Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001800

Physical Location & Seq

Genomic Coordinates Forward (+)

43226022 .. 43233321

Gene Structure 7300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGTTGAAGCTTCTCTCTTCTTCCTCCTCGTGCCTACAGGCCGGAGCCCACAGTTTGGGCCCTAAATTGGGCGTCCGGCCCGAAATGACTTCGCCGTTACTCCGAGTTCTGAACTCCCTCACCGGCCGGAATCGGCCCAATATGGCTCGCCGGGCGTTTTTTTGCTCGGATTCAAGCGACGGCTCCGATCAAGTTGTTGAGTTGGAGGCCAAGGCTGGGACTGAGGCTGAGGCTGAGGCTAAGGCTTCTTCAGCTATAGTGTCCACAAACCCTAGACCAGAAGATTATCTGACGGTTTTAGCTTTGCCATTGCCGCATAGACCACTCTTTCCAGGGTTCTACATGCCAATTTATGTGAAGGATCCGAAATTGCTAGCGGCTTTACAAGAAAGCCGGAAACGGCAAGCTCCATATGCTGGAGCTTTCCTGGTGAAGGATGAGCCGGGGACTGATCCAAGTTTGGTATCAGGTTCTGACACGGAGAAAAGCATATATGAATTAAAAGGGAAAGCCTTGTTTAATCGATTGCATGAAGTTGGTACGCTTGCCCAGATTTCTAGTATCCAAGGCGACCAAGTAGTGCTTATTGGTCATAGGCGACTTCGAATTACAGAGATGGTTGATGAGGATCCCCTGACTAATAAACCATATAACAAGGATGATGATGTCATAAAGGCTACGTCGTTTGAGGTTATAGCAACCTTAAGAGATGTTCTGAAGACTAGTTCTCTTTGGAGAGATCATGTTCAAACATACACTCAGCATATAGGTGACTTTAATTTTCCGAGGTTAGCAGATTTTGGAGCTGCAATATCTGGTGCAAACAAATTGCAGTGCCAGCAAGTGCTTGAGGAGCTAGACGTGTACAAACGTTTAAATCTTACACTAGAATTGGTGAAGAAAGAGATGGAAATCAGCAAGCTTCAGGAAACTATTGCAAAAGCGATTGAAGAGAAGATAAGCCGTGAGCAACGCCGCTACTTGTTGAATGAGCAGCTTAAAGCCATAAAGAAGGTAACTAGTGCATCACTTTTTAATGAGAACTTTGATGTTCTGCGGGCTGAAAAAATTCTTGATGAAGACCATTACGGATTAAACGATGTAAAGGAAAGGATATTGGAATTTATTGCTGTTGGAAAACTCAGAGGAATCTCACAAGGAAAAATCATTTGTCTCTCTGGCCCTCCTGGAGTTGGCAAAACCAGCATTGGTCGTTCAATTGCACGTGCATTGAATCGCAATTTCTTTCGATTTTCTGTTGGAGGGTTATCTGATGTCGCTGAAATCAAGGGACATCGCCGAACCTATATCGGTGCTATGCCAGGAAAGATGGTTCAATGCCTTAAAAATGTCGGAACAGCTAACCCTCTAGTTCTAATTGATGAGATCGACAAGGTAATATATTGCTGTTGGGAATTGGACATGCTGGTGATCCGGCTAGTGCTTTGTTTGGAGCTTCTTGATCCAGAGCAAAATGCTAATTTTCTAGATCATTATCTTGATGTTCCAATTGACCTAACAAAGGTTCTGTTTGTTTGTACAGCAAATGTTGTCGAGAATATACCAGCTCCTCTCTTGGATAGAATGGAGGTTGAAGTGACCAATGCAGCACTTCTTGCTCTCGTAGAAAATTATTGCCGAGAAGCAGGTGTTCGGAACCTCCAAAAGCACATAGAAAAGATCTACCGCAAGATAGCTTTGCAACTTGTTAGGCAAGGACAGTCAGATGAACCTGTAGGTGCTGGCGAAGTACGGTCTCCCATCAGTAAGACTGATCTCCCAGATGAACCTGCAGTTGTTGCAGATGCTGATGAAGCCAAAGTAGAAGATATTGCTGGCATTAAACAGACTGCAGATGAACCAGCAGAGGGTAAAGACCATGAACATAATACTGAAACCTCTGTGGGAAGTGTCACTATCCCAGATGAAACTGGAGCTTCTGCAGTTCAGGTTGCAGATACTGGTGAACTTATGCATTCAAAGGATGCAGAAGAAACTCAGAAAATTCAGGAGGGTGAAGCCAAAAAACCAGTTGAGAAAGTACTCCCAGTTGGAGTTGTCATGGGTCTTGCTTGGACTGCCATGGGTGGTTCCACCCTGTATATAGAGACCACTCAGGTCGAGGAAGGAGAGGGAAAAGGTGCGCTTCATGCTACTGGTCAACTTGGAGATGTTATGAAAGAAAGTACCCAAATTGCTCACACTGTGGCCAGAGCAATATTGCTGGAGAAAGAGCCAGAGAACACTTTCTTTGCCGATTCCAAGCTTCATCTCCATGTGCCGGCAGGGGCCACACCAAAGGATGGGCCAAGTGCTGGTTGCACCATGATCACATCCATGCTGTCCATTGCCATGAAGAAGCCTGTCAAGAAGGATTTAGCAATGACAGGGGAAGTAACACTAACTGGCAGGATCCTTCCAATTGGCGGGGTTAAGGAGAAGACAATAGCAGCAAGACGGAGTGGAGTGAAGACCATCATATTCCCTGAAGCCAACAGGAAGGATTTTGATGAGCTTGCCCCTAATGTAAAAGAAGGTCTTGATGTTCACTTTGTAGATGACTTCAATCAGATATTCGCTTTGGCTTTCAGTGATGACCAGAATCAAGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

871

Amino Acids

95.57

Weight (kDa)

5.51

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	99 - 301	2.1e-31	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	390 - 533	4.2e-18	ATPase family associated with various cellular activities (AAA)
Lon_lid	PF22667	526 - 573	4.1e-16	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	678 - 863	2.7e-71	Lon protease (S16) C-terminal proteolytic domain
ChlI	PF13541	711 - 832	6.8e-06	Subunit ChlI of Mg-chelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05790 AT3G05790 AT5G26860
fragaria_vesca	FvH4_6g07420 FvH4_7g03300 FvH4_7g03300 FvH4_7g03300
malus_domestica	MD02G1284000.v1.1 MD04G1193200.v1.1 MD07G1050000.v1.1 MD12G1206100.v1.1
prunus_persica	Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.2G038600_v2.0.a1 Prupe.6G313300_v2.0.a1
pyrus_communis	pycom02g24200 pycom04g17100 pycom07g03580 pycom12g19400
rosa_chinensis	RchiOBHm_Chr1g0325611 RchiOBHm_Chr3g0457021
rosa_laevigata	RLG00000025251 RLG00000030117
rosa_multiflora	Rmu_sc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324580 Rroxscaffold_6G00422260
rosa_rugosa	Rorug01G0053100 Rorug01G0053200 Rorug01G0053200 Rorug03G0018600 Rorug03G0018700
rosa_samantha	Rh1AG068800 Rh1CG069200 Rh1DG073900 Rh3AG078300 Rh3BG080200 Rh3CG080100 Rh3DG081900
rosa_wichuraiana	Rw1G005700 Rw3G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1637
Acc36I	ACCTGC	2 cut(s)	1637, 1798
AccB7I	CCANNNNNTGG	4 cut(s)	55, 416, 2303, 2315
AciI	CCGC	6 cut(s)	314, 377, 976, 1057, 1687, 2427
AclI	AACGTT	1 cut(s)	871
AclWI	GGATC	9 cut(s)	356, 369, 446, 623, 636, 1426, 1457, 2407, 2420
AcoI	YGGCCR	2 cut(s)	124, 2208
AcsI	RAATTY	3 cut(s)	1068, 1121, 2004
AcuI	CTGAAG	4 cut(s)	234, 737, 908, 2508
AcvI	CACGTG	1 cut(s)	1226
AcyI	GRCGYC	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	2206
AfaI	GTAC	6 cut(s)	541, 866, 1540, 1752, 2043, 2188
AflII	CTTAAG	1 cut(s)	703
AflIII	ACRYGT	1 cut(s)	861
AhlI	ACTAGT	2 cut(s)	722, 1019
AjiI	CACGTC	1 cut(s)	862
AjnI	CCWGG	4 cut(s)	331, 426, 1186, 1321
AloI	GAACNNNNNNTCC	2 cut(s)	1317, 1349
Alw26I	GTCTC	3 cut(s)	1178, 1761, 2102
AlwI	GGATC	9 cut(s)	356, 369, 446, 623, 636, 1426, 1457, 2407, 2420
AlwNI	CAGNNNCTG	3 cut(s)	473, 1808, 1961
ApaI	GGGCCC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	806, 994, 1607, 2450
ApoI	RAATTY	3 cut(s)	1068, 1121, 2004
Asp700I	GAANNNNTTC	2 cut(s)	1068, 2246
AspLEI	GCGC	1 cut(s)	2146
AspS9I	GGNCC	7 cut(s)	58, 59, 78, 135, 1181, 2289, 2306
AsuC2I	CCSGG	2 cut(s)	152, 444
AsuHPI	GGTGA	7 cut(s)	112, 442, 782, 907, 1441, 1976, 2027
AsuII	TTCGAA	1 cut(s)	604
AsuNHI	GCTAGC	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	2210
BamHI	GGATCC	3 cut(s)	361, 628, 2412
BanII	GRGCYC	2 cut(s)	49, 62
BauI	CACGAG	1 cut(s)	28
BbrPI	CACGTG	1 cut(s)	1226
BbsI	GAAGAC	4 cut(s)	725, 1086, 2447, 2477
BbvCI	CCTCAGC	2 cut(s)	228, 234
BbvI	GCAGC	4 cut(s)	793, 1006, 1619, 2462
BccI	CCATC	6 cut(s)	610, 901, 1324, 1769, 2297, 2483
BceAI	ACGGC	4 cut(s)	79, 196, 416, 948
BciT130I	CCWGG	4 cut(s)	333, 428, 1188, 1323
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	2328
BcnI	CCSGG	2 cut(s)	152, 444
BcoDI	GTCTC	3 cut(s)	1178, 1761, 2102
BcuI	ACTAGT	2 cut(s)	722, 1019
BfmI	CTRYAG	6 cut(s)	35, 255, 1734, 1791, 1851, 1941
BfrI	CTTAAG	1 cut(s)	703
BfuAI	ACCTGC	2 cut(s)	1637, 1798
BfuI	GTATCC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	1680
BisI	GCNGC	7 cut(s)	314, 378, 807, 976, 995, 1608, 2451
BlsI	GCNGC	7 cut(s)	315, 379, 808, 977, 996, 1609, 2452
BmcAI	AGTACT	1 cut(s)	2043
Bme1390I	CCNGG	6 cut(s)	152, 333, 428, 444, 1188, 1323
BmgBI	CACGTC	1 cut(s)	862
BmgT120I	GGNCC	7 cut(s)	58, 59, 78, 135, 1181, 2289, 2306
BmiI	GGNNCC	9 cut(s)	46, 60, 184, 363, 630, 1658, 2092, 2290, 2414
BmrFI	CCNGG	6 cut(s)	152, 333, 428, 444, 1188, 1323
BmrI	ACTGGG	1 cut(s)	2042
BmsI	GCATC	3 cut(s)	1034, 1795, 1975
BmtI	GCTAGC	1 cut(s)	377
BmuI	ACTGGG	1 cut(s)	2042
BpiI	GAAGAC	4 cut(s)	725, 1086, 2447, 2477
BpmI	CTGGAG	4 cut(s)	438, 1209, 1953, 2246
Bpu10I	CCTNAGC	3 cut(s)	228, 234, 240
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	869
BpuMI	CCSGG	2 cut(s)	152, 444
Bsa29I	ATCGAT	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	1226
BsaBI	GATNNNNATC	3 cut(s)	627, 911, 1494
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	2 cut(s)	1761, 2102
BsaJI	CCNNGG	6 cut(s)	210, 332, 443, 565, 785, 2082
Bse118I	RCCGGY	2 cut(s)	122, 2281
Bse1I	ACTGG	6 cut(s)	1936, 1966, 2030, 2048, 2161, 2410
Bse3DI	GCAATG	3 cut(s)	308, 2346, 2388
Bse8I	GATNNNNATC	3 cut(s)	627, 911, 1494
BseBI	CCWGG	4 cut(s)	333, 428, 1188, 1323
BseCI	ATCGAT	1 cut(s)	523
BseDI	CCNNGG	6 cut(s)	210, 332, 443, 565, 785, 2082
BseGI	GGATG	5 cut(s)	442, 664, 1990, 2308, 2333
BseJI	GATNNNNATC	3 cut(s)	627, 911, 1494
BseMI	GCAATG	3 cut(s)	308, 2346, 2388
BseMII	CTCAG	7 cut(s)	213, 219, 225, 773, 1156, 2012, 2129
BseNI	ACTGG	6 cut(s)	1936, 1966, 2030, 2048, 2161, 2410
BseRI	GAGGAG	3 cut(s)	16, 866, 1560
BseSI	GKGCMC	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	793, 1006, 1619, 2462
BseYI	CCCAGC	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	523
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	9 cut(s)	42, 76, 123, 127, 151, 394, 443, 1435, 2282
BslFI	GGGAC	3 cut(s)	232, 460, 1305
BsmAI	GTCTC	3 cut(s)	1178, 1761, 2102
BsmFI	GGGAC	3 cut(s)	232, 460, 1305
BsmI	GAATGC	1 cut(s)	1975
Bso31I	GGTCTC	2 cut(s)	1761, 2102
Bsp119I	TTCGAA	1 cut(s)	604
Bsp120I	GGGCCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	49, 62
Bsp1407I	TGTACA	2 cut(s)	864, 1538
Bsp19I	CCATGG	1 cut(s)	2082
BspACI	CCGC	6 cut(s)	314, 377, 976, 1057, 1687, 2427
BspCNI	CTCAG	7 cut(s)	214, 220, 226, 772, 1155, 2011, 2128
BspDI	ATCGAT	1 cut(s)	523
BspLI	GGNNCC	9 cut(s)	46, 60, 184, 363, 630, 1658, 2092, 2290, 2414
BspMAI	CTGCAG	3 cut(s)	1795, 1855, 1945
BspMI	ACCTGC	2 cut(s)	1637, 1798
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	9 cut(s)	356, 369, 446, 623, 636, 1426, 1457, 2407, 2420
BspT104I	TTCGAA	1 cut(s)	604
BspTI	CTTAAG	1 cut(s)	703
BspTNI	GGTCTC	2 cut(s)	1761, 2102
BsrDI	GCAATG	3 cut(s)	308, 2346, 2388
BsrFI	RCCGGY	2 cut(s)	122, 2281
BsrGI	TGTACA	2 cut(s)	864, 1538
BsrI	ACTGG	6 cut(s)	1936, 1966, 2030, 2048, 2161, 2410
BssAI	RCCGGY	2 cut(s)	122, 2281
BssECI	CCNNGG	6 cut(s)	210, 332, 443, 565, 785, 2082
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	3 cut(s)	210, 565, 2082
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	4 cut(s)	333, 428, 1188, 1323
Bst4CI	ACNGT	5 cut(s)	53, 295, 1722, 1755, 2206
Bst6I	CTCTTC	2 cut(s)	22, 945
BstACI	GRCGYC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	703
BstAPI	GCANNNNNTGC	2 cut(s)	1616, 1799
BstAUI	TGTACA	2 cut(s)	864, 1538
BstBAI	YACGTR	1 cut(s)	1226
BstBI	TTCGAA	1 cut(s)	604
BstDEI	CTNAG	8 cut(s)	222, 228, 234, 240, 759, 1142, 1998, 2115
BstDSI	CCRYGG	1 cut(s)	2082
BstENI	CCTNNNNNAGG	2 cut(s)	431, 1520
BstF5I	GGATG	5 cut(s)	442, 664, 1990, 2308, 2333
BstHHI	GCGC	1 cut(s)	2146
BstMAI	GTCTC	3 cut(s)	1178, 1761, 2102
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	4 cut(s)	333, 428, 1188, 1323
BstNSI	RCATGY	2 cut(s)	346, 1426
BstSCI	CCNGG	6 cut(s)	150, 331, 426, 442, 1186, 1321
BstSFI	CTRYAG	6 cut(s)	35, 255, 1734, 1791, 1851, 1941
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	793, 1006, 1619, 2462
BstV2I	GAAGAC	4 cut(s)	725, 1086, 2447, 2477
BstX2I	RGATCY	4 cut(s)	361, 628, 1680, 2412
BstYI	RGATCY	4 cut(s)	361, 628, 1680, 2412
BstZI	CGGCCG	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	572
BsuTUI	ATCGAT	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	2082
BtgZI	GCGATG	1 cut(s)	1280
BtrI	CACGTC	1 cut(s)	862
BtsCI	GGATG	5 cut(s)	442, 664, 1990, 2308, 2333
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	3 cut(s)	839, 2202, 2596
BveI	ACCTGC	2 cut(s)	1637, 1798
CaiI	CAGNNNCTG	3 cut(s)	473, 1808, 1961
CfoI	GCGC	1 cut(s)	2146
Cfr10I	RCCGGY	2 cut(s)	122, 2281
Cfr13I	GGNCC	7 cut(s)	58, 59, 78, 135, 1181, 2289, 2306
ClaI	ATCGAT	1 cut(s)	523
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	6 cut(s)	540, 865, 1539, 1751, 2042, 2187
CviQI	GTAC	6 cut(s)	540, 865, 1539, 1751, 2042, 2187
DdeI	CTNAG	8 cut(s)	222, 228, 234, 240, 759, 1142, 1998, 2115
DraI	TTTAAA	1 cut(s)	876
DraIII	CACNNNGTG	1 cut(s)	2206
EaeI	YGGCCR	2 cut(s)	124, 2208
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	22, 945
EarI	CTCTTC	2 cut(s)	22, 945
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	3 cut(s)	210, 565, 2082
Eco24I	GRGCYC	2 cut(s)	49, 62
Eco31I	GGTCTC	2 cut(s)	1761, 2102
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	4 cut(s)	234, 737, 908, 2508
Eco72I	CACGTG	1 cut(s)	1226
EcoNI	CCTNNNNNAGG	2 cut(s)	431, 1520
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	4 cut(s)	331, 426, 1186, 1321
EcoT14I	CCWWGG	3 cut(s)	210, 565, 2082
EcoT22I	ATGCAT	1 cut(s)	1977
EcoT38I	GRGCYC	2 cut(s)	49, 62
ErhI	CCWWGG	3 cut(s)	210, 565, 2082
FalI	AAGNNNNNCTT	6 cut(s)	567, 599, 2130, 2162, 2523, 2555
FaqI	GGGAC	3 cut(s)	232, 460, 1305
FauI	CCCGC	2 cut(s)	1050, 2420
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	2328
Fnu4HI	GCNGC	7 cut(s)	314, 378, 807, 976, 995, 1608, 2451
FokI	GGATG	5 cut(s)	449, 671, 1997, 2315, 2320
FriOI	GRGCYC	2 cut(s)	49, 62
Fsp4HI	GCNGC	7 cut(s)	314, 378, 807, 976, 995, 1608, 2451
GlaI	GCGC	1 cut(s)	2145
GluI	GCNGC	7 cut(s)	314, 378, 807, 976, 995, 1608, 2451
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	4 cut(s)	438, 1209, 1953, 2246
HapII	CCGG	9 cut(s)	42, 76, 123, 127, 151, 394, 443, 1435, 2282
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	2146
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	2144
HinP1I	GCGC	1 cut(s)	2144
HincII	GTYRAC	1 cut(s)	2162
HindII	GTYRAC	1 cut(s)	2162
HindIII	AAGCTT	3 cut(s)	8, 920, 2264
HinfI	GANTC	6 cut(s)	130, 170, 1149, 1234, 2258, 2602
HpaII	CCGG	9 cut(s)	42, 76, 123, 127, 151, 394, 443, 1435, 2282
HphI	GGTGA	7 cut(s)	112, 442, 782, 907, 1441, 1976, 2027
Hpy166II	GTNNAC	5 cut(s)	264, 865, 1967, 2162, 2548
Hpy8I	GTNNAC	5 cut(s)	264, 865, 1967, 2162, 2548
Hpy99I	CGWCG	2 cut(s)	182, 685
HpyAV	CCTTC	8 cut(s)	352, 427, 1006, 2120, 2365, 2426, 2494, 2528
HpyCH4III	ACNGT	5 cut(s)	53, 295, 1722, 1755, 2206
HpyCH4IV	ACGT	4 cut(s)	680, 861, 871, 1225
HpyF3I	CTNAG	8 cut(s)	222, 228, 234, 240, 759, 1142, 1998, 2115
HpySE526I	ACGT	4 cut(s)	680, 861, 871, 1225
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	1 cut(s)	2144
KroI	GCCGGC	1 cut(s)	2281
KroNI	GCCGGC	1 cut(s)	2283
Ksp22I	TGATCA	1 cut(s)	2328
LmnI	GCTCC	9 cut(s)	44, 188, 412, 419, 803, 853, 1453, 1573, 1934
Lsp1109I	GCAGC	4 cut(s)	793, 1006, 1619, 2462
LweI	GCATC	3 cut(s)	1034, 1795, 1975
MaeII	ACGT	4 cut(s)	680, 861, 871, 1225
MaeIII	GTNAC	6 cut(s)	96, 770, 1015, 1597, 1912, 2395
MfeI	CAATTG	3 cut(s)	1218, 1509, 2421
MflI	RGATCY	4 cut(s)	361, 628, 1680, 2412
MhlI	GDGCHC	2 cut(s)	49, 62
MlsI	TGGCCA	1 cut(s)	2210
MluNI	TGGCCA	1 cut(s)	2210
MmeI	TCCRAC	5 cut(s)	183, 1114, 1240, 1333, 2032
Mox20I	TGGCCA	1 cut(s)	2210
Mph1103I	ATGCAT	1 cut(s)	1977
MroNI	GCCGGC	1 cut(s)	2281
MroXI	GAANNNNTTC	2 cut(s)	1068, 2246
MscI	TGGCCA	1 cut(s)	2210
MslI	CAYNNNNRTG	5 cut(s)	768, 1427, 2274, 2336, 2351
Msp20I	TGGCCA	1 cut(s)	2210
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	9 cut(s)	42, 76, 123, 127, 151, 394, 443, 1435, 2282
MspR9I	CCNGG	6 cut(s)	152, 333, 428, 444, 1188, 1323
MunI	CAATTG	3 cut(s)	1218, 1509, 2421
Mva1269I	GAATGC	1 cut(s)	1975
MvaI	CCWGG	4 cut(s)	333, 428, 1188, 1323
NaeI	GCCGGC	1 cut(s)	2283
NciI	CCSGG	2 cut(s)	152, 444
NcoI	CCATGG	1 cut(s)	2082
NdeI	CATATG	1 cut(s)	412
NgoMIV	GCCGGC	1 cut(s)	2281
NheI	GCTAGC	1 cut(s)	373
NlaIV	GGNNCC	9 cut(s)	46, 60, 184, 363, 630, 1658, 2092, 2290, 2414
NmeAIII	GCCGAG	1 cut(s)	1664
NmuCI	GTSAC	3 cut(s)	770, 1597, 1912
NsiI	ATGCAT	1 cut(s)	1977
NspI	RCATGY	2 cut(s)	346, 1426
NspV	TTCGAA	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	1637
PcsI	WCGNNNNNNNCGW	1 cut(s)	1095
PctI	GAATGC	1 cut(s)	1975
PdiI	GCCGGC	1 cut(s)	2283
PdmI	GAANNNNTTC	2 cut(s)	1068, 2246
PfeI	GAWTC	6 cut(s)	130, 170, 1149, 1234, 2258, 2602
PflMI	CCANNNNNTGG	4 cut(s)	55, 416, 2303, 2315
PfoI	TCCNGGA	1 cut(s)	1186
PkrI	GCNGC	7 cut(s)	315, 379, 808, 977, 996, 1609, 2452
PmaCI	CACGTG	1 cut(s)	1226
PmlI	CACGTG	1 cut(s)	1226
Ppu21I	YACGTR	1 cut(s)	1226
Psp1406I	AACGTT	1 cut(s)	871
Psp6I	CCWGG	4 cut(s)	331, 426, 1186, 1321
PspCI	CACGTG	1 cut(s)	1226
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	4 cut(s)	331, 426, 1186, 1321
PspN4I	GGNNCC	9 cut(s)	46, 60, 184, 363, 630, 1658, 2092, 2290, 2414
PspOMI	GGGCCC	1 cut(s)	58
PspPI	GGNCC	7 cut(s)	58, 59, 78, 135, 1181, 2289, 2306
PstI	CTGCAG	3 cut(s)	1795, 1855, 1945
PstNI	CAGNNNCTG	3 cut(s)	473, 1808, 1961
PsuI	RGATCY	4 cut(s)	361, 628, 1680, 2412
RsaI	GTAC	6 cut(s)	541, 866, 1540, 1752, 2043, 2188
RsaNI	GTAC	6 cut(s)	540, 865, 1539, 1751, 2042, 2187
RseI	CAYNNNNRTG	5 cut(s)	768, 1427, 2274, 2336, 2351
SatI	GCNGC	7 cut(s)	314, 378, 807, 976, 995, 1608, 2451
Sau96I	GGNCC	7 cut(s)	58, 59, 78, 135, 1181, 2289, 2306
ScaI	AGTACT	1 cut(s)	2043
ScrFI	CCNGG	6 cut(s)	152, 333, 428, 444, 1188, 1323
SduI	GDGCHC	2 cut(s)	49, 62
SfaNI	GCATC	3 cut(s)	1034, 1795, 1975
SfcI	CTRYAG	6 cut(s)	35, 255, 1734, 1791, 1851, 1941
SfuI	TTCGAA	1 cut(s)	604
SmiMI	CAYNNNNRTG	5 cut(s)	768, 1427, 2274, 2336, 2351
SmlI	CTYRAG	2 cut(s)	703, 848
SmoI	CTYRAG	2 cut(s)	703, 848
SpeI	ACTAGT	2 cut(s)	722, 1019
SsiI	CCGC	6 cut(s)	314, 377, 976, 1057, 1687, 2427
SspI	AATATT	1 cut(s)	2220
StyD4I	CCNGG	6 cut(s)	150, 331, 426, 442, 1186, 1321
StyI	CCWWGG	3 cut(s)	210, 565, 2082
TaaI	ACNGT	5 cut(s)	53, 295, 1722, 1755, 2206
TaiI	ACGT	4 cut(s)	683, 864, 874, 1228
TaqI	TCGA	6 cut(s)	523, 604, 1249, 1389, 1554, 2121
TatI	WGTACW	3 cut(s)	864, 1538, 2041
TauI	GCSGC	3 cut(s)	316, 380, 978
TfiI	GAWTC	6 cut(s)	130, 170, 1149, 1234, 2258, 2602
TscAI	CASTG	3 cut(s)	839, 2209, 2596
TseFI	GTSAC	3 cut(s)	770, 1597, 1912
TseI	GCWGC	4 cut(s)	806, 994, 1607, 2450
Tsp45I	GTSAC	3 cut(s)	770, 1597, 1912
TspGWI	ACGGA	3 cut(s)	494, 1104, 2473
TspRI	CASTG	3 cut(s)	839, 2209, 2596
Van91I	CCANNNNNTGG	4 cut(s)	55, 416, 2303, 2315
Vha464I	CTTAAG	1 cut(s)	703
XagI	CCTNNNNNAGG	2 cut(s)	431, 1520
XapI	RAATTY	3 cut(s)	1068, 1121, 2004
XbaI	TCTAGA	1 cut(s)	1486
XceI	RCATGY	2 cut(s)	346, 1426
XmnI	GAANNNNTTC	2 cut(s)	1068, 2246
ZrmI	AGTACT	1 cut(s)	2043
Zsp2I	ATGCAT	1 cut(s)	1977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.