Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035246.1

Orthogroup ID

OG0014343

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1196

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035246.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1112 bp

atgacctcaagaaaactactacccagatcccacttcaaccccatcccacccataatcagaaactcacttcattggtcccaagaacccaccacccaatcaaacccaccttttttatcaaagggccccaacctcttagccacagacttaatcaagtcctactttgaaaagggctctatcaaagaggcacgtaaggtgttcgacgaaatgtctgagagagacgtggttacgtggactgccatgattgctgggtacacttcttgcagtcaccacagcactgcttgggctgtgttctgtgagatggtgagggttgagatagagccgaatgcttttacgttttcgagtgtgcttaaggcttgtaaaggaatgaaggctctttcttgtggtgcaatggttcatgggtcggcggttaagtatggcatgaagggatctatgtatgtggagaatgcccttatggacatgtatgctacttgttgtgttagcatggacaatgcatgcaaggtgtttaatgaccttcatgagaagaatgctgtgagttggactactttgattactggctacactcatagagatgatggctatggcgggcttcaagtttttcggaaaatgctgctggaggaagtggaaccgaaccctttcagcttttcaattgcgattagagcttgtgcttcgattggctcgcatgcttttggcaggcaaatacattcggcagtaattaagtatgggttcgagtctgatcttccggtcatgaattccatactggacatgtactgtaggtttggttgtttatcagaggcaaatcagtactttgatgaaatgagtaaaaaagatctgattacctggaacgccttaatttctggatatgaaagatcggatcctagggagtccctacgtatattttctcgtatggagttggaaggctttagtccgaattgcttcacattaactagcgttacagcggcctgtgctaacttggcagttttgaactgtggtgaacaagttcatggtggaatcatccgtagaggctttaacaagaacttggcattggctaatgcacttattgacatgtatgccaagtgtgggagcattactgactcgcacaaaatatttagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009451 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034284 GO:0034641 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0098542 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

370

Amino Acids

41.21

Weight (kDa)

7.52

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56570 AT1G56570
fragaria_vesca	FvH4_6g07860
prunus_persica	Prupe.6G310000_v2.0.a1
pyrus_communis	pycom04g16900
rosa_chinensis	RchiOBHm_Chr3g0457561
rosa_laevigata	RLG00000025210
rosa_multiflora	Rmu_co8283243.1_g000001 Rmu_sc0007404.1_g000004 Rmu_sc0035246.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421730
rosa_rugosa	Rorug03G0021400
rosa_samantha	Rh3AG082000 Rh3BG084200 Rh3CG084400 Rh3DG085700
rosa_wichuraiana	Rw3G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	404, 582, 956
AclWI	GGATC	4 cut(s)	21, 433, 866, 879
AcsI	RAATTY	1 cut(s)	748
AfaI	GTAC	3 cut(s)	251, 767, 803
AfiI	CCNNNNNNNGG	1 cut(s)	1077
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	3 cut(s)	456, 762, 1062
AgsI	TTSAA	5 cut(s)	37, 164, 590, 645, 982
AhdI	GACNNNNNGTC	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	836
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
AluBI	AGCT	2 cut(s)	639, 659
AluI	AGCT	2 cut(s)	639, 659
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	4 cut(s)	21, 433, 866, 879
AoxI	GGCC	2 cut(s)	121, 957
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	1 cut(s)	748
Asp700I	GAANNNNTTC	3 cut(s)	632, 932, 996
AspA2I	CCTAGG	1 cut(s)	875
AspS9I	GGNCC	3 cut(s)	75, 121, 122
AsuHPI	GGTGA	3 cut(s)	257, 313, 1001
AvaII	GGWCC	1 cut(s)	75
AvrII	CCTAGG	1 cut(s)	875
BaeGI	GKGCMC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	871
BanII	GRGCYC	2 cut(s)	125, 173
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	3 cut(s)	50, 292, 566
BciT130I	CCWGG	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	876, 945
BfmI	CTRYAG	1 cut(s)	769
BfrI	CTTAAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	2 cut(s)	608, 957
BlnI	CCTAGG	1 cut(s)	875
BlsI	GCNGC	2 cut(s)	609, 958
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	1 cut(s)	75
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	75, 121, 122
BmiI	GGNNCC	5 cut(s)	77, 123, 124, 624, 873
BmrFI	CCNGG	1 cut(s)	838
BpmI	CTGGAG	1 cut(s)	632
BsaAI	YACGTR	3 cut(s)	188, 228, 890
BsaJI	CCNNGG	1 cut(s)	875
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	1 cut(s)	1077
Bse1I	ACTGG	2 cut(s)	556, 762
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	1 cut(s)	875
BseGI	GGATG	2 cut(s)	42, 1011
BseLI	CCNNNNNNNGG	1 cut(s)	1077
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	556, 762
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	594
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	123, 959
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	2 cut(s)	61, 868
BslI	CCNNNNNNNGG	1 cut(s)	1077
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	61, 868
BsmI	GAATGC	3 cut(s)	328, 448, 529
BsnI	GGCC	2 cut(s)	123, 959
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	125, 173
Bsp143I	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
BspACI	CCGC	3 cut(s)	404, 582, 956
BspANI	GGCC	2 cut(s)	123, 959
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	2 cut(s)	514, 744
BspLI	GGNNCC	5 cut(s)	77, 123, 124, 624, 873
BspPI	GGATC	4 cut(s)	21, 433, 866, 879
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	556, 762
BssECI	CCNNGG	1 cut(s)	875
BssMI	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
BssT1I	CCWWGG	1 cut(s)	875
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	2 cut(s)	770, 986
BstAFI	CTTAAG	1 cut(s)	347
BstBAI	YACGTR	3 cut(s)	188, 228, 890
BstC8I	GCNNGC	5 cut(s)	493, 584, 677, 681, 692
BstDEI	CTNAG	2 cut(s)	133, 210
BstF5I	GGATG	2 cut(s)	42, 1011
BstKTI	GATC	6 cut(s)	29, 428, 736, 829, 869, 874
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 656, 962, 971
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	5 cut(s)	460, 495, 683, 766, 1066
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	1 cut(s)	769
BstSLI	GKGCMC	1 cut(s)	125
BstSNI	TACGTA	1 cut(s)	890
BstV1I	GCAGC	1 cut(s)	594
BstX2I	RGATCY	4 cut(s)	26, 425, 826, 871
BstYI	RGATCY	4 cut(s)	26, 425, 826, 871
BsuRI	GGCC	2 cut(s)	123, 959
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	42, 1011
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	5 cut(s)	493, 584, 677, 681, 692
CciI	TCATGA	2 cut(s)	514, 744
Cfr13I	GGNCC	3 cut(s)	75, 121, 122
Csp6I	GTAC	3 cut(s)	250, 766, 802
CviQI	GTAC	3 cut(s)	250, 766, 802
DdeI	CTNAG	2 cut(s)	133, 210
DpnI	GATC	6 cut(s)	28, 427, 735, 828, 868, 873
DpnII	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	205
Eco105I	TACGTA	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	875
Eco24I	GRGCYC	2 cut(s)	125, 173
Eco47I	GGWCC	1 cut(s)	75
EcoO109I	RGGNCCY	2 cut(s)	121, 122
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	875
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	2 cut(s)	125, 173
ErhI	CCWWGG	1 cut(s)	875
Esp3I	CGTCTC	1 cut(s)	210
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	2 cut(s)	61, 868
FauI	CCCGC	1 cut(s)	575
Fnu4HI	GCNGC	2 cut(s)	608, 957
FokI	GGATG	2 cut(s)	29, 998
FriOI	GRGCYC	2 cut(s)	125, 173
Fsp4HI	GCNGC	2 cut(s)	608, 957
FspBI	CTAG	2 cut(s)	876, 945
GluI	GCNGC	2 cut(s)	608, 957
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	123, 959
HapII	CCGG	1 cut(s)	740
HinfI	GANTC	4 cut(s)	728, 881, 1008, 1091
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	3 cut(s)	257, 313, 1001
Hpy166II	GTNNAC	3 cut(s)	231, 252, 992
Hpy188I	TCNGA	8 cut(s)	59, 211, 600, 733, 790, 831, 871, 927
Hpy188III	TCNNGA	4 cut(s)	9, 515, 745, 855
Hpy8I	GTNNAC	3 cut(s)	231, 252, 992
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	4 cut(s)	361, 415, 521, 908
HpyCH4III	ACNGT	2 cut(s)	770, 986
HpyCH4IV	ACGT	5 cut(s)	187, 219, 227, 332, 889
HpyCH4V	TGCA	5 cut(s)	261, 386, 491, 495, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 656, 962, 971
HpyF3I	CTNAG	2 cut(s)	133, 210
HpySE526I	ACGT	5 cut(s)	187, 219, 227, 332, 889
Kzo9I	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
LmnI	GCTCC	1 cut(s)	1080
Lsp1109I	GCAGC	1 cut(s)	594
MaeI	CTAG	2 cut(s)	876, 945
MaeII	ACGT	5 cut(s)	187, 219, 227, 332, 889
MaeIII	GTNAC	3 cut(s)	223, 263, 949
MalI	GATC	6 cut(s)	28, 427, 735, 828, 868, 873
MboI	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
MboII	GAAGA	2 cut(s)	532, 728
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	4 cut(s)	26, 425, 826, 871
MhlI	GDGCHC	2 cut(s)	125, 173
MluCI	AATT	5 cut(s)	645, 711, 748, 849, 928
MlyI	GAGTC	3 cut(s)	737, 890, 1085
MmeI	TCCRAC	2 cut(s)	515, 891
MnlI	CCTC	7 cut(s)	16, 140, 175, 297, 607, 784, 1013
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	3 cut(s)	632, 932, 996
MseI	TTAA	8 cut(s)	146, 348, 408, 504, 714, 848, 941, 1026
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	838
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	3 cut(s)	328, 448, 529
MvaI	CCWGG	1 cut(s)	838
MwoI	GCNNNNNNNGC	4 cut(s)	242, 656, 962, 971
NdeII	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
NlaIV	GGNNCC	5 cut(s)	77, 123, 124, 624, 873
NmuCI	GTSAC	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	5 cut(s)	460, 495, 683, 766, 1066
PaeI	GCATGC	2 cut(s)	495, 683
PagI	TCATGA	2 cut(s)	514, 744
PciI	ACATGT	3 cut(s)	456, 762, 1062
PctI	GAATGC	3 cut(s)	328, 448, 529
PdmI	GAANNNNTTC	3 cut(s)	632, 932, 996
PfeI	GAWTC	1 cut(s)	1008
PkrI	GCNGC	2 cut(s)	609, 958
PleI	GAGTC	3 cut(s)	736, 889, 1085
PpsI	GAGTC	3 cut(s)	736, 889, 1085
Ppu21I	YACGTR	3 cut(s)	188, 228, 890
PscI	ACATGT	3 cut(s)	456, 762, 1062
Psp6I	CCWGG	1 cut(s)	836
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	5 cut(s)	77, 123, 124, 624, 873
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	3 cut(s)	75, 121, 122
PsuI	RGATCY	4 cut(s)	26, 425, 826, 871
RsaI	GTAC	3 cut(s)	251, 767, 803
RsaNI	GTAC	3 cut(s)	250, 766, 802
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	8 cut(s)	146, 348, 408, 504, 714, 848, 941, 1026
SatI	GCNGC	2 cut(s)	608, 957
Sau3AI	GATC	6 cut(s)	26, 425, 733, 826, 866, 871
Sau96I	GGNCC	3 cut(s)	75, 121, 122
ScaI	AGTACT	1 cut(s)	803
SchI	GAGTC	3 cut(s)	737, 890, 1085
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	2 cut(s)	125, 173
SfcI	CTRYAG	1 cut(s)	769
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	7, 347
SmoI	CTYRAG	2 cut(s)	7, 347
SnaBI	TACGTA	1 cut(s)	890
SphI	GCATGC	2 cut(s)	495, 683
Sse9I	AATT	5 cut(s)	645, 711, 748, 849, 928
SsiI	CCGC	3 cut(s)	404, 582, 956
SspI	AATATT	1 cut(s)	1104
SspMI	CTAG	2 cut(s)	876, 945
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	1 cut(s)	875
TaaI	ACNGT	2 cut(s)	770, 986
TaiI	ACGT	5 cut(s)	190, 222, 230, 335, 892
TaqI	TCGA	4 cut(s)	198, 338, 668, 726
TasI	AATT	5 cut(s)	645, 711, 748, 849, 928
TatI	WGTACW	2 cut(s)	765, 801
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	1 cut(s)	1008
Tru1I	TTAA	8 cut(s)	146, 348, 408, 504, 714, 848, 941, 1026
Tru9I	TTAA	8 cut(s)	146, 348, 408, 504, 714, 848, 941, 1026
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	9 cut(s)	59, 380, 383, 434, 503, 761, 825, 876, 989
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	5 cut(s)	460, 495, 683, 766, 1066
XmaJI	CCTAGG	1 cut(s)	875
XmnI	GAANNNNTTC	3 cut(s)	632, 932, 996
XspI	CTAG	2 cut(s)	876, 945
ZrmI	AGTACT	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.