ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 416, 1946 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 587 |
| Acc36I | ACCTGC | 3 cut(s) | 416, 1946, 2275 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2849 |
| AccII | CGCG | 1 cut(s) | 66 |
| AciI | CCGC | 8 cut(s) | 61, 64, 66, 172, 218, 242, 323, 1996 |
| AclI | AACGTT | 1 cut(s) | 901 |
| AcoI | YGGCCR | 2 cut(s) | 43, 128 |
| AcsI | RAATTY | 4 cut(s) | 1196, 1290, 1343, 2352 |
| AcuI | CTGAAG | 3 cut(s) | 26, 258, 686 |
| AcvI | CACGTG | 2 cut(s) | 1448, 1871 |
| AfaI | GTAC | 2 cut(s) | 1557, 1747 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 142, 425, 667, 1415, 1729, 2726, 2738, 2849 |
| AflII | CTTAAG | 1 cut(s) | 733 |
| AflIII | ACRYGT | 1 cut(s) | 1868 |
| AhlI | ACTAGT | 1 cut(s) | 752 |
| AjnI | CCWGG | 4 cut(s) | 340, 1241, 1408, 1543 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 191, 223 |
| Alw26I | GTCTC | 2 cut(s) | 1052, 1400 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 236, 482, 2051, 2297 |
| ApaI | GGGCCC | 1 cut(s) | 72 |
| ApeKI | GCWGC | 9 cut(s) | 174, 386, 836, 1171, 1916, 2042, 2084, 2177, 2873 |
| ApoI | RAATTY | 4 cut(s) | 1196, 1290, 1343, 2352 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2957, 2989 |
| AspLEI | GCGC | 1 cut(s) | 1285 |
| AspS9I | GGNCC | 8 cut(s) | 68, 69, 169, 222, 580, 1403, 2712, 2729 |
| AsuC2I | CCSGG | 1 cut(s) | 453 |
| AsuHPI | GGTGA | 5 cut(s) | 812, 1007, 1649, 1810, 2375 |
| AsuII | TTCGAA | 1 cut(s) | 613 |
| AvaII | GGWCC | 2 cut(s) | 169, 580 |
| BaeGI | GKGCMC | 2 cut(s) | 72, 2611 |
| BalI | TGGCCA | 1 cut(s) | 45 |
| BamHI | GGATCC | 3 cut(s) | 370, 637, 2835 |
| BanII | GRGCYC | 2 cut(s) | 72, 2566 |
| BbrPI | CACGTG | 2 cut(s) | 1448, 1871 |
| BbsI | GAAGAC | 6 cut(s) | 12, 246, 613, 1868, 2428, 2900 |
| BbvI | GCAGC | 9 cut(s) | 186, 398, 823, 1183, 1928, 2054, 2071, 2189, 2885 |
| BccI | CCATC | 7 cut(s) | 619, 669, 1546, 2242, 2720, 2906, 3011 |
| BceAI | ACGGC | 1 cut(s) | 1089 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2921, 2955 |
| BciT130I | CCWGG | 4 cut(s) | 342, 1243, 1410, 1545 |
| BciVI | GTATCC | 1 cut(s) | 2101 |
| BclI | TGATCA | 5 cut(s) | 187, 2053, 2200, 2458, 2751 |
| BcnI | CCSGG | 1 cut(s) | 453 |
| BcoDI | GTCTC | 2 cut(s) | 1052, 1400 |
| BcuI | ACTAGT | 1 cut(s) | 752 |
| BfaI | CTAG | 9 cut(s) | 117, 282, 465, 753, 1220, 1694, 1845, 2160, 2733 |
| BfmI | CTRYAG | 7 cut(s) | 1169, 1252, 1479, 2175, 2226, 2268, 2706 |
| BfrI | CTTAAG | 1 cut(s) | 733 |
| BfuAI | ACCTGC | 3 cut(s) | 416, 1946, 2275 |
| BfuI | GTATCC | 1 cut(s) | 2101 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 42 |
| BglII | AGATCT | 1 cut(s) | 1989 |
| Bme1390I | CCNGG | 5 cut(s) | 342, 453, 1243, 1410, 1545 |
| Bme18I | GGWCC | 2 cut(s) | 169, 580 |
| BmgT120I | GGNCC | 8 cut(s) | 68, 69, 169, 222, 580, 1403, 2712, 2729 |
| BmrFI | CCNGG | 5 cut(s) | 342, 453, 1243, 1410, 1545 |
| BmrI | ACTGGG | 2 cut(s) | 1058, 2838 |
| BmsI | GCATC | 5 cut(s) | 579, 1525, 1903, 2039, 2323 |
| BmuI | ACTGGG | 2 cut(s) | 1058, 2838 |
| BpiI | GAAGAC | 6 cut(s) | 12, 246, 613, 1868, 2428, 2900 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 68, 100, 729, 761 |
| BpmI | CTGGAG | 1 cut(s) | 1431 |
| Bpu14I | TTCGAA | 1 cut(s) | 613 |
| BpuEI | CTTGAG | 2 cut(s) | 425, 731 |
| BpuMI | CCSGG | 1 cut(s) | 453 |
| BsaAI | YACGTR | 2 cut(s) | 1448, 1871 |
| BsaBI | GATNNNNATC | 4 cut(s) | 941, 1302, 1805, 2652 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 236, 266, 2052, 2082 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 142, 425, 667, 1415, 1729, 2726, 2738, 2849 |
| Bse118I | RCCGGY | 1 cut(s) | 88 |
| Bse1I | ACTGG | 4 cut(s) | 1053, 1185, 2581, 2833 |
| Bse3DI | GCAATG | 5 cut(s) | 317, 869, 1839, 2203, 2811 |
| Bse8I | GATNNNNATC | 4 cut(s) | 941, 1302, 1805, 2652 |
| BseBI | CCWGG | 4 cut(s) | 342, 1243, 1410, 1545 |
| BseGI | GGATG | 6 cut(s) | 451, 570, 2338, 2731, 2756, 2986 |
| BseJI | GATNNNNATC | 4 cut(s) | 941, 1302, 1805, 2652 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 142, 425, 667, 1415, 1729, 2726, 2738, 2849 |
| BseMI | GCAATG | 5 cut(s) | 317, 869, 1839, 2203, 2811 |
| BseMII | CTCAG | 4 cut(s) | 803, 1378, 2337, 2549 |
| BseNI | ACTGG | 4 cut(s) | 1053, 1185, 2581, 2833 |
| BseRI | GAGGAG | 1 cut(s) | 2896 |
| BseSI | GKGCMC | 2 cut(s) | 72, 2611 |
| BseX3I | CGGCCG | 1 cut(s) | 128 |
| BseXI | GCAGC | 9 cut(s) | 186, 398, 823, 1183, 1928, 2054, 2071, 2189, 2885 |
| Bsh1236I | CGCG | 1 cut(s) | 66 |
| Bsh1285I | CGRYCG | 1 cut(s) | 131 |
| BsiEI | CGRYCG | 1 cut(s) | 131 |
| BsiSI | CCGG | 2 cut(s) | 89, 452 |
| BslFI | GGGAC | 4 cut(s) | 469, 593, 1641, 1862 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 142, 425, 667, 1415, 1729, 2726, 2738, 2849 |
| BsmAI | GTCTC | 2 cut(s) | 1052, 1400 |
| BsmFI | GGGAC | 4 cut(s) | 469, 593, 1641, 1862 |
| Bsp119I | TTCGAA | 1 cut(s) | 613 |
| Bsp120I | GGGCCC | 1 cut(s) | 68 |
| Bsp1286I | GDGCHC | 3 cut(s) | 72, 2566, 2611 |
| Bsp1407I | TGTACA | 1 cut(s) | 1745 |
| Bsp19I | CCATGG | 1 cut(s) | 2502 |
| BspACI | CCGC | 8 cut(s) | 61, 64, 66, 172, 218, 242, 323, 1996 |
| BspCNI | CTCAG | 4 cut(s) | 802, 1377, 2338, 2548 |
| BspFNI | CGCG | 1 cut(s) | 66 |
| BspHI | TCATGA | 1 cut(s) | 2203 |
| BspMAI | CTGCAG | 5 cut(s) | 1173, 2179, 2230, 2272, 2710 |
| BspMI | ACCTGC | 3 cut(s) | 416, 1946, 2275 |
| BspQI | GCTCTTC | 1 cut(s) | 1926 |
| BspT104I | TTCGAA | 1 cut(s) | 613 |
| BspTI | CTTAAG | 1 cut(s) | 733 |
| BsrDI | GCAATG | 5 cut(s) | 317, 869, 1839, 2203, 2811 |
| BsrFI | RCCGGY | 1 cut(s) | 88 |
| BsrGI | TGTACA | 1 cut(s) | 1745 |
| BsrI | ACTGG | 4 cut(s) | 1053, 1185, 2581, 2833 |
| BssAI | RCCGGY | 1 cut(s) | 88 |
| BssT1I | CCWWGG | 3 cut(s) | 574, 815, 2502 |
| Bst2UI | CCWGG | 4 cut(s) | 342, 1243, 1410, 1545 |
| Bst4CI | ACNGT | 6 cut(s) | 304, 649, 1256, 1460, 2380, 2626 |
| Bst6I | CTCTTC | 3 cut(s) | 876, 975, 1926 |
| BstAFI | CTTAAG | 1 cut(s) | 733 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2048 |
| BstAUI | TGTACA | 1 cut(s) | 1745 |
| BstBAI | YACGTR | 2 cut(s) | 1448, 1871 |
| BstBI | TTCGAA | 1 cut(s) | 613 |
| BstC8I | GCNNGC | 9 cut(s) | 47, 68, 81, 110, 148, 551, 555, 2082, 2940 |
| BstDEI | CTNAG | 4 cut(s) | 789, 1364, 2346, 2535 |
| BstDSI | CCRYGG | 3 cut(s) | 64, 2307, 2502 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 423, 1727 |
| BstF5I | GGATG | 6 cut(s) | 451, 570, 2338, 2731, 2756, 2986 |
| BstFNI | CGCG | 1 cut(s) | 66 |
| BstHHI | GCGC | 1 cut(s) | 1285 |
| BstMAI | GTCTC | 2 cut(s) | 1052, 1400 |
| BstMCI | CGRYCG | 1 cut(s) | 131 |
| BstNI | CCWGG | 4 cut(s) | 342, 1243, 1410, 1545 |
| BstNSI | RCATGY | 2 cut(s) | 355, 1634 |
| BstSCI | CCNGG | 5 cut(s) | 340, 451, 1241, 1408, 1543 |
| BstSFI | CTRYAG | 7 cut(s) | 1169, 1252, 1479, 2175, 2226, 2268, 2706 |
| BstSLI | GKGCMC | 2 cut(s) | 72, 2611 |
| BstUI | CGCG | 1 cut(s) | 66 |
| BstV1I | GCAGC | 9 cut(s) | 186, 398, 823, 1183, 1928, 2054, 2071, 2189, 2885 |
| BstV2I | GAAGAC | 6 cut(s) | 12, 246, 613, 1868, 2428, 2900 |
| BstX2I | RGATCY | 5 cut(s) | 370, 637, 1989, 2653, 2835 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 79 |
| BstYI | RGATCY | 5 cut(s) | 370, 637, 1989, 2653, 2835 |
| BstZI | CGGCCG | 1 cut(s) | 128 |
| BsuI | GTATCC | 1 cut(s) | 2101 |
| BtgI | CCRYGG | 3 cut(s) | 64, 2307, 2502 |
| BtgZI | GCGATG | 2 cut(s) | 1502, 2901 |
| BtsCI | GGATG | 6 cut(s) | 451, 570, 2338, 2731, 2756, 2986 |
| BtsIMutI | CAGTG | 5 cut(s) | 1261, 1821, 2574, 2622, 3019 |
| BveI | ACCTGC | 3 cut(s) | 416, 1946, 2275 |
| Cac8I | GCNNGC | 9 cut(s) | 47, 68, 81, 110, 148, 551, 555, 2082, 2940 |
| CaiI | CAGNNNCTG | 4 cut(s) | 236, 482, 2051, 2297 |
| CciI | TCATGA | 1 cut(s) | 2203 |
| CfoI | GCGC | 1 cut(s) | 1285 |
| Cfr10I | RCCGGY | 1 cut(s) | 88 |
| Cfr13I | GGNCC | 8 cut(s) | 68, 69, 169, 222, 580, 1403, 2712, 2729 |
| Cfr42I | CCGCGG | 1 cut(s) | 67 |
| CpoI | CGGWCCG | 1 cut(s) | 169 |
| CseI | GACGC | 1 cut(s) | 992 |
| Csp6I | GTAC | 2 cut(s) | 1556, 1746 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1740, 1775, 2521, 2556 |
| CspI | CGGWCCG | 1 cut(s) | 169 |
| CviQI | GTAC | 2 cut(s) | 1556, 1746 |
| DdeI | CTNAG | 4 cut(s) | 789, 1364, 2346, 2535 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 587 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 587 |
| EaeI | YGGCCR | 2 cut(s) | 43, 128 |
| EagI | CGGCCG | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 3 cut(s) | 876, 975, 1926 |
| EarI | CTCTTC | 3 cut(s) | 876, 975, 1926 |
| EciI | GGCGGA | 1 cut(s) | 50 |
| EclXI | CGGCCG | 1 cut(s) | 128 |
| Eco130I | CCWWGG | 3 cut(s) | 574, 815, 2502 |
| Eco147I | AGGCCT | 1 cut(s) | 2080 |
| Eco24I | GRGCYC | 2 cut(s) | 72, 2566 |
| Eco47I | GGWCC | 2 cut(s) | 169, 580 |
| Eco52I | CGGCCG | 1 cut(s) | 128 |
| Eco57I | CTGAAG | 3 cut(s) | 26, 258, 686 |
| Eco72I | CACGTG | 2 cut(s) | 1448, 1871 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 423, 1727 |
| EcoRII | CCWGG | 4 cut(s) | 340, 1241, 1408, 1543 |
| EcoT14I | CCWWGG | 3 cut(s) | 574, 815, 2502 |
| EcoT38I | GRGCYC | 2 cut(s) | 72, 2566 |
| ErhI | CCWWGG | 3 cut(s) | 574, 815, 2502 |
| FaqI | GGGAC | 4 cut(s) | 469, 593, 1641, 1862 |
| FauI | CCCGC | 2 cut(s) | 59, 211 |
| FbaI | TGATCA | 5 cut(s) | 187, 2053, 2200, 2458, 2751 |
| FokI | GGATG | 6 cut(s) | 458, 557, 2345, 2738, 2743, 2993 |
| FriOI | GRGCYC | 2 cut(s) | 72, 2566 |
| FspBI | CTAG | 9 cut(s) | 117, 282, 465, 753, 1220, 1694, 1845, 2160, 2733 |
| GlaI | GCGC | 1 cut(s) | 1284 |
| GsuI | CTGGAG | 1 cut(s) | 1431 |
| HapII | CCGG | 2 cut(s) | 89, 452 |
| HgaI | GACGC | 1 cut(s) | 992 |
| HhaI | GCGC | 1 cut(s) | 1285 |
| Hin6I | GCGC | 1 cut(s) | 1283 |
| HinP1I | GCGC | 1 cut(s) | 1283 |
| HincII | GTYRAC | 6 cut(s) | 123, 631, 658, 1230, 2398, 2582 |
| HindII | GTYRAC | 6 cut(s) | 123, 631, 658, 1230, 2398, 2582 |
| HindIII | AAGCTT | 3 cut(s) | 8, 1875, 2687 |
| HpaII | CCGG | 2 cut(s) | 89, 452 |
| HphI | GGTGA | 5 cut(s) | 812, 1007, 1649, 1810, 2375 |
| Hpy166II | GTNNAC | 8 cut(s) | 123, 273, 631, 658, 998, 1230, 2398, 2582 |
| Hpy8I | GTNNAC | 8 cut(s) | 123, 273, 631, 658, 998, 1230, 2398, 2582 |
| Hpy99I | CGWCG | 3 cut(s) | 31, 182, 1008 |
| HpyCH4III | ACNGT | 6 cut(s) | 304, 649, 1256, 1460, 2380, 2626 |
| HpyCH4IV | ACGT | 5 cut(s) | 901, 1447, 1870, 2449, 2967 |
| HpyF3I | CTNAG | 4 cut(s) | 789, 1364, 2346, 2535 |
| HpySE526I | ACGT | 5 cut(s) | 901, 1447, 1870, 2449, 2967 |
| HspAI | GCGC | 1 cut(s) | 1283 |
| Ksp22I | TGATCA | 5 cut(s) | 187, 2053, 2200, 2458, 2751 |
| KspI | CCGCGG | 1 cut(s) | 67 |
| LguI | GCTCTTC | 1 cut(s) | 1926 |
| LmnI | GCTCC | 7 cut(s) | 54, 421, 833, 2027, 2516, 2561, 2883 |
| Lsp1109I | GCAGC | 9 cut(s) | 186, 398, 823, 1183, 1928, 2054, 2071, 2189, 2885 |
| LweI | GCATC | 5 cut(s) | 579, 1525, 1903, 2039, 2323 |
| MaeI | CTAG | 9 cut(s) | 117, 282, 465, 753, 1220, 1694, 1845, 2160, 2733 |
| MaeII | ACGT | 5 cut(s) | 901, 1447, 1870, 2449, 2967 |
| MaeIII | GTNAC | 6 cut(s) | 1204, 1460, 1906, 2236, 2572, 2818 |
| MfeI | CAATTG | 4 cut(s) | 975, 1440, 2469, 2844 |
| MflI | RGATCY | 5 cut(s) | 370, 637, 1989, 2653, 2835 |
| MhlI | GDGCHC | 3 cut(s) | 72, 2566, 2611 |
| MlsI | TGGCCA | 1 cut(s) | 45 |
| MluNI | TGGCCA | 1 cut(s) | 45 |
| MlyI | GAGTC | 5 cut(s) | 118, 254, 968, 2393, 2458 |
| MmeI | TCCRAC | 3 cut(s) | 1158, 1336, 2121 |
| Mox20I | TGGCCA | 1 cut(s) | 45 |
| MscI | TGGCCA | 1 cut(s) | 45 |
| MseI | TTAA | 9 cut(s) | 734, 807, 1029, 1200, 1316, 1509, 1566, 1887, 2856 |
| MslI | CAYNNNNRTG | 4 cut(s) | 798, 1635, 2697, 2759 |
| Msp20I | TGGCCA | 1 cut(s) | 45 |
| MspA1I | CMGCKG | 3 cut(s) | 66, 1174, 2180 |
| MspCI | CTTAAG | 1 cut(s) | 733 |
| MspI | CCGG | 2 cut(s) | 89, 452 |
| MspR9I | CCNGG | 5 cut(s) | 342, 453, 1243, 1410, 1545 |
| MunI | CAATTG | 4 cut(s) | 975, 1440, 2469, 2844 |
| MvaI | CCWGG | 4 cut(s) | 342, 1243, 1410, 1545 |
| MvnI | CGCG | 1 cut(s) | 66 |
| NciI | CCSGG | 1 cut(s) | 453 |
| NcoI | CCATGG | 1 cut(s) | 2502 |
| NmeAIII | GCCGAG | 5 cut(s) | 84, 106, 122, 250, 1973 |
| NmuCI | GTSAC | 4 cut(s) | 1204, 1906, 2236, 2572 |
| NspI | RCATGY | 2 cut(s) | 355, 1634 |
| NspV | TTCGAA | 1 cut(s) | 613 |
| PagI | TCATGA | 1 cut(s) | 2203 |
| PaqCI | CACCTGC | 2 cut(s) | 416, 1946 |
| PasI | CCCWGGG | 1 cut(s) | 1242 |
| PceI | AGGCCT | 1 cut(s) | 2080 |
| PciSI | GCTCTTC | 1 cut(s) | 1926 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 23 |
| PfeI | GAWTC | 5 cut(s) | 952, 1371, 2167, 2183, 2312 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2849 |
| PleI | GAGTC | 5 cut(s) | 118, 253, 967, 2393, 2458 |
| PmaCI | CACGTG | 2 cut(s) | 1448, 1871 |
| PmlI | CACGTG | 2 cut(s) | 1448, 1871 |
| PpsI | GAGTC | 5 cut(s) | 118, 253, 967, 2393, 2458 |
| Ppu21I | YACGTR | 2 cut(s) | 1448, 1871 |
| Psp1406I | AACGTT | 1 cut(s) | 901 |
| Psp6I | CCWGG | 4 cut(s) | 340, 1241, 1408, 1543 |
| PspCI | CACGTG | 2 cut(s) | 1448, 1871 |
| PspGI | CCWGG | 4 cut(s) | 340, 1241, 1408, 1543 |
| PspOMI | GGGCCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 8 cut(s) | 68, 69, 169, 222, 580, 1403, 2712, 2729 |
| PstI | CTGCAG | 5 cut(s) | 1173, 2179, 2230, 2272, 2710 |
| PstNI | CAGNNNCTG | 4 cut(s) | 236, 482, 2051, 2297 |
| PsuI | RGATCY | 5 cut(s) | 370, 637, 1989, 2653, 2835 |
| PvuII | CAGCTG | 2 cut(s) | 1174, 2180 |
| RsaI | GTAC | 2 cut(s) | 1557, 1747 |
| RsaNI | GTAC | 2 cut(s) | 1556, 1746 |
| RseI | CAYNNNNRTG | 4 cut(s) | 798, 1635, 2697, 2759 |
| Rsr2I | CGGWCCG | 1 cut(s) | 169 |
| RsrII | CGGWCCG | 1 cut(s) | 169 |
| SacII | CCGCGG | 1 cut(s) | 67 |
| SapI | GCTCTTC | 1 cut(s) | 1926 |
| SaqAI | TTAA | 9 cut(s) | 734, 807, 1029, 1200, 1316, 1509, 1566, 1887, 2856 |
| Sau96I | GGNCC | 8 cut(s) | 68, 69, 169, 222, 580, 1403, 2712, 2729 |
| SbfI | CCTGCAGG | 1 cut(s) | 2710 |
| SchI | GAGTC | 5 cut(s) | 118, 254, 968, 2393, 2458 |
| ScrFI | CCNGG | 5 cut(s) | 342, 453, 1243, 1410, 1545 |
| SdaI | CCTGCAGG | 1 cut(s) | 2710 |
| SduI | GDGCHC | 3 cut(s) | 72, 2566, 2611 |
| SfaNI | GCATC | 5 cut(s) | 579, 1525, 1903, 2039, 2323 |
| SfcI | CTRYAG | 7 cut(s) | 1169, 1252, 1479, 2175, 2226, 2268, 2706 |
| Sfr303I | CCGCGG | 1 cut(s) | 67 |
| SfuI | TTCGAA | 1 cut(s) | 613 |
| SgrBI | CCGCGG | 1 cut(s) | 67 |
| SinI | GGWCC | 2 cut(s) | 169, 580 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 798, 1635, 2697, 2759 |
| SmlI | CTYRAG | 3 cut(s) | 440, 733, 746 |
| SmoI | CTYRAG | 3 cut(s) | 440, 733, 746 |
| SpeI | ACTAGT | 1 cut(s) | 752 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2710 |
| SseBI | AGGCCT | 1 cut(s) | 2080 |
| SsiI | CCGC | 8 cut(s) | 61, 64, 66, 172, 218, 242, 323, 1996 |
| SspMI | CTAG | 9 cut(s) | 117, 282, 465, 753, 1220, 1694, 1845, 2160, 2733 |
| StuI | AGGCCT | 1 cut(s) | 2080 |
| StyD4I | CCNGG | 5 cut(s) | 340, 451, 1241, 1408, 1543 |
| StyI | CCWWGG | 3 cut(s) | 574, 815, 2502 |
| TaaI | ACNGT | 6 cut(s) | 304, 649, 1256, 1460, 2380, 2626 |
| TaiI | ACGT | 5 cut(s) | 904, 1450, 1873, 2452, 2970 |
| TaqI | TCGA | 6 cut(s) | 403, 613, 1006, 1719, 2646, 2931 |
| TaqII | GACCGA | 1 cut(s) | 1925 |
| TatI | WGTACW | 1 cut(s) | 1745 |
| TauI | GCSGC | 2 cut(s) | 66, 325 |
| TfiI | GAWTC | 5 cut(s) | 952, 1371, 2167, 2183, 2312 |
| Tru1I | TTAA | 9 cut(s) | 734, 807, 1029, 1200, 1316, 1509, 1566, 1887, 2856 |
| Tru9I | TTAA | 9 cut(s) | 734, 807, 1029, 1200, 1316, 1509, 1566, 1887, 2856 |
| TscAI | CASTG | 5 cut(s) | 1261, 1828, 2581, 2629, 3019 |
| TseFI | GTSAC | 4 cut(s) | 1204, 1906, 2236, 2572 |
| TseI | GCWGC | 9 cut(s) | 174, 386, 836, 1171, 1916, 2042, 2084, 2177, 2873 |
| Tsp45I | GTSAC | 4 cut(s) | 1204, 1906, 2236, 2572 |
| TspGWI | ACGGA | 2 cut(s) | 86, 2758 |
| TspRI | CASTG | 5 cut(s) | 1261, 1828, 2581, 2629, 3019 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2849 |
| Vha464I | CTTAAG | 1 cut(s) | 733 |
| VpaK11BI | GGWCC | 2 cut(s) | 169, 580 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 423, 1727 |
| XapI | RAATTY | 4 cut(s) | 1196, 1290, 1343, 2352 |
| XbaI | TCTAGA | 1 cut(s) | 1693 |
| XceI | RCATGY | 2 cut(s) | 355, 1634 |
| XspI | CTAG | 9 cut(s) | 117, 282, 465, 753, 1220, 1694, 1845, 2160, 2733 |