Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Reverse (-)

11447838 .. 11455300

Gene Structure 7463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGTTAAAACTCCTCTCTCCTTCTCCGGCGGCGTCACCGTTTCTCCGAGCCGTTGGCTCTCTCACCGGCTTCACTCGCCGGAATCCCAACTTCAGCCGTCGAGCTTTTTTTTGCTCTGACGCTAAAAACGGTGATGGGGTGGTGGAAATCGAGTTCAAGGGGTTAGGAAATGAAGCAGAGGCCGAGTCCAAGTCGACATCATCATCAGCTATCATACCCACAAATCTTAATCCTGAAGATTATATGAAGGTTTTAGCATTGCCATTGCCGCATAGACCACTGTTTCCGGGTTTCTACATGCCAATATATGTGAAGGATCCTAAACTATTAGCAGCTCTACAGGAAAGTAGAAACCGGCAAGTTCCATATGCCGGTGCTTTCCTTGTCAAGGATGAACCAGGGACCGACCCTTGTTCTGAGATGGAGAATAACATTCCTGATTTGAAAGGGAAAGAGTTGTTTGATCGTCTGCATGAAGTTGGTACGCTTGCCCAGATTTCAAGCATTCAAGGAGACCAAGTAGTCCTAATCGGCCATAGGCGACTTCATATTACAGAGATGGTTGATGAGGATCCCGTGACTGTAAAAGTTGATCATCTCAAGGAGAAGCCATATGACAAGGATGATGATGTTATAAAGGCAACATCATATGAGGTTATATCAACTCTAAGAGATGTTCTGGAGACTAGTGTTCTTTGGAGAGATCATGCTCAAACATATACTCAGCATATAAGTGATTTTGATTTTACAAGGATAGCAGATTTTGGGGCTGCTATATCTGGTGCAAACAAATTGCAATGCCAAAAAGTACTTGAAGAGCTAGATGTGCATGAACGTTTAAAGCTCACACTAGAATTAGTGAAGAAAGAGATAGAGATCAGTAAGATTCAGGCATCTCTTATGAAAAAAATGGAAGAGAAAATGCTTTCTGAACAGCGTCGCAAATTGTTAAATGAGCAGCTTAAAGCAATAAAGAAGGAACTGGGATTAGAGGCTGATGATAGAACAGCGCTTTGTGAAAAGTTTAGGGAGAGGCTTGAACCAAATAGGGAAAAATGCCCACCTAATGTTTTGCAAGTCATAGAAGAAGAGCTTAGCAAAATGCAGCTGTTGGATGCCAGTTCAAGTGAATTTAATATAACACGTAATTATCTAGATTGGTTGATTTCACTTCCCTGGGGAAATTACAGTGATGAGAATTTTGATGTTCTTCGGGCGCAGAAAGTTCTCGATGAAGATCATTATGGATTAACTGAAGTAAAAGAAAGGATATTGGAATTTATTGCTGTTGGAAAACTCAGAGGAATGTCAGAAGGAAAAATCATCTGTCTCGCTGGCCCACCTGGAGTAGGAAAAACCAGCATTGGTCGCTCAATTGCACATGCCTTGAACCGTAATTTCTTTCGATTTTCTGTAGGAGGGTTAACTGACGCAGCTGAAATTAAGGGGCATCGTCGAACCTATGTTGGTGCCATGCCAGGAAAGATGGTACAATGCCTTAAAACTGTGGGAACAGCTAACCCTCTGGTTCTGATCGATGAGATTGACAAGTTGGGAAGGGGACATGCTGGTCATCCGGCAAGTGCATTGTTGGAGCTTCTAGATCCAGAGCAAAATGCTAATTTTCTAGACCATTATCTTGATGTTCCAATTGACCTATCTAAGGTTCTGTTTGTTTGTACAGCAAATGTTGTGCACATGATTCCAACTCCTCTGTTGGATAGAATGGAGGTCGTTTCCATCGCTGGGTACATTACTGATGAGAAAATCCACATTGCTAGAGAGTATTTGGAGAAGACCACACGTGAAGCATGTGGCATTGAACCTGAACAGGTTGAGGTGACCGATGCAGCTCTTCTTGCACTCATTGAAAATTATTGCCGGGAAGCAGGTGTTAGGAACCTCCAGCAGCACATAGAAAGAATCTACCGCAAGATAGCTCTGCAACTTGTTAGACAAGGAGCAGCAAATGAACCGGCAGTTGGTGATAAAATACAGTCTCTCTCAGATGAACCTGCAGTTGTTGAAGTTGCAGATAGTGATGAACATGTTGTTGGTTCAAAGGTTCAAAGAGATACTAGAAATATTCCCAAAAGTGAAGCAACAAAAACAGTTGAGAAAGTGTTGGTTGACTCATCAAACTTACCTGATTTTGTTGGGAAACCTGTTTTCCATGCTGAACACATCTACGAACAGACTCCAGTTGGAGTTGTTATGGGTCTTGCTTGGACTGCCATGGGTGGTTGCCCCTTGTATATAGAGACCACTCAGGTTGAGGAAGCTCACGGGAAAGGAGCACTTCAAGTCACAGGCCAACTTGGGGATGTCATGAGAGAAAGTGCCCATATTGCTCACACTGTTGCCAGATCGATATTGCTTGATAAAGAGCCAGATAACACTTTCTTTGCCGATTCCAAGCTTCATCTCCATATTCCTGCAGGGGCTATACCTAAGGATGGGCCCAGTGCTGGTTGTACTATGATAACATCCATGCTCTCCCTTGCCATGAAGAAGCCTGTCAACAAGGATTTAGCAATGACTGGGGAAGTAACACTAACCGGGAGGATCCTTCCAATTGGCGGGGTAAAGGAGAAAACAATAGCAGCGAGGAGGGGCGGAGTGAAGACCATCATATTCCCTTCAGCTAACAAGAGGGATTATGAGGAGCTTACCCCCAATGTAAAGGAAGGCCTGGATGTTCACTTTGTAGATGACTACAGTCAGATATTCAACTTGGCTTTCGGTGATCACGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

919

Amino Acids

102.0

Weight (kDa)

5.59

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	84 - 289	9.6e-36	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	442 - 579	1.7e-23	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	442 - 520	7e-07	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	603 - 654	3.5e-18	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	710 - 914	1.2e-74	Lon protease (S16) C-terminal proteolytic domain
ChlI	PF13541	758 - 883	1e-05	Subunit ChlI of Mg-chelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AarI	CACCTGC	1 cut(s)	1880
AasI	GACNNNNNNGTC	2 cut(s)	521, 1569
Acc36I	ACCTGC	2 cut(s)	1880, 2023
AccB1I	GGYRCC	1 cut(s)	1469
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	5 cut(s)	29, 269, 1930, 2580, 2616
AclI	AACGTT	1 cut(s)	835
AclWI	GGATC	7 cut(s)	311, 324, 566, 579, 1598, 2560, 2573
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	3 cut(s)	1130, 1198, 1277
AcuI	CTGAAG	4 cut(s)	76, 255, 1275, 2625
AcvI	CACGTG	1 cut(s)	1805
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	6 cut(s)	484, 810, 1491, 1681, 1751, 2476
AfeI	AGCGCT	1 cut(s)	1011
AflIII	ACRYGT	3 cut(s)	1142, 1802, 2047
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	5 cut(s)	397, 1175, 1342, 1477, 2691
AjuI	GAANNNNNNNTTGG	4 cut(s)	1965, 1997, 2037, 2069
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
Alw21I	GWGCWC	2 cut(s)	1698, 2299
Alw26I	GTCTC	5 cut(s)	507, 677, 1334, 2004, 2255
Alw44I	GTGCAC	1 cut(s)	1694
AlwI	GGATC	7 cut(s)	311, 324, 566, 579, 1598, 2560, 2573
Aor51HI	AGCGCT	1 cut(s)	1011
AoxI	GGCC	6 cut(s)	180, 532, 1336, 2311, 2459, 2689
ApaI	GGGCCC	1 cut(s)	2463
ApaLI	GTGCAC	1 cut(s)	1694
ApeKI	GCWGC	9 cut(s)	332, 770, 958, 1105, 1433, 1850, 1909, 1964, 2603
ApoI	RAATTY	3 cut(s)	1130, 1198, 1277
AspLEI	GCGC	2 cut(s)	1012, 1219
AspS9I	GGNCC	4 cut(s)	402, 1337, 2459, 2460
AsuC2I	CCSGG	3 cut(s)	288, 1883, 2560
AsuHPI	GGTGA	6 cut(s)	27, 55, 143, 1852, 1997, 2756
AvaII	GGWCC	1 cut(s)	402
AxyI	CCTNAGG	1 cut(s)	2451
BaeGI	GKGCMC	3 cut(s)	1698, 2344, 2463
BamHI	GGATCC	3 cut(s)	316, 571, 2565
BanI	GGYRCC	1 cut(s)	1469
BanII	GRGCYC	1 cut(s)	2463
BbrPI	CACGTG	1 cut(s)	1805
BbsI	GAAGAC	2 cut(s)	1802, 2630
Bbv12I	GWGCWC	2 cut(s)	1698, 2299
BbvI	GCAGC	9 cut(s)	344, 757, 970, 1117, 1445, 1862, 1921, 1976, 2615
BccI	CCATC	7 cut(s)	128, 415, 553, 1480, 1748, 2450, 2636
BceAI	ACGGC	2 cut(s)	35, 81
BciT130I	CCWGG	5 cut(s)	399, 1177, 1344, 1479, 2693
BclI	TGATCA	2 cut(s)	592, 2746
BcnI	CCSGG	3 cut(s)	288, 1883, 2560
BcoDI	GTCTC	5 cut(s)	507, 677, 1334, 2004, 2255
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	8 cut(s)	687, 821, 851, 1154, 1601, 1628, 1779, 2079
BfmI	CTRYAG	5 cut(s)	338, 1413, 2016, 2436, 2716
BfoI	RGCGCY	1 cut(s)	1013
BfuAI	ACCTGC	2 cut(s)	1880, 2023
BlpI	GCTNAGC	1 cut(s)	1094
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	8 cut(s)	288, 399, 1177, 1344, 1479, 1883, 2560, 2693
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	4 cut(s)	402, 1337, 2459, 2460
BmiI	GGNNCC	7 cut(s)	318, 403, 573, 1471, 1901, 2461, 2567
BmrFI	CCNGG	8 cut(s)	288, 399, 1177, 1344, 1479, 1883, 2560, 2693
BmrI	ACTGGG	3 cut(s)	992, 2457, 2550
BmsI	GCATC	4 cut(s)	902, 1105, 1459, 1837
BmuI	ACTGGG	3 cut(s)	992, 2457, 2550
BoxI	GACNNNNGTC	1 cut(s)	2718
BpiI	GAAGAC	2 cut(s)	1802, 2630
BpmI	CTGGAG	4 cut(s)	701, 1365, 1889, 2184
Bpu1102I	GCTNAGC	1 cut(s)	1094
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	3 cut(s)	288, 1883, 2560
Bsa29I	ATCGAT	2 cut(s)	1536, 2369
BsaAI	YACGTR	2 cut(s)	1145, 1805
BsaBI	GATNNNNATC	3 cut(s)	570, 875, 1236
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	507, 2255
BsaJI	CCNNGG	4 cut(s)	398, 1175, 1176, 2235
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 504, 534
Bse118I	RCCGGY	4 cut(s)	65, 354, 371, 1975
Bse1I	ACTGG	5 cut(s)	987, 1119, 2201, 2463, 2545
Bse21I	CCTNAGG	1 cut(s)	2451
Bse3DI	GCAATG	5 cut(s)	257, 263, 803, 1773, 2541
Bse8I	GATNNNNATC	3 cut(s)	570, 875, 1236
BseBI	CCWGG	5 cut(s)	399, 1177, 1344, 1479, 2693
BseCI	ATCGAT	2 cut(s)	1536, 2369
BseDI	CCNNGG	4 cut(s)	398, 1175, 1176, 2235
BseGI	GGATG	8 cut(s)	397, 628, 1120, 1573, 2329, 2461, 2486, 2701
BseJI	GATNNNNATC	3 cut(s)	570, 875, 1236
BseMI	GCAATG	5 cut(s)	257, 263, 803, 1773, 2541
BseMII	CTCAG	5 cut(s)	408, 737, 1312, 2019, 2282
BseNI	ACTGG	5 cut(s)	987, 1119, 2201, 2463, 2545
BseRI	GAGGAG	3 cut(s)	1701, 2623, 2678
BseSI	GKGCMC	3 cut(s)	1698, 2344, 2463
BseXI	GCAGC	9 cut(s)	344, 757, 970, 1117, 1445, 1862, 1921, 1976, 2615
BseYI	CCCAGC	1 cut(s)	1745
BshFI	GGCC	6 cut(s)	182, 534, 1338, 2313, 2461, 2691
BshNI	GGYRCC	1 cut(s)	1469
BshVI	ATCGAT	2 cut(s)	1536, 2369
BsiHKAI	GWGCWC	2 cut(s)	1698, 2299
BslFI	GGGAC	2 cut(s)	415, 1575
BsmAI	GTCTC	5 cut(s)	507, 677, 1334, 2004, 2255
BsmFI	GGGAC	2 cut(s)	415, 1575
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	6 cut(s)	182, 534, 1338, 2313, 2461, 2691
Bso31I	GGTCTC	2 cut(s)	507, 2255
Bsp120I	GGGCCC	1 cut(s)	2459
Bsp1286I	GDGCHC	4 cut(s)	1698, 2299, 2344, 2463
Bsp1407I	TGTACA	1 cut(s)	1679
Bsp1720I	GCTNAGC	1 cut(s)	1094
Bsp19I	CCATGG	1 cut(s)	2235
BspACI	CCGC	5 cut(s)	29, 269, 1930, 2580, 2616
BspANI	GGCC	6 cut(s)	182, 534, 1338, 2313, 2461, 2691
BspCNI	CTCAG	5 cut(s)	409, 736, 1311, 2018, 2281
BspDI	ATCGAT	2 cut(s)	1536, 2369
BspHI	TCATGA	1 cut(s)	2328
BspLI	GGNNCC	7 cut(s)	318, 403, 573, 1471, 1901, 2461, 2567
BspMAI	CTGCAG	2 cut(s)	2020, 2440
BspMI	ACCTGC	2 cut(s)	1880, 2023
BspPI	GGATC	7 cut(s)	311, 324, 566, 579, 1598, 2560, 2573
BspQI	GCTCTTC	3 cut(s)	810, 1083, 1860
BspT107I	GGYRCC	1 cut(s)	1469
BspTNI	GGTCTC	2 cut(s)	507, 2255
BsrDI	GCAATG	5 cut(s)	257, 263, 803, 1773, 2541
BsrFI	RCCGGY	4 cut(s)	65, 354, 371, 1975
BsrGI	TGTACA	1 cut(s)	1679
BsrI	ACTGG	5 cut(s)	987, 1119, 2201, 2463, 2545
BssAI	RCCGGY	4 cut(s)	65, 354, 371, 1975
BssECI	CCNNGG	4 cut(s)	398, 1175, 1176, 2235
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	2235
Bst2UI	CCWGG	5 cut(s)	399, 1177, 1344, 1479, 2693
Bst6I	CTCTTC	4 cut(s)	810, 909, 1083, 1860
BstACI	GRCGYC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	1679
BstBAI	YACGTR	2 cut(s)	1145, 1805
BstC8I	GCNNGC	2 cut(s)	489, 1336
BstDEI	CTNAG	9 cut(s)	417, 668, 723, 1094, 1298, 1662, 2005, 2268, 2451
BstDSI	CCRYGG	1 cut(s)	2235
BstEII	GGTNACC	1 cut(s)	1840
BstENI	CCTNNNNNAGG	3 cut(s)	386, 1347, 1661
BstF5I	GGATG	8 cut(s)	397, 628, 1120, 1573, 2329, 2461, 2486, 2701
BstH2I	RGCGCY	1 cut(s)	1013
BstHHI	GCGC	2 cut(s)	1012, 1219
BstMAI	GTCTC	5 cut(s)	507, 677, 1334, 2004, 2255
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 268, 826, 1368, 1859, 2231, 2348
BstNI	CCWGG	5 cut(s)	399, 1177, 1344, 1479, 2693
BstNSI	RCATGY	5 cut(s)	301, 1385, 1568, 1815, 2051
BstPAI	GACNNNNGTC	1 cut(s)	2718
BstPI	GGTNACC	1 cut(s)	1840
BstSCI	CCNGG	8 cut(s)	286, 397, 1175, 1342, 1477, 1881, 2558, 2691
BstSFI	CTRYAG	5 cut(s)	338, 1413, 2016, 2436, 2716
BstSLI	GKGCMC	3 cut(s)	1698, 2344, 2463
BstV1I	GCAGC	9 cut(s)	344, 757, 970, 1117, 1445, 1862, 1921, 1976, 2615
BstV2I	GAAGAC	2 cut(s)	1802, 2630
BstX2I	RGATCY	4 cut(s)	316, 571, 1603, 2565
BstYI	RGATCY	4 cut(s)	316, 571, 1603, 2565
Bsu15I	ATCGAT	2 cut(s)	1536, 2369
Bsu36I	CCTNAGG	1 cut(s)	2451
BsuRI	GGCC	6 cut(s)	182, 534, 1338, 2313, 2461, 2691
BsuTUI	ATCGAT	2 cut(s)	1536, 2369
BtgI	CCRYGG	1 cut(s)	2235
BtgZI	GCGATG	1 cut(s)	1726
BtsCI	GGATG	8 cut(s)	397, 628, 1120, 1573, 2329, 2461, 2486, 2701
BtsIMutI	CAGTG	4 cut(s)	278, 1195, 2355, 2470
BveI	ACCTGC	2 cut(s)	1880, 2023
Cac8I	GCNNGC	2 cut(s)	489, 1336
CciI	TCATGA	1 cut(s)	2328
CfoI	GCGC	2 cut(s)	1012, 1219
Cfr10I	RCCGGY	4 cut(s)	65, 354, 371, 1975
Cfr13I	GGNCC	4 cut(s)	402, 1337, 2459, 2460
ClaI	ATCGAT	2 cut(s)	1536, 2369
CseI	GACGC	4 cut(s)	21, 128, 926, 1439
Csp6I	GTAC	6 cut(s)	483, 809, 1490, 1680, 1750, 2475
CspCI	CAANNNNNGTGG	2 cut(s)	2254, 2289
CviQI	GTAC	6 cut(s)	483, 809, 1490, 1680, 1750, 2475
DdeI	CTNAG	9 cut(s)	417, 668, 723, 1094, 1298, 1662, 2005, 2268, 2451
DraI	TTTAAA	1 cut(s)	840
DrdI	GACNNNNNNGTC	2 cut(s)	521, 1569
DseDI	GACNNNNNNGTC	2 cut(s)	521, 1569
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	4 cut(s)	810, 909, 1083, 1860
EarI	CTCTTC	4 cut(s)	810, 909, 1083, 1860
EciI	GGCGGA	1 cut(s)	2631
Eco130I	CCWWGG	1 cut(s)	2235
Eco147I	AGGCCT	1 cut(s)	2691
Eco24I	GRGCYC	1 cut(s)	2463
Eco31I	GGTCTC	2 cut(s)	507, 2255
Eco47I	GGWCC	1 cut(s)	402
Eco47III	AGCGCT	1 cut(s)	1011
Eco57I	CTGAAG	4 cut(s)	76, 255, 1275, 2625
Eco72I	CACGTG	1 cut(s)	1805
Eco81I	CCTNAGG	1 cut(s)	2451
Eco91I	GGTNACC	1 cut(s)	1840
EcoNI	CCTNNNNNAGG	3 cut(s)	386, 1347, 1661
EcoO65I	GGTNACC	1 cut(s)	1840
EcoRII	CCWGG	5 cut(s)	397, 1175, 1342, 1477, 2691
EcoT14I	CCWWGG	1 cut(s)	2235
EcoT38I	GRGCYC	1 cut(s)	2463
ErhI	CCWWGG	1 cut(s)	2235
FalI	AAGNNNNNCTT	4 cut(s)	1077, 1109, 2283, 2315
FaqI	GGGAC	2 cut(s)	415, 1575
FauI	CCCGC	1 cut(s)	2573
FauNDI	CATATG	3 cut(s)	367, 613, 649
FbaI	TGATCA	2 cut(s)	592, 2746
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	8 cut(s)	404, 635, 1127, 1560, 2336, 2468, 2473, 2708
FriOI	GRGCYC	1 cut(s)	2463
FspBI	CTAG	8 cut(s)	687, 821, 851, 1154, 1601, 1628, 1779, 2079
GlaI	GCGC	2 cut(s)	1011, 1218
GsaI	CCCAGC	1 cut(s)	1749
GsuI	CTGGAG	4 cut(s)	701, 1365, 1889, 2184
HaeII	RGCGCY	1 cut(s)	1013
HaeIII	GGCC	6 cut(s)	182, 534, 1338, 2313, 2461, 2691
HgaI	GACGC	4 cut(s)	21, 128, 926, 1439
HhaI	GCGC	2 cut(s)	1012, 1219
Hin1I	GRCGYC	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	1010, 1217
HinP1I	GCGC	2 cut(s)	1010, 1217
HincII	GTYRAC	4 cut(s)	195, 1425, 2131, 2521
HindII	GTYRAC	4 cut(s)	195, 1425, 2131, 2521
HindIII	AAGCTT	1 cut(s)	2417
HinfI	GANTC	8 cut(s)	82, 185, 886, 1702, 1923, 2132, 2197, 2411
HpaI	GTTAAC	1 cut(s)	1425
HphI	GGTGA	6 cut(s)	27, 55, 143, 1852, 1997, 2756
Hpy166II	GTNNAC	6 cut(s)	195, 1425, 1696, 2131, 2521, 2701
Hpy188I	TCNGA	9 cut(s)	47, 118, 418, 931, 1301, 1312, 1533, 2008, 2724
Hpy8I	GTNNAC	6 cut(s)	195, 1425, 1696, 2131, 2521, 2701
Hpy99I	CGWCG	3 cut(s)	102, 942, 1458
HpyAV	CCTTC	9 cut(s)	30, 241, 307, 970, 1307, 1551, 2579, 2649, 2681
HpyCH4IV	ACGT	3 cut(s)	835, 1144, 1804
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 268, 826, 1368, 1859, 2231, 2348
HpyF3I	CTNAG	9 cut(s)	417, 668, 723, 1094, 1298, 1662, 2005, 2268, 2451
HpySE526I	ACGT	3 cut(s)	835, 1144, 1804
Hsp92I	GRCGYC	1 cut(s)	32
HspAI	GCGC	2 cut(s)	1010, 1217
Ksp22I	TGATCA	2 cut(s)	592, 2746
KspAI	GTTAAC	1 cut(s)	1425
LguI	GCTCTTC	3 cut(s)	810, 1083, 1860
LmnI	GCTCC	4 cut(s)	1594, 1961, 2294, 2665
Lsp1109I	GCAGC	9 cut(s)	344, 757, 970, 1117, 1445, 1862, 1921, 1976, 2615
LweI	GCATC	4 cut(s)	902, 1105, 1459, 1837
MaeI	CTAG	8 cut(s)	687, 821, 851, 1154, 1601, 1628, 1779, 2079
MaeII	ACGT	3 cut(s)	835, 1144, 1804
MaeIII	GTNAC	5 cut(s)	33, 577, 1840, 2305, 2548
MfeI	CAATTG	3 cut(s)	1374, 1650, 2574
MflI	RGATCY	4 cut(s)	316, 571, 1603, 2565
MhlI	GDGCHC	4 cut(s)	1698, 2299, 2344, 2463
MlyI	GAGTC	3 cut(s)	194, 2126, 2191
MmeI	TCCRAC	6 cut(s)	1092, 1270, 1572, 1698, 1730, 2185
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	2 cut(s)	1108, 1436
MspR9I	CCNGG	8 cut(s)	288, 399, 1177, 1344, 1479, 1883, 2560, 2693
MunI	CAATTG	3 cut(s)	1374, 1650, 2574
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	5 cut(s)	399, 1177, 1344, 1479, 2693
MwoI	GCNNNNNNNGC	7 cut(s)	75, 268, 826, 1368, 1859, 2231, 2348
NciI	CCSGG	3 cut(s)	288, 1883, 2560
NcoI	CCATGG	1 cut(s)	2235
NdeI	CATATG	3 cut(s)	367, 613, 649
NlaIV	GGNNCC	7 cut(s)	318, 403, 573, 1471, 1901, 2461, 2567
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	4 cut(s)	33, 577, 1840, 2305
NspI	RCATGY	5 cut(s)	301, 1385, 1568, 1815, 2051
PagI	TCATGA	1 cut(s)	2328
PaqCI	CACCTGC	1 cut(s)	1880
PasI	CCCWGGG	1 cut(s)	1176
PceI	AGGCCT	1 cut(s)	2691
PciI	ACATGT	1 cut(s)	2047
PciSI	GCTCTTC	3 cut(s)	810, 1083, 1860
PcsI	WCGNNNNNNNCGW	1 cut(s)	2748
PctI	GAATGC	1 cut(s)	504
PfeI	GAWTC	5 cut(s)	82, 886, 1702, 1923, 2411
PleI	GAGTC	3 cut(s)	193, 2126, 2191
PmaCI	CACGTG	1 cut(s)	1805
PmlI	CACGTG	1 cut(s)	1805
PpsI	GAGTC	3 cut(s)	193, 2126, 2191
Ppu21I	YACGTR	2 cut(s)	1145, 1805
PscI	ACATGT	1 cut(s)	2047
PshAI	GACNNNNGTC	1 cut(s)	2718
PsiI	TTATAA	1 cut(s)	635
Psp1406I	AACGTT	1 cut(s)	835
Psp6I	CCWGG	5 cut(s)	397, 1175, 1342, 1477, 2691
PspCI	CACGTG	1 cut(s)	1805
PspEI	GGTNACC	1 cut(s)	1840
PspFI	CCCAGC	1 cut(s)	1745
PspGI	CCWGG	5 cut(s)	397, 1175, 1342, 1477, 2691
PspN4I	GGNNCC	7 cut(s)	318, 403, 573, 1471, 1901, 2461, 2567
PspOMI	GGGCCC	1 cut(s)	2459
PspPI	GGNCC	4 cut(s)	402, 1337, 2459, 2460
PstI	CTGCAG	2 cut(s)	2020, 2440
PsuI	RGATCY	4 cut(s)	316, 571, 1603, 2565
PvuII	CAGCTG	2 cut(s)	1108, 1436
RsaI	GTAC	6 cut(s)	484, 810, 1491, 1681, 1751, 2476
RsaNI	GTAC	6 cut(s)	483, 809, 1490, 1680, 1750, 2475
RseI	CAYNNNNRTG	1 cut(s)	732
SalI	GTCGAC	1 cut(s)	193
SapI	GCTCTTC	3 cut(s)	810, 1083, 1860
Sau96I	GGNCC	4 cut(s)	402, 1337, 2459, 2460
SbfI	CCTGCAGG	1 cut(s)	2440
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	3 cut(s)	194, 2126, 2191
ScrFI	CCNGG	8 cut(s)	288, 399, 1177, 1344, 1479, 1883, 2560, 2693
SdaI	CCTGCAGG	1 cut(s)	2440
SduI	GDGCHC	4 cut(s)	1698, 2299, 2344, 2463
SfaNI	GCATC	4 cut(s)	902, 1105, 1459, 1837
SfcI	CTRYAG	5 cut(s)	338, 1413, 2016, 2436, 2716
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
SpeI	ACTAGT	1 cut(s)	686
Sse8387I	CCTGCAGG	1 cut(s)	2440
SseBI	AGGCCT	1 cut(s)	2691
SsiI	CCGC	5 cut(s)	29, 269, 1930, 2580, 2616
SspI	AATATT	1 cut(s)	2086
SspMI	CTAG	8 cut(s)	687, 821, 851, 1154, 1601, 1628, 1779, 2079
StuI	AGGCCT	1 cut(s)	2691
StyD4I	CCNGG	8 cut(s)	286, 397, 1175, 1342, 1477, 1881, 2558, 2691
StyI	CCWWGG	1 cut(s)	2235
TaiI	ACGT	3 cut(s)	838, 1147, 1807
TaqI	TCGA	8 cut(s)	100, 150, 194, 1230, 1405, 1456, 1536, 2369
TaqII	GACCGA	2 cut(s)	419, 1859
TatI	WGTACW	3 cut(s)	808, 1679, 2474
TauI	GCSGC	2 cut(s)	32, 271
TfiI	GAWTC	5 cut(s)	82, 886, 1702, 1923, 2411
TscAI	CASTG	4 cut(s)	285, 1195, 2362, 2470
TseFI	GTSAC	4 cut(s)	33, 577, 1840, 2305
TseI	GCWGC	9 cut(s)	332, 770, 958, 1105, 1433, 1850, 1909, 1964, 2603
Tsp45I	GTSAC	4 cut(s)	33, 577, 1840, 2305
TspRI	CASTG	4 cut(s)	285, 1195, 2362, 2470
VneI	GTGCAC	1 cut(s)	1694
VpaK11BI	GGWCC	1 cut(s)	402
XagI	CCTNNNNNAGG	3 cut(s)	386, 1347, 1661
XapI	RAATTY	3 cut(s)	1130, 1198, 1277
XbaI	TCTAGA	3 cut(s)	1153, 1600, 1627
XceI	RCATGY	5 cut(s)	301, 1385, 1568, 1815, 2051
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	8 cut(s)	687, 821, 851, 1154, 1601, 1628, 1779, 2079
ZrmI	AGTACT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.