Rorug03G0021400

PPR repeat family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
1742831 .. 1745476
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0021400.1

Sequence Viewer

Length: 1356 bp
ATGAGAAGAGGAGGAGGAGGTTCTTCTGGGAATTACAGAAACCCATGTCTGACTATGCACCAGCCATGGGCTTCTCTGCTCGTATATGGTATCAAACGCATCGAGGGCAGGTCATGGCCTGCTCCCATTAGAGGACGTCTTTGGATTCATGCTGCTGGCAAGGTTCCAGAGGAGGCTACAATCAAAGCAATGGAGGATTTCTATCGGGAAATTTATGCGGTGGATGGAGTCACTGATATCAAATTTCCCCAACACTATCCAGTTTCAAGACTGCTAGGGTGTGTTGAAGTAGTTGGATGTGTTAGACGCGAAGAGTTAGCTGGTTGGGAGATGGTTCCTGAAGGGGTGAGGTTGGAAGCACAAACCGATATGTGTTGGCTTTGCGAGCAGCCACAGAAACTGTTAATTCCGTTTGAGATGCGTGGCTACCAAGGTGTCTATAACTTGGAAAAGAAGATATATGAAGCTGCTATTAGAGGTCTCACCCCGGTTGAAGTTCCTCTCCCAGTTAAATTTCCACTTCCAAATCCAGAAGATCCATTTTCCTTGAAGCCGGGGTCTATATCTGCAAACGTTGATCAATCTAGAACATCTGAAGCGGGAAGATCTTCGAGTCTCAATGCAGCTATAGCTGGTGCACGAGCAGCTGCTACACAGTTCTCCAAAAAACCTCAAACTTTCCCAACTACCTCCCTAAATGATGCAGCCAAATCTGTGACAGTTCCAATCAAGAGTGAATCTTTTGAAGGAGGTAGAGCAATGACCGGTAATTTCAGTGAGAGCTCCAATAAAGAGTCTATGACATCAAATAACAAAGATCAAATCAGCAGCCATAATCAACCTTCTTCTGGAGCTATTAGACCTCATCCTGGTGCACCTTCTAAGATATATGAAGCGGCTATTAGAGGTCTTACCCCTGTTGAAGTTCCCCTTAAAGTCAAATTTCCAGTTCCAAATCCAGAAGATCCATTTTCCTTGAAGCCAGGATTTATATCTGCTAATGTCGATCAATCTAGAACATCTGAAGTGGTAAGATCTTCTAGTCTCAATACAGCCATAGCTGGTGCACAAGCAGCTGATACACAGTTCTCCAAAAAAGCTCAAACTTTCCCAACTACCTCCCTAAATAATGCCGCGGAATCTGTGACAGTTCCAATCAGGAGTGAGTCTTCTGAAGTGGGTAAAGTGACGTCCGCTAATTTTATTGAGAGTTCTAATAAGCGGTCTATGACATCAAATAACAAAGATCAAATCAGCAGAGGTGATCAACCTTCTTCTGGAGCTTTTAGACCTCATCCTGGTGCACCTTCTAAGTATGTTTATGAACGGAGGAGGCGACGAGATGCCCAGTTTTGA

Protein Analysis

451

Amino Acids

49.23

Weight (kDa)

9.34

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASCH PF04266 17 - 105 3.9e-08 ASCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014343)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 139, 1193
Acc36I ACCTGC 1 cut(s) 99
AccII CGCG 2 cut(s) 309, 1136
AciI CCGC 7 cut(s) 218, 599, 896, 1134, 1136, 1194, 1222
AclI AACGTT 1 cut(s) 573
AclWI GGATC 2 cut(s) 530, 959
AcsI RAATTY 4 cut(s) 210, 242, 512, 941
AcuI CTGAAG 4 cut(s) 360, 615, 1044, 1194
AcyI GRCGYC 2 cut(s) 136, 1190
AfiI CCNNNNNNNGG 6 cut(s) 67, 131, 848, 869, 1277, 1298
AgeI ACCGGT 1 cut(s) 764
AgsI TTSAA 7 cut(s) 267, 287, 494, 550, 746, 923, 979
AjnI CCWGG 3 cut(s) 868, 982, 1297
Alw21I GWGCWC 5 cut(s) 640, 785, 877, 1069, 1306
Alw26I GTCTC 3 cut(s) 485, 620, 1049
Alw44I GTGCAC 4 cut(s) 636, 873, 1065, 1302
AlwI GGATC 2 cut(s) 530, 959
AlwNI CAGNNNCTG 1 cut(s) 400
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 4 cut(s) 636, 873, 1065, 1302
ApeKI GCWGC 9 cut(s) 152, 388, 467, 623, 644, 647, 704, 828, 1073
ApoI RAATTY 4 cut(s) 210, 242, 512, 941
AsiGI ACCGGT 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 607
AsuC2I CCSGG 2 cut(s) 488, 555
AsuHPI GGTGA 3 cut(s) 358, 475, 1274
BaeGI GKGCMC 4 cut(s) 640, 877, 1069, 1306
BanII GRGCYC 1 cut(s) 785
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 1161
Bbv12I GWGCWC 5 cut(s) 640, 785, 877, 1069, 1306
BbvI GCAGC 9 cut(s) 139, 400, 454, 634, 635, 656, 716, 840, 1085
BccI CCATC 2 cut(s) 218, 325
BciT130I CCWGG 3 cut(s) 870, 984, 1299
BclI TGATCA 2 cut(s) 577, 1264
BcnI CCSGG 2 cut(s) 488, 555
BcoDI GTCTC 3 cut(s) 485, 620, 1049
BfaI CTAG 4 cut(s) 275, 585, 1014, 1041
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 99
BglII AGATCT 2 cut(s) 605, 1034
Bme1390I CCNGG 5 cut(s) 488, 555, 870, 984, 1299
BmiI GGNNCC 2 cut(s) 165, 336
BmrFI CCNGG 5 cut(s) 488, 555, 870, 984, 1299
BmrI ACTGGG 2 cut(s) 500, 1342
BmsI GCATC 4 cut(s) 108, 408, 691, 1333
BmuI ACTGGG 2 cut(s) 500, 1342
BpiI GAAGAC 1 cut(s) 1161
BpmI CTGGAG 2 cut(s) 870, 1299
BpuMI CCSGG 2 cut(s) 488, 555
BsaBI GATNNNNATC 2 cut(s) 201, 991
BsaHI GRCGYC 2 cut(s) 136, 1190
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 5 cut(s) 65, 430, 486, 554, 1134
BsaWI WCCGGW 1 cut(s) 764
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 131, 848, 869, 1277, 1298
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 4 cut(s) 260, 506, 947, 1348
Bse3DI GCAATG 2 cut(s) 195, 765
Bse8I GATNNNNATC 2 cut(s) 201, 991
BseBI CCWGG 3 cut(s) 870, 984, 1299
BseDI CCNNGG 5 cut(s) 65, 430, 486, 554, 1134
BseGI GGATG 4 cut(s) 229, 302, 865, 1294
BseJI GATNNNNATC 2 cut(s) 201, 991
BseLI CCNNNNNNNGG 6 cut(s) 67, 131, 848, 869, 1277, 1298
BseMI GCAATG 2 cut(s) 195, 765
BseNI ACTGG 4 cut(s) 260, 506, 947, 1348
BseRI GAGGAG 5 cut(s) 24, 27, 30, 185, 1345
BseSI GKGCMC 4 cut(s) 640, 877, 1069, 1306
BseXI GCAGC 9 cut(s) 139, 400, 454, 634, 635, 656, 716, 840, 1085
Bsh1236I CGCG 2 cut(s) 309, 1136
BshFI GGCC 1 cut(s) 118
BshTI ACCGGT 1 cut(s) 764
BsiHKAI GWGCWC 5 cut(s) 640, 785, 877, 1069, 1306
BsiSI CCGG 3 cut(s) 488, 554, 765
BslI CCNNNNNNNGG 6 cut(s) 67, 131, 848, 869, 1277, 1298
BsmAI GTCTC 3 cut(s) 485, 620, 1049
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 5 cut(s) 640, 785, 877, 1069, 1306
Bsp143I GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 7 cut(s) 218, 599, 896, 1134, 1136, 1194, 1222
BspANI GGCC 1 cut(s) 118
BspFNI CGCG 2 cut(s) 309, 1136
BspLI GGNNCC 2 cut(s) 165, 336
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 530, 959
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 2 cut(s) 195, 765
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 4 cut(s) 260, 506, 947, 1348
BssAI RCCGGY 1 cut(s) 764
BssECI CCNNGG 5 cut(s) 65, 430, 486, 554, 1134
BssMI GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
BssNI GRCGYC 2 cut(s) 136, 1190
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 65, 430
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 3 cut(s) 870, 984, 1299
Bst4CI ACNGT 5 cut(s) 402, 657, 721, 1086, 1150
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 2 cut(s) 136, 1190
BstC8I GCNNGC 3 cut(s) 120, 157, 386
BstDEI CTNAG 2 cut(s) 882, 1311
BstDSI CCRYGG 2 cut(s) 65, 1134
BstF5I GGATG 4 cut(s) 229, 302, 865, 1294
BstFNI CGCG 2 cut(s) 309, 1136
BstKTI GATC 9 cut(s) 538, 580, 608, 820, 967, 1009, 1037, 1249, 1267
BstMAI GTCTC 3 cut(s) 485, 620, 1049
BstMBI GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
BstMWI GCNNNNNNNGC 5 cut(s) 105, 385, 629, 644, 1073
BstNI CCWGG 3 cut(s) 870, 984, 1299
BstSCI CCNGG 5 cut(s) 486, 553, 868, 982, 1297
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 4 cut(s) 640, 877, 1069, 1306
BstUI CGCG 2 cut(s) 309, 1136
BstV1I GCAGC 9 cut(s) 139, 400, 454, 634, 635, 656, 716, 840, 1085
BstV2I GAAGAC 1 cut(s) 1161
BstX2I RGATCY 4 cut(s) 535, 605, 964, 1034
BstYI RGATCY 4 cut(s) 535, 605, 964, 1034
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 2 cut(s) 65, 1134
BtsCI GGATG 4 cut(s) 229, 302, 865, 1294
BtsIMutI CAGTG 2 cut(s) 231, 781
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 120, 157, 386
CaiI CAGNNNCTG 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 764
Cfr42I CCGCGG 1 cut(s) 1137
CseI GACGC 1 cut(s) 315
CspAI ACCGGT 1 cut(s) 764
CviAII CATG 4 cut(s) 45, 66, 114, 149
DdeI CTNAG 2 cut(s) 882, 1311
DpnI GATC 9 cut(s) 537, 579, 607, 819, 966, 1008, 1036, 1248, 1266
DpnII GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 65, 430
Eco24I GRGCYC 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 485
Eco32I GATATC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 783
Eco57I CTGAAG 4 cut(s) 360, 615, 1044, 1194
EcoICRI GAGCTC 1 cut(s) 783
EcoRII CCWGG 3 cut(s) 868, 982, 1297
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 65, 430
EcoT38I GRGCYC 1 cut(s) 785
ErhI CCWWGG 2 cut(s) 65, 430
FaeI CATG 4 cut(s) 48, 69, 117, 152
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FatI CATG 4 cut(s) 44, 65, 113, 148
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 2 cut(s) 577, 1264
FokI GGATG 4 cut(s) 236, 309, 852, 1281
FriOI GRGCYC 1 cut(s) 785
FspBI CTAG 4 cut(s) 275, 585, 1014, 1041
GsuI CTGGAG 2 cut(s) 870, 1299
HaeIII GGCC 1 cut(s) 118
HapII CCGG 3 cut(s) 488, 554, 765
HgaI GACGC 1 cut(s) 315
Hin1I GRCGYC 2 cut(s) 136, 1190
Hin1II CATG 4 cut(s) 48, 69, 117, 152
HinfI GANTC 7 cut(s) 145, 228, 613, 737, 794, 1139, 1166
HpaII CCGG 3 cut(s) 488, 554, 765
HphI GGTGA 3 cut(s) 358, 475, 1274
Hpy166II GTNNAC 4 cut(s) 638, 875, 1067, 1304
Hpy188I TCNGA 4 cut(s) 51, 595, 1024, 1174
Hpy8I GTNNAC 4 cut(s) 638, 875, 1067, 1304
Hpy99I CGWCG 1 cut(s) 1341
HpyAV CCTTC 6 cut(s) 335, 740, 852, 888, 1281, 1317
HpyCH4III ACNGT 5 cut(s) 402, 657, 721, 1086, 1150
HpyCH4IV ACGT 3 cut(s) 136, 573, 1190
HpyCH4V TGCA 8 cut(s) 58, 569, 623, 638, 704, 875, 1067, 1304
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 385, 629, 644, 1073
HpyF3I CTNAG 2 cut(s) 882, 1311
HpySE526I ACGT 3 cut(s) 136, 573, 1190
Hsp92I GRCGYC 2 cut(s) 136, 1190
Hsp92II CATG 4 cut(s) 48, 69, 117, 152
Ksp22I TGATCA 2 cut(s) 577, 1264
KspI CCGCGG 1 cut(s) 1137
Kzo9I GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
LmnI GCTCC 4 cut(s) 127, 788, 851, 1280
Lsp1109I GCAGC 9 cut(s) 139, 400, 454, 634, 635, 656, 716, 840, 1085
LweI GCATC 4 cut(s) 108, 408, 691, 1333
MaeI CTAG 4 cut(s) 275, 585, 1014, 1041
MaeII ACGT 3 cut(s) 136, 573, 1190
MaeIII GTNAC 4 cut(s) 229, 715, 1144, 1186
MalI GATC 9 cut(s) 537, 579, 607, 819, 966, 1008, 1036, 1248, 1266
MboI GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
MflI RGATCY 4 cut(s) 535, 605, 964, 1034
MhlI GDGCHC 5 cut(s) 640, 785, 877, 1069, 1306
MluCI AATT 8 cut(s) 31, 210, 242, 405, 512, 769, 941, 1198
MlyI GAGTC 4 cut(s) 237, 622, 803, 1175
MmeI TCCRAC 2 cut(s) 274, 333
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 3 cut(s) 404, 510, 933
MslI CAYNNNNRTG 2 cut(s) 870, 1299
MspA1I CMGCKG 3 cut(s) 647, 1076, 1136
MspI CCGG 3 cut(s) 488, 554, 765
MspR9I CCNGG 5 cut(s) 488, 555, 870, 984, 1299
MvaI CCWGG 3 cut(s) 870, 984, 1299
MvnI CGCG 2 cut(s) 309, 1136
MwoI GCNNNNNNNGC 5 cut(s) 105, 385, 629, 644, 1073
NciI CCSGG 2 cut(s) 488, 555
NcoI CCATGG 1 cut(s) 65
NdeII GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
NlaIII CATG 4 cut(s) 48, 69, 117, 152
NlaIV GGNNCC 2 cut(s) 165, 336
NmuCI GTSAC 4 cut(s) 229, 715, 1144, 1186
PcsI WCGNNNNNNNCGW 1 cut(s) 1333
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 145, 737, 1139
PinAI ACCGGT 1 cut(s) 764
PleI GAGTC 4 cut(s) 236, 621, 802, 1174
PpsI GAGTC 4 cut(s) 236, 621, 802, 1174
Psp124BI GAGCTC 1 cut(s) 785
Psp1406I AACGTT 1 cut(s) 573
Psp6I CCWGG 3 cut(s) 868, 982, 1297
PspGI CCWGG 3 cut(s) 868, 982, 1297
PspN4I GGNNCC 2 cut(s) 165, 336
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 4 cut(s) 535, 605, 964, 1034
PvuII CAGCTG 2 cut(s) 647, 1076
RseI CAYNNNNRTG 2 cut(s) 870, 1299
SacI GAGCTC 1 cut(s) 785
SacII CCGCGG 1 cut(s) 1137
SaqAI TTAA 3 cut(s) 404, 510, 933
Sau3AI GATC 9 cut(s) 535, 577, 605, 817, 964, 1006, 1034, 1246, 1264
SchI GAGTC 4 cut(s) 237, 622, 803, 1175
ScrFI CCNGG 5 cut(s) 488, 555, 870, 984, 1299
SduI GDGCHC 5 cut(s) 640, 785, 877, 1069, 1306
SfaNI GCATC 4 cut(s) 108, 408, 691, 1333
SfcI CTRYAG 1 cut(s) 627
Sfr303I CCGCGG 1 cut(s) 1137
SgrBI CCGCGG 1 cut(s) 1137
SmiMI CAYNNNNRTG 2 cut(s) 870, 1299
Sse9I AATT 8 cut(s) 31, 210, 242, 405, 512, 769, 941, 1198
SsiI CCGC 7 cut(s) 218, 599, 896, 1134, 1136, 1194, 1222
SspMI CTAG 4 cut(s) 275, 585, 1014, 1041
SstI GAGCTC 1 cut(s) 785
StyD4I CCNGG 5 cut(s) 486, 553, 868, 982, 1297
StyI CCWWGG 2 cut(s) 65, 430
TaaI ACNGT 5 cut(s) 402, 657, 721, 1086, 1150
TaiI ACGT 3 cut(s) 139, 576, 1193
TaqI TCGA 3 cut(s) 102, 611, 1005
TasI AATT 8 cut(s) 31, 210, 242, 405, 512, 769, 941, 1198
TauI GCSGC 2 cut(s) 899, 1136
TfiI GAWTC 3 cut(s) 145, 737, 1139
Tru1I TTAA 3 cut(s) 404, 510, 933
Tru9I TTAA 3 cut(s) 404, 510, 933
TscAI CASTG 2 cut(s) 238, 781
TseFI GTSAC 4 cut(s) 229, 715, 1144, 1186
TseI GCWGC 9 cut(s) 152, 388, 467, 623, 644, 647, 704, 828, 1073
Tsp45I GTSAC 4 cut(s) 229, 715, 1144, 1186
TspDTI ATGAA 4 cut(s) 137, 477, 906, 1338
TspGWI ACGGA 2 cut(s) 399, 1342
TspRI CASTG 2 cut(s) 238, 781
VneI GTGCAC 4 cut(s) 636, 873, 1065, 1302
XapI RAATTY 4 cut(s) 210, 242, 512, 941
XbaI TCTAGA 2 cut(s) 584, 1013
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 4 cut(s) 275, 585, 1014, 1041
ZraI GACGTC 2 cut(s) 137, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.