Prupe.6G313200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012318
Physical Location & Seq
Reverse (-)
28020758 .. 28022778
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G313200.1

Sequence Viewer

Length: 744 bp
ATGGATTTCCAGAAGAAAAGAATCCAATTAGTGGCCTTCATAGCTGGCATCATCGTTCTCAGTATCACAGCTGAAAAATGTCGGCAGTTGGTTGGGGAAAAATATGCATCTCGGAGTGGACAGTTTACATTCTTGAACTGCTTTGATATGAGTTCTGGAACACTAGCTTGTTCTGTGAAAGAGGGAGTGAAGCTCTATGTTAACAACATCAGAGCTTCCCATGTTGAGAGAATAAGGTATAAAGCACTTGAAAGTGCATTGGCTGATGCATTGTCACAGGGGATACCTGCTAAAGATGCAGCCAAACAAGCACAGAAAGCAGGAGCAAAGGCCGCGAAACTGGCAACTCGGCAAGCCAAGCGGATAATAGGTCCTATTATCTCTTCTGGATGGGACTTTTCTGAAGCTATATATTATGGTGGTGCAGTAACAGAAGGGACTGTTAGGGGCACTGGCACCTTGTTTGGCACCTATGCTGGAGGCTTTCTAGGAGAGCAAAGGCTTGGGAGATTTGGTTATCTTGTCGGAAGTCAATTGGGCAGTTGGGTAGGAGGTAGAATTGGATTGATGGTCTATGATGTGATTAATGGAGTCAATTACTTGCTCCAGTTTGGTCTTCCCGAAAATAGTGAAGTTCGTGAAACTTCAGCTTATGAAAGTTCTGAAGGTTCTGAAGCTGAAGCCTTTGAAGCTTCCAATACCTATGAGAGCTCTGAAACATATGAGCATTCTGAACTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

26.75

Weight (kDa)

7.65

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56423 AT1G56423
fragaria_vesca FvH4_6g07440
malus_domestica MD04G1193100.v1.1 MD12G1206000.v1.1
prunus_persica Prupe.6G313200_v2.0.a1
pyrus_communis pycom04g08470 pycom04g17090 pycom12g19390
rosa_chinensis RchiOBHm_Chr3g0457041
rosa_laevigata RLG00000025249
rosa_multiflora Rmu_sc0000488.1_g000003
rosa_roxburghii Rroxscaffold_6G00422240
rosa_rugosa Rorug03G0018700
rosa_samantha Rh3AG078500 Rh3BG080300 Rh3CG080300 Rh3DG082100
rosa_wichuraiana Rw3G006740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 2 cut(s) 455, 467
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 1 cut(s) 335
AciI CCGC 2 cut(s) 333, 361
AcuI CTGAAG 5 cut(s) 423, 630, 684, 693, 699
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 3 cut(s) 136, 251, 689
Alw21I GWGCWC 1 cut(s) 713
AoxI GGCC 2 cut(s) 33, 330
ApeKI GCWGC 1 cut(s) 299
AseI ATTAAT 1 cut(s) 585
AspS9I GGNCC 1 cut(s) 371
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 452
BanI GGYRCC 2 cut(s) 455, 467
BanII GRGCYC 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 384, 562
BciVI GTATCC 1 cut(s) 276
BfaI CTAG 2 cut(s) 164, 488
BfuAI ACCTGC 1 cut(s) 295
BfuI GTATCC 1 cut(s) 276
BisI GCNGC 2 cut(s) 300, 333
BlsI GCNGC 2 cut(s) 301, 334
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 457, 469
BmsI GCATC 4 cut(s) 57, 116, 256, 286
BpiI GAAGAC 1 cut(s) 608
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 2 cut(s) 498, 590
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 3 cut(s) 345, 457, 607
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 73, 728
BseNI ACTGG 3 cut(s) 345, 457, 607
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 2 cut(s) 35, 332
BshNI GGYRCC 2 cut(s) 455, 467
BsiHKAI GWGCWC 1 cut(s) 713
BslFI GGGAC 2 cut(s) 407, 451
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 407, 451
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 2 cut(s) 35, 332
Bsp1286I GDGCHC 2 cut(s) 452, 713
BspACI CCGC 2 cut(s) 333, 361
BspANI GGCC 2 cut(s) 35, 332
BspCNI CTCAG 2 cut(s) 72, 729
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 457, 469
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 2 cut(s) 455, 467
BsrI ACTGG 3 cut(s) 345, 457, 607
Bst4CI ACNGT 2 cut(s) 123, 442
Bst6I CTCTTC 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 46, 354
BstDEI CTNAG 2 cut(s) 59, 737
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 8 cut(s) 41, 296, 308, 317, 332, 341, 358, 689
BstSLI GKGCMC 1 cut(s) 452
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 608
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 35, 332
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 46, 354
Cfr13I GGNCC 1 cut(s) 371
CviAII CATG 1 cut(s) 221
DdeI CTNAG 2 cut(s) 59, 737
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 711
Eco24I GRGCYC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 5 cut(s) 423, 630, 684, 693, 699
EcoICRI GAGCTC 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 371
EcoT22I ATGCAT 2 cut(s) 109, 271
EcoT38I GRGCYC 1 cut(s) 713
FaeI CATG 1 cut(s) 224
FaqI GGGAC 2 cut(s) 407, 451
FatI CATG 1 cut(s) 220
FauNDI CATATG 1 cut(s) 721
Fnu4HI GCNGC 2 cut(s) 300, 333
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 2 cut(s) 300, 333
FspBI CTAG 2 cut(s) 164, 488
GluI GCNGC 2 cut(s) 300, 333
GsuI CTGGAG 2 cut(s) 498, 590
HaeIII GGCC 2 cut(s) 35, 332
Hin1II CATG 1 cut(s) 224
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 2 cut(s) 21, 591
HpaI GTTAAC 1 cut(s) 202
Hpy166II GTNNAC 3 cut(s) 119, 126, 202
Hpy188I TCNGA 8 cut(s) 114, 212, 403, 527, 664, 673, 715, 733
Hpy188III TCNNGA 6 cut(s) 10, 133, 156, 387, 620, 638
Hpy8I GTNNAC 3 cut(s) 119, 126, 202
HpyAV CCTTC 3 cut(s) 46, 428, 659
HpyCH4III ACNGT 2 cut(s) 123, 442
HpyCH4V TGCA 5 cut(s) 107, 257, 269, 299, 425
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 296, 308, 317, 332, 341, 358, 689
HpyF3I CTNAG 2 cut(s) 59, 737
Hsp92II CATG 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 202
LmnI GCTCC 2 cut(s) 323, 609
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 4 cut(s) 57, 116, 256, 286
MaeI CTAG 2 cut(s) 164, 488
MaeIII GTNAC 2 cut(s) 273, 427
MboII GAAGA 3 cut(s) 25, 375, 608
MfeI CAATTG 1 cut(s) 533
MhlI GDGCHC 2 cut(s) 452, 713
MluCI AATT 4 cut(s) 26, 533, 558, 595
MlyI GAGTC 1 cut(s) 600
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 4 cut(s) 175, 473, 545, 732
Mph1103I ATGCAT 2 cut(s) 109, 271
MseI TTAA 2 cut(s) 201, 585
MspA1I CMGCKG 1 cut(s) 71
MunI CAATTG 1 cut(s) 533
Mva1269I GAATGC 1 cut(s) 727
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 8 cut(s) 41, 296, 308, 317, 332, 341, 358, 689
NdeI CATATG 1 cut(s) 721
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 457, 469
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 273
NsiI ATGCAT 2 cut(s) 109, 271
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 2 cut(s) 301, 334
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PpuMI RGGWCCY 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 457, 469
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 713
SaqAI TTAA 2 cut(s) 201, 585
SatI GCNGC 2 cut(s) 300, 333
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 600
SduI GDGCHC 2 cut(s) 452, 713
SfaNI GCATC 4 cut(s) 57, 116, 256, 286
SinI GGWCC 1 cut(s) 371
Sse9I AATT 4 cut(s) 26, 533, 558, 595
SsiI CCGC 2 cut(s) 333, 361
SspMI CTAG 2 cut(s) 164, 488
SstI GAGCTC 1 cut(s) 713
TaaI ACNGT 2 cut(s) 123, 442
TasI AATT 4 cut(s) 26, 533, 558, 595
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 201, 585
Tru9I TTAA 2 cut(s) 201, 585
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 28, 669
TspRI CASTG 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 371
VspI ATTAAT 1 cut(s) 585
XspI CTAG 2 cut(s) 164, 488
Zsp2I ATGCAT 2 cut(s) 109, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.