AT1G56570

repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
21195644 .. 21199130
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56570.2

Sequence Viewer

Length: 1836 bp
ATGAGCATAACCAAACTTGCACGCTCCAATGCGTTTAAACCAATCCCAAACTTTGTCAGAAGCTCTCTACGCAACGCCGGCGTCGAATCAAGTCAAAACACAGAGTATCCTCCATATAAACCCAAGAAGCATCACATTTTAGCAACAAATCTAATCGTTTCATATTTCGAAAAAGGTTTAGTCGAAGAAGCACGCTCACTGTTCGACGAAATGCCTGATAGAGACGTAGTAGCTTGGACCGCAATGATCACTGGTTACGCTTCTTCCAACTACAATGCTCGTGCTTGGGAGTGTTTTCACGAGATGGTTAAGCAAGGAACAAGCCCGAATGAGTTCACGCTCTCGAGTGTTCTCAAGTCTTGTAGAAACATGAAGGTTTTGGCTTATGGTGCTTTGGTTCATGGAGTTGTGGTTAAACTTGGCATGGAAGGTTCTCTTTATGTTGACAATGCGATGATGAATATGTACGCCACTTGTTCTGTAACAATGGAGGCTGCTTGTTTGATTTTTCGGGATATTAAGGTGAAAAATGATGTTACTTGGACTACTCTAATCACCGGGTTTACGCATTTGGGTGATGGCATTGGCGGTTTAAAGATGTACAAGCAAATGTTGCTGGAGAATGCTGAAGTGACGCCTTACTGTATAACAATAGCGGTTAGAGCTTCCGCTTCGATTGATTCAGTTACAACCGGCAAGCAAATTCATGCGTCTGTGATTAAACGTGGGTTTCAGTCTAACCTCCCGGTGATGAACTCTATATTGGACTTGTATTGCAGGTGTGGTTATTTATCAGAAGCGAAACACTATTTCCATGAGATGGAAGATAAAGATTTAATCACATGGAACACTTTAATATCCGAGCTTGAGCGATCAGATAGTAGTGAAGCTCTGCTTATGTTTCAGCGGTTTGAATCGCAAGGCTTTGTGCCAAATTGTTACACTTTCACGAGTTTAGTTGCTGCTTGTGCCAATATAGCGGCATTGAACTGTGGTCAGCAACTTCATGGAAGGATTTTTAGAAGAGGGTTTAACAAGAACGTTGAGTTAGCTAATGCTTTGATCGATATGTATGCTAAATGCGGAAATATACCGGACTCTCAAAGAGTATTTGGTGAAATTGTAGATAGGAGGAATTTGGTGTCTTGGACTTCAATGATGATTGGGTATGGATCACATGGTTATGGAGCAGAAGCTGTTGAGCTTTTTGATAAAATGGTTAGTTCGGGTATTAGACCTGACCGGATTGTGTTCATGGCGGTTTTAAGTGCGTGTCGCCATGCTGGTTTAGTGGAGAAAGGATTGAAGTACTTTAATGTGATGGAAAGTGAGTATGGTATAAATCCAGATCGAGATATCTACAACTGTGTGGTGGATTTGCTTGGAAGAGCTGGGAAAATAGGTGAGGCTTATGAATTAGTTGAGAGAATGCCGTTTAAGCCAGACGAATCCACGTGGGGAGCGATTCTTGGGGCTTGTAAAGCGCATAAGCACAATGGATTGATAAGTAGATTAGCTGCAAGAAAAGTTATGGAGTTGAAACCAAAAATGGTGGGGACTTATGTGATGCTTTCATACATCTATGCAGCAGAAGGGAAGTGGGTCGATTTCGCGAGAGTGAGGAAGATGATGAGGATGATGGGGAACAAAAAAGAAGCCGGTATGAGCTGGATCCTGGTGGAAAATCAAGTTTTTAGCTTTGCCGTTAGCGATAAAATGTGTCCTAATGCGAGTTCCGTGTATTCAGTCTTGGGGTTACTGATAGAAGAGACTAGAGAAGCTGGATATGTTCCTGAATTAGACTCCTTAGTTAATGATCAAGAAGTCGGAACTTGA

Protein Analysis

611

Amino Acids

68.28

Weight (kDa)

7.5

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 74 - 121 9.3e-13 PPR repeat family
PPR_2 PF13041 278 - 325 7.4e-06 PPR repeat family
PPR_2 PF13041 379 - 425 1.2e-07 PPR repeat family
PPR PF01535 381 - 411 6.3e-08 PPR repeat
PPR_1 PF12854 446 - 477 5.8e-06 PPR repeat
E_motif PF20431 502 - 558 6.5e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014343)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 768
Acc36I ACCTGC 1 cut(s) 768
AccB7I CCANNNNNTGG 1 cut(s) 820
AccII CGCG 1 cut(s) 1613
AciI CCGC 8 cut(s) 240, 588, 656, 669, 907, 980, 1083, 1259
AclI AACGTT 1 cut(s) 1041
AclWI GGATC 3 cut(s) 1180, 1666, 1679
AcsI RAATTY 2 cut(s) 702, 1135
AcuI CTGAAG 1 cut(s) 648
AcvI CACGTG 1 cut(s) 1455
AcyI GRCGYC 2 cut(s) 81, 635
AfaI GTAC 3 cut(s) 467, 602, 1310
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 5 cut(s) 914, 988, 1155, 1306, 1540
AjnI CCWGG 1 cut(s) 1674
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
Alw26I GTCTC 2 cut(s) 216, 1763
AlwI GGATC 3 cut(s) 1180, 1666, 1679
AlwNI CAGNNNCTG 1 cut(s) 1196
Ama87I CYCGRG 1 cut(s) 343
ApeKI GCWGC 4 cut(s) 494, 962, 1517, 1586
ApoI RAATTY 2 cut(s) 702, 1135
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 1486
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 2 cut(s) 559, 746
AsuHPI GGTGA 6 cut(s) 535, 547, 587, 760, 1127, 1415
AsuII TTCGAA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 1671
BauI CACGAG 3 cut(s) 279, 299, 949
BbrPI CACGTG 1 cut(s) 1455
BbvI GCAGC 4 cut(s) 481, 949, 1504, 1598
BccI CCATC 5 cut(s) 298, 572, 814, 1315, 1633
BceAI ACGGC 2 cut(s) 1417, 1688
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 1 cut(s) 1676
BciVI GTATCC 1 cut(s) 117
BclI TGATCA 2 cut(s) 246, 1816
BcnI CCSGG 2 cut(s) 559, 746
BcoDI GTCTC 2 cut(s) 216, 1763
BfaI CTAG 1 cut(s) 1773
BfuAI ACCTGC 1 cut(s) 768
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 5 cut(s) 495, 963, 981, 1518, 1587
BlsI GCNGC 5 cut(s) 496, 964, 982, 1519, 1588
BmcAI AGTACT 1 cut(s) 1310
Bme1390I CCNGG 3 cut(s) 559, 746, 1676
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 1673
BmrFI CCNGG 3 cut(s) 559, 746, 1676
BmsI GCATC 2 cut(s) 139, 1557
BpmI CTGGAG 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 338, 887
BpuMI CCSGG 2 cut(s) 559, 746
Bsa29I ATCGAT 1 cut(s) 1065
BsaAI YACGTR 1 cut(s) 1455
BsaHI GRCGYC 2 cut(s) 81, 635
BsaWI WCCGGW 2 cut(s) 1093, 1242
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse118I RCCGGY 3 cut(s) 77, 692, 1658
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 1676
BseCI ATCGAT 1 cut(s) 1065
BseGI GGATG 1 cut(s) 1641
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 4 cut(s) 481, 949, 1504, 1598
BseYI CCCAGC 1 cut(s) 1391
Bsh1236I CGCG 1 cut(s) 1613
BshVI ATCGAT 1 cut(s) 1065
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 7 cut(s) 78, 558, 693, 746, 1094, 1243, 1659
BslFI GGGAC 1 cut(s) 1570
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 2 cut(s) 216, 1763
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 1570
BsmI GAATGC 2 cut(s) 628, 1434
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
Bsp68I TCGCGA 1 cut(s) 1613
BspACI CCGC 8 cut(s) 240, 588, 656, 669, 907, 980, 1083, 1259
BspDI ATCGAT 1 cut(s) 1065
BspFNI CGCG 1 cut(s) 1613
BspLI GGNNCC 1 cut(s) 1673
BspMI ACCTGC 1 cut(s) 768
BspPI GGATC 3 cut(s) 1180, 1666, 1679
BspQI GCTCTTC 1 cut(s) 1381
BspT104I TTCGAA 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 3 cut(s) 77, 692, 1658
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 3 cut(s) 77, 692, 1658
BssMI GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
BssNI GRCGYC 2 cut(s) 81, 635
BssSI CACGAG 3 cut(s) 279, 299, 949
Bst2BI CACGAG 3 cut(s) 279, 299, 949
Bst2UI CCWGG 1 cut(s) 1676
Bst4CI ACNGT 4 cut(s) 201, 644, 992, 1367
Bst6I CTCTTC 3 cut(s) 1018, 1381, 1761
BstACI GRCGYC 2 cut(s) 81, 635
BstAPI GCANNNNNTGC 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 1455
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 22, 79, 193, 698
BstDEI CTNAG 1 cut(s) 1807
BstF5I GGATG 1 cut(s) 1641
BstFNI CGCG 1 cut(s) 1613
BstHHI GCGC 1 cut(s) 1486
BstKTI GATC 7 cut(s) 249, 875, 1065, 1175, 1351, 1674, 1819
BstMAI GTCTC 2 cut(s) 216, 1763
BstMBI GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
BstNI CCWGG 1 cut(s) 1676
BstSCI CCNGG 3 cut(s) 557, 744, 1674
BstUI CGCG 1 cut(s) 1613
BstV1I GCAGC 4 cut(s) 481, 949, 1504, 1598
BstX2I RGATCY 1 cut(s) 1671
BstYI RGATCY 1 cut(s) 1671
Bsu15I ATCGAT 1 cut(s) 1065
BsuI GTATCC 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 1065
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 1 cut(s) 1641
BtsIMutI CAGTG 2 cut(s) 197, 249
BtuMI TCGCGA 1 cut(s) 1613
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 4 cut(s) 22, 79, 193, 698
CaiI CAGNNNCTG 1 cut(s) 1196
CfoI GCGC 1 cut(s) 1486
Cfr10I RCCGGY 3 cut(s) 77, 692, 1658
Cfr13I GGNCC 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 1065
CseI GACGC 3 cut(s) 70, 643, 699
Csp6I GTAC 3 cut(s) 466, 601, 1309
CspCI CAANNNNNGTGG 2 cut(s) 1533, 1568
CviQI GTAC 3 cut(s) 466, 601, 1309
DdeI CTNAG 1 cut(s) 1807
DpnI GATC 7 cut(s) 248, 874, 1064, 1174, 1350, 1673, 1818
DpnII GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
DraI TTTAAA 2 cut(s) 37, 594
Eam1104I CTCTTC 3 cut(s) 1018, 1381, 1761
EarI CTCTTC 3 cut(s) 1018, 1381, 1761
Eco32I GATATC 1 cut(s) 1357
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 648
Eco72I CACGTG 1 cut(s) 1455
Eco88I CYCGRG 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 1674
EcoRV GATATC 1 cut(s) 1357
Esp3I CGTCTC 1 cut(s) 216
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 879, 911
FaqI GGGAC 1 cut(s) 1570
FbaI TGATCA 2 cut(s) 246, 1816
Fnu4HI GCNGC 5 cut(s) 495, 963, 981, 1518, 1587
FokI GGATG 1 cut(s) 1648
Fsp4HI GCNGC 5 cut(s) 495, 963, 981, 1518, 1587
FspBI CTAG 1 cut(s) 1773
GlaI GCGC 1 cut(s) 1485
GluI GCNGC 5 cut(s) 495, 963, 981, 1518, 1587
GsaI CCCAGC 1 cut(s) 1395
GsuI CTGGAG 1 cut(s) 638
HapII CCGG 7 cut(s) 78, 558, 693, 746, 1094, 1243, 1659
HgaI GACGC 3 cut(s) 70, 643, 699
HhaI GCGC 1 cut(s) 1486
Hin1I GRCGYC 2 cut(s) 81, 635
Hin6I GCGC 1 cut(s) 1484
HinP1I GCGC 1 cut(s) 1484
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 7 cut(s) 86, 680, 914, 1097, 1448, 1465, 1802
HpaII CCGG 7 cut(s) 78, 558, 693, 746, 1094, 1243, 1659
HphI GGTGA 6 cut(s) 535, 547, 587, 760, 1127, 1415
Hpy166II GTNNAC 3 cut(s) 336, 445, 564
Hpy188I TCNGA 5 cut(s) 59, 796, 862, 877, 1829
Hpy188III TCNNGA 9 cut(s) 299, 343, 512, 949, 1346, 1352, 1612, 1793, 1820
Hpy8I GTNNAC 3 cut(s) 336, 445, 564
Hpy99I CGWCG 2 cut(s) 86, 209
HpyAV CCTTC 4 cut(s) 367, 422, 1005, 1586
HpyCH4III ACNGT 4 cut(s) 201, 644, 992, 1367
HpyCH4IV ACGT 4 cut(s) 225, 724, 1041, 1454
HpyCH4V TGCA 4 cut(s) 20, 777, 1520, 1586
HpyF3I CTNAG 1 cut(s) 1807
HpySE526I ACGT 4 cut(s) 225, 724, 1041, 1454
Hsp92I GRCGYC 2 cut(s) 81, 635
HspAI GCGC 1 cut(s) 1484
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Ksp22I TGATCA 2 cut(s) 246, 1816
Kzo9I GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
LguI GCTCTTC 1 cut(s) 1381
LmnI GCTCC 3 cut(s) 29, 1187, 1460
Lsp1109I GCAGC 4 cut(s) 481, 949, 1504, 1598
LweI GCATC 2 cut(s) 139, 1557
MaeI CTAG 1 cut(s) 1773
MaeII ACGT 4 cut(s) 225, 724, 1041, 1454
MaeIII GTNAC 7 cut(s) 254, 481, 535, 631, 685, 938, 1755
MalI GATC 7 cut(s) 248, 874, 1064, 1174, 1350, 1673, 1818
MboI GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
MboII GAAGA 7 cut(s) 197, 255, 836, 1035, 1398, 1636, 1778
MflI RGATCY 1 cut(s) 1671
MluCI AATT 6 cut(s) 702, 934, 1119, 1135, 1415, 1796
MlyI GAGTC 2 cut(s) 1091, 1796
MmeI TCCRAC 2 cut(s) 291, 1807
MnlI CCTC 8 cut(s) 120, 484, 752, 1019, 1125, 1399, 1614, 1626
MreI CGCCGGCG 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 332
MslI CAYNNNNRTG 2 cut(s) 573, 1182
MspA1I CMGCKG 1 cut(s) 907
MspI CCGG 7 cut(s) 78, 558, 693, 746, 1094, 1243, 1659
MspR9I CCNGG 3 cut(s) 559, 746, 1676
MssI GTTTAAAC 1 cut(s) 37
Mva1269I GAATGC 2 cut(s) 628, 1434
MvaI CCWGG 1 cut(s) 1676
MvnI CGCG 1 cut(s) 1613
NaeI GCCGGC 1 cut(s) 79
NciI CCSGG 2 cut(s) 559, 746
NdeII GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
NgoMIV GCCGGC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 1673
NmuCI GTSAC 1 cut(s) 631
NruI TCGCGA 1 cut(s) 1613
NspV TTCGAA 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 343
PaqCI CACCTGC 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 1381
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 1460
PctI GAATGC 2 cut(s) 628, 1434
PdiI GCCGGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 5 cut(s) 86, 680, 914, 1448, 1465
PflMI CCANNNNNTGG 1 cut(s) 820
PkrI GCNGC 5 cut(s) 496, 964, 982, 1519, 1588
PleI GAGTC 2 cut(s) 1091, 1796
PmaCI CACGTG 1 cut(s) 1455
PmeI GTTTAAAC 1 cut(s) 37
PmlI CACGTG 1 cut(s) 1455
PpsI GAGTC 2 cut(s) 1091, 1796
Ppu21I YACGTR 1 cut(s) 1455
Psp1406I AACGTT 1 cut(s) 1041
Psp6I CCWGG 1 cut(s) 1674
PspCI CACGTG 1 cut(s) 1455
PspFI CCCAGC 1 cut(s) 1391
PspGI CCWGG 1 cut(s) 1674
PspN4I GGNNCC 1 cut(s) 1673
PspPI GGNCC 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 1196
PsuI RGATCY 1 cut(s) 1671
RruI TCGCGA 1 cut(s) 1613
RsaI GTAC 3 cut(s) 467, 602, 1310
RsaNI GTAC 3 cut(s) 466, 601, 1309
RseI CAYNNNNRTG 2 cut(s) 573, 1182
SapI GCTCTTC 1 cut(s) 1381
SatI GCNGC 5 cut(s) 495, 963, 981, 1518, 1587
Sau3AI GATC 7 cut(s) 246, 872, 1062, 1172, 1348, 1671, 1816
Sau96I GGNCC 1 cut(s) 237
ScaI AGTACT 1 cut(s) 1310
SchI GAGTC 2 cut(s) 1091, 1796
ScrFI CCNGG 3 cut(s) 559, 746, 1676
SfaNI GCATC 2 cut(s) 139, 1557
Sfr274I CTCGAG 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 77
SinI GGWCC 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 2 cut(s) 573, 1182
SmlI CTYRAG 3 cut(s) 343, 353, 866
SmoI CTYRAG 3 cut(s) 343, 353, 866
Sse9I AATT 6 cut(s) 702, 934, 1119, 1135, 1415, 1796
SsiI CCGC 8 cut(s) 240, 588, 656, 669, 907, 980, 1083, 1259
SspMI CTAG 1 cut(s) 1773
StyD4I CCNGG 3 cut(s) 557, 744, 1674
TaaI ACNGT 4 cut(s) 201, 644, 992, 1367
TaiI ACGT 4 cut(s) 228, 727, 1044, 1457
TaqI TCGA 9 cut(s) 84, 168, 183, 204, 344, 674, 1065, 1351, 1605
TasI AATT 6 cut(s) 702, 934, 1119, 1135, 1415, 1796
TatI WGTACW 2 cut(s) 600, 1308
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 5 cut(s) 86, 680, 914, 1448, 1465
TscAI CASTG 2 cut(s) 204, 256
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 4 cut(s) 494, 962, 1517, 1586
Tsp45I GTSAC 1 cut(s) 631
TspGWI ACGGA 1 cut(s) 1726
TspRI CASTG 2 cut(s) 204, 256
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 2 cut(s) 702, 1135
XhoI CTCGAG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 1773
ZrmI AGTACT 1 cut(s) 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.