC	5 cut(s)	97, 405, 1325, 2447, 2448
SbfI	CCTGCAGG	1 cut(s)	2428
ScaI	AGTACT	1 cut(s)	798
SchI	GAGTC	2 cut(s)	2114, 2179
ScrFI	CCNGG	8 cut(s)	291, 402, 1165, 1332, 1467, 1871, 2548, 2681
SdaI	CCTGCAGG	1 cut(s)	2428
SduI	GDGCHC	5 cut(s)	55, 1686, 2287, 2332, 2451
SfaNI	GCATC	5 cut(s)	890, 1093, 1408, 1447, 1825
SfcI	CTRYAG	5 cut(s)	341, 1401, 2004, 2424, 2704
SfuI	TTCGAA	1 cut(s)	2056
SinI	GGWCC	2 cut(s)	405, 1325
SmiMI	CAYNNNNRTG	1 cut(s)	720
SpeI	ACTAGT	1 cut(s)	674
SphI	GCATGC	1 cut(s)	1556
Sse8387I	CCTGCAGG	1 cut(s)	2428
SseBI	AGGCCT	1 cut(s)	2679
SsiI	CCGC	5 cut(s)	32, 272, 1918, 2568, 2604
SspMI	CTAG	7 cut(s)	675, 809, 839, 1142, 1589, 1616, 1767
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	2679
StyD4I	CCNGG	8 cut(s)	289, 400, 1163, 1330, 1465, 1869, 2546, 2679
StyI	CCWWGG	1 cut(s)	2223
TaiI	ACGT	4 cut(s)	707, 826, 1135, 1795
TaqI	TCGA	8 cut(s)	103, 153, 1218, 1393, 1444, 1524, 2056, 2357
TaqII	GACCGA	2 cut(s)	422, 1847
TatI	WGTACW	3 cut(s)	796, 1667, 2462
TauI	GCSGC	2 cut(s)	35, 274
TfiI	GAWTC	5 cut(s)	176, 874, 1690, 1888, 2399
TscAI	CASTG	4 cut(s)	288, 1183, 2350, 2458
TseFI	GTSAC	5 cut(s)	36, 580, 1828, 2027, 2293
TseI	GCWGC	8 cut(s)	335, 758, 946, 1093, 1421, 1838, 1897, 2591
Tsp45I	GTSAC	5 cut(s)	36, 580, 1828, 2027, 2293
TspRI	CASTG	4 cut(s)	288, 1183, 2350, 2458
VneI	GTGCAC	1 cut(s)	1682
VpaK11BI	GGWCC	2 cut(s)	405, 1325
XagI	CCTNNNNNAGG	3 cut(s)	389, 1335, 1649
XapI	RAATTY	3 cut(s)	1118, 1186, 1265
XbaI	TCTAGA	3 cut(s)	1141, 1588, 1615
XceI	RCATGY	5 cut(s)	304, 1373, 1556, 1803, 2039
XmiI	GTMKAC	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	2074
XspI	CTAG	7 cut(s)	675, 809, 839, 1142, 1589, 1616, 1767
ZrmI	AGTACT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.