RchiOBHm_Chr3g0457041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012318
Physical Location & Seq
Forward (+)
6296186 .. 6298443
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42381

Sequence Viewer

Length: 1044 bp
ATGTTGGAAGTCTTGACTTTTCACACAAACACGGCTTCAGAGATTCTTCCCTGTTGTTCCAAGCTTACCCAATTCCAATTCCAATTCAGAGTTCCCTTTACATTCCAAAATCCCATGGATTTCCAGATGAGCAGGATCCAAGTAGCGGCCTTCATTGCTGGCATCATCGTCCTCAGTATCACAGCTGAAAAATGTCGGCAGCTGGTTGGGGAAGAGCATTCGTCTCAGAGTGGGAAGTTTACAATTATGAACTGCTTTGATATGAGTTCTGGAACACTAGCTTGTGGGGTGAAAGAGGGTGTGAAACTATATGCCAACAACATCAGATCTGCTCATGTCGAGGCAGCAAGGCATAAAGCAATCGAAAGTGCTTTGGCTGATGCATTGTCACAGGGGATGGGTTCTAACGAAGCAGCCAAGCTAGCACAGAAAGAAGGAGCAAAGGCAGCAAAATTAGCAAAACGGCAAGCCAAGCGGATAATAGGTCCTATAATCTCATCTGGATGGGACTTTTCCGAAGCTATATACTACGGTGGTGCAGTGACAGAAGGGATCGTCAGGGGCACTGGCACCTTGTTTGGCACCTATGCTGGAGGCTTTCTAGGAGACCAAAGGCTTGGGAGAGTTGGTTATCTTGTGGGAAGTCAGTTGGGCAGTTGGGTAGGAGGTAGGATTGGATTGATGGTCTATGATGTGATTAGTGGAGTTAATTACATAATTAGATTTGGTATACCCGAAAGTAGTGAAGTTGGTGAAGCTCCTTCTTATGAAAGTTCTGATGACTCTTACGTTAGTGAAGCCCCTACATACACGAGCTCTGAAGATTCTTACATTAGTCAATTGGGCAGCTGGGTAAGAGGTAGGATTAAATTGATGGTCTATGATGTGATTTTTGGTATACCCGAAAGTAGTGAAGTTGGTGAAGCTCCTCCTTATGAAAGTTCTGATGACTCTTACGTCAGTGAAGCCCCTGCATACACGAGCTCTGAAGATTCTAACGTATATGAGTCTTCATACGAATCTTATTCCAATGAAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

37.58

Weight (kDa)

4.82

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56423 AT1G56423
fragaria_vesca FvH4_6g07440
malus_domestica MD04G1193100.v1.1 MD12G1206000.v1.1
prunus_persica Prupe.6G313200_v2.0.a1
pyrus_communis pycom04g08470 pycom04g17090 pycom12g19390
rosa_chinensis RchiOBHm_Chr3g0457041
rosa_laevigata RLG00000025249
rosa_multiflora Rmu_sc0000488.1_g000003
rosa_roxburghii Rroxscaffold_6G00422240
rosa_rugosa Rorug03G0018700
rosa_samantha Rh3AG078500 Rh3BG080300 Rh3CG080300 Rh3DG082100
rosa_wichuraiana Rw3G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 956
AccB1I GGYRCC 2 cut(s) 569, 581
AccI GTMKAC 2 cut(s) 730, 898
AciI CCGC 2 cut(s) 146, 475
AclWI GGATC 3 cut(s) 130, 143, 560
AcuI CTGAAG 3 cut(s) 21, 840, 1008
AfiI CCNNNNNNNGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
Alw21I GWGCWC 3 cut(s) 818, 986, 1041
Alw26I GTCTC 2 cut(s) 228, 600
AlwI GGATC 3 cut(s) 130, 143, 560
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 5 cut(s) 199, 344, 413, 446, 846
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 301, 764, 932
AsuNHI GCTAGC 1 cut(s) 421
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 566
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 2 cut(s) 569, 581
BanII GRGCYC 3 cut(s) 818, 986, 1041
BauI CACGAG 2 cut(s) 811, 979
BbsI GAAGAC 1 cut(s) 1002
Bbv12I GWGCWC 3 cut(s) 818, 986, 1041
BbvI GCAGC 5 cut(s) 211, 356, 425, 458, 858
BccI CCATC 4 cut(s) 391, 498, 676, 868
BceAI ACGGC 2 cut(s) 48, 479
BcoDI GTCTC 2 cut(s) 228, 600
BfaI CTAG 3 cut(s) 278, 422, 602
BglII AGATCT 1 cut(s) 326
BisI GCNGC 6 cut(s) 147, 200, 345, 414, 447, 847
BlsI GCNGC 6 cut(s) 148, 201, 346, 415, 448, 848
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 3 cut(s) 137, 571, 583
BmsI GCATC 2 cut(s) 171, 370
BmtI GCTAGC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 402, 509
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 187, 239
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 918
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 5 cut(s) 211, 356, 425, 458, 858
BseYI CCCAGC 1 cut(s) 849
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 2 cut(s) 569, 581
BsiHKAI GWGCWC 3 cut(s) 818, 986, 1041
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 228, 600
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 600
Bsp1286I GDGCHC 4 cut(s) 566, 818, 986, 1041
Bsp143I GATC 3 cut(s) 135, 326, 552
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 2 cut(s) 146, 475
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 186, 238
BspLI GGNNCC 3 cut(s) 137, 571, 583
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 3 cut(s) 130, 143, 560
BspQI GCTCTTC 2 cut(s) 207, 1029
BspT107I GGYRCC 2 cut(s) 569, 581
BspTNI GGTCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 135, 326, 552
BssNAI GTATAC 2 cut(s) 731, 899
BssSI CACGAG 2 cut(s) 811, 979
BssT1I CCWWGG 1 cut(s) 114
Bst1107I GTATAC 2 cut(s) 731, 899
Bst2BI CACGAG 2 cut(s) 811, 979
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 2 cut(s) 207, 1029
BstC8I GCNNGC 3 cut(s) 160, 423, 468
BstDEI CTNAG 2 cut(s) 173, 225
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 402, 509
BstKTI GATC 3 cut(s) 138, 329, 555
BstMAI GTCTC 2 cut(s) 228, 600
BstMBI GATC 3 cut(s) 135, 326, 552
BstMWI GCNNNNNNNGC 5 cut(s) 155, 422, 446, 455, 472
BstSLI GKGCMC 1 cut(s) 566
BstV1I GCAGC 5 cut(s) 211, 356, 425, 458, 858
BstV2I GAAGAC 1 cut(s) 1002
BstX2I RGATCY 2 cut(s) 135, 326
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 2 cut(s) 135, 326
BstZ17I GTATAC 2 cut(s) 731, 899
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 402, 509
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 546, 564, 967
Cac8I GCNNGC 3 cut(s) 160, 423, 468
Cfr13I GGNCC 1 cut(s) 485
CviAII CATG 2 cut(s) 115, 335
DdeI CTNAG 2 cut(s) 173, 225
DpnI GATC 3 cut(s) 137, 328, 554
DpnII GATC 3 cut(s) 135, 326, 552
DrdI GACNNNNNNGTC 1 cut(s) 956
DseDI GACNNNNNNGTC 1 cut(s) 956
Eam1104I CTCTTC 2 cut(s) 207, 1029
EarI CTCTTC 2 cut(s) 207, 1029
Ecl136II GAGCTC 3 cut(s) 816, 984, 1039
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 3 cut(s) 818, 986, 1041
Eco31I GGTCTC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 3 cut(s) 816, 984, 1039
Eco57I CTGAAG 3 cut(s) 21, 840, 1008
EcoICRI GAGCTC 3 cut(s) 816, 984, 1039
EcoO109I RGGNCCY 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 3 cut(s) 818, 986, 1041
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 2 cut(s) 118, 338
FaqI GGGAC 1 cut(s) 521
FatI CATG 2 cut(s) 114, 334
FblI GTMKAC 2 cut(s) 730, 898
Fnu4HI GCNGC 6 cut(s) 147, 200, 345, 414, 447, 847
FokI GGATG 2 cut(s) 409, 516
FriOI GRGCYC 3 cut(s) 818, 986, 1041
Fsp4HI GCNGC 6 cut(s) 147, 200, 345, 414, 447, 847
FspBI CTAG 3 cut(s) 278, 422, 602
GluI GCNGC 6 cut(s) 147, 200, 345, 414, 447, 847
GsaI CCCAGC 1 cut(s) 853
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 2 cut(s) 118, 338
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 7 cut(s) 43, 782, 824, 950, 992, 1007, 1019
HphI GGTGA 3 cut(s) 301, 764, 932
Hpy166II GTNNAC 3 cut(s) 240, 731, 899
Hpy188III TCNNGA 4 cut(s) 13, 124, 270, 501
Hpy8I GTNNAC 3 cut(s) 240, 731, 899
HpyAV CCTTC 4 cut(s) 160, 428, 542, 771
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 3 cut(s) 789, 957, 999
HpyCH4V TGCA 3 cut(s) 383, 539, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 422, 446, 455, 472
HpyF3I CTNAG 2 cut(s) 173, 225
HpySE526I ACGT 3 cut(s) 789, 957, 999
Hsp92II CATG 2 cut(s) 118, 338
Kzo9I GATC 3 cut(s) 135, 326, 552
LguI GCTCTTC 2 cut(s) 207, 1029
LmnI GCTCC 3 cut(s) 437, 763, 931
Lsp1109I GCAGC 5 cut(s) 211, 356, 425, 458, 858
LweI GCATC 2 cut(s) 171, 370
MaeI CTAG 3 cut(s) 278, 422, 602
MaeII ACGT 3 cut(s) 789, 957, 999
MaeIII GTNAC 2 cut(s) 387, 541
MalI GATC 3 cut(s) 137, 328, 554
MboI GATC 3 cut(s) 135, 326, 552
MboII GAAGA 5 cut(s) 38, 224, 833, 1001, 1002
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 2 cut(s) 135, 326
MhlI GDGCHC 4 cut(s) 566, 818, 986, 1041
MluCI AATT 9 cut(s) 71, 77, 83, 243, 452, 709, 717, 839, 869
MlyI GAGTC 3 cut(s) 776, 944, 1016
MnlI CCTC 7 cut(s) 182, 289, 334, 587, 659, 851, 939
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 2 cut(s) 708, 867
MslI CAYNNNNRTG 1 cut(s) 502
MspA1I CMGCKG 3 cut(s) 185, 202, 849
MunI CAATTG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 217
MwoI GCNNNNNNNGC 5 cut(s) 155, 422, 446, 455, 472
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 135, 326, 552
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 2 cut(s) 118, 338
NlaIV GGNNCC 3 cut(s) 137, 571, 583
NmuCI GTSAC 2 cut(s) 387, 541
NsiI ATGCAT 1 cut(s) 385
PciSI GCTCTTC 2 cut(s) 207, 1029
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 4 cut(s) 43, 824, 992, 1019
PkrI GCNGC 6 cut(s) 148, 201, 346, 415, 448, 848
PleI GAGTC 3 cut(s) 776, 944, 1015
PpsI GAGTC 3 cut(s) 776, 944, 1015
PpuMI RGGWCCY 1 cut(s) 485
Psp124BI GAGCTC 3 cut(s) 818, 986, 1041
Psp5II RGGWCCY 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 849
PspN4I GGNNCC 3 cut(s) 137, 571, 583
PspPI GGNCC 1 cut(s) 485
PspPPI RGGWCCY 1 cut(s) 485
PsuI RGATCY 2 cut(s) 135, 326
PvuII CAGCTG 3 cut(s) 185, 202, 849
RseI CAYNNNNRTG 1 cut(s) 502
SacI GAGCTC 3 cut(s) 818, 986, 1041
SapI GCTCTTC 2 cut(s) 207, 1029
SaqAI TTAA 2 cut(s) 708, 867
SatI GCNGC 6 cut(s) 147, 200, 345, 414, 447, 847
Sau3AI GATC 3 cut(s) 135, 326, 552
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 3 cut(s) 776, 944, 1016
SduI GDGCHC 4 cut(s) 566, 818, 986, 1041
SfaNI GCATC 2 cut(s) 171, 370
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 502
Sse9I AATT 9 cut(s) 71, 77, 83, 243, 452, 709, 717, 839, 869
SsiI CCGC 2 cut(s) 146, 475
SspMI CTAG 3 cut(s) 278, 422, 602
SstI GAGCTC 3 cut(s) 818, 986, 1041
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 3 cut(s) 792, 960, 1002
TaqI TCGA 2 cut(s) 339, 363
TasI AATT 9 cut(s) 71, 77, 83, 243, 452, 709, 717, 839, 869
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 4 cut(s) 43, 824, 992, 1019
Tru1I TTAA 2 cut(s) 708, 867
Tru9I TTAA 2 cut(s) 708, 867
TscAI CASTG 3 cut(s) 546, 571, 967
TseFI GTSAC 2 cut(s) 387, 541
TseI GCWGC 5 cut(s) 199, 344, 413, 446, 846
Tsp45I GTSAC 2 cut(s) 387, 541
TspDTI ATGAA 5 cut(s) 142, 263, 783, 951, 1002
TspRI CASTG 3 cut(s) 546, 571, 967
VpaK11BI GGWCC 1 cut(s) 485
XmiI GTMKAC 2 cut(s) 730, 898
XspI CTAG 3 cut(s) 278, 422, 602
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.