RLG00000025210

PPR repeat family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
43018309 .. 43020215
1907 bp
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UTR
Exon/CDS
Intron
RLM00000025210

Sequence Viewer

Length: 1578 bp
ATGACCTCAAGAAAACTACTACCCGGATCCCACTTCAACCCCATCCCACCCATAATCAGAAACTCACTTCATTGGTCCCAAGAACCCACCACCCAATCAAATCCACCTTTTTTATCAAAGGGCCCCAACCTCTTAGCCACAGACTTAATCAAGTCCTACTTCGAAAAGGGCTCTATCAAAGAAGCACGTAAGGTGTTCGACGAAATGTCTGAGAGAGACGTGGTCACTTGGACTGCCATGATTGCTGGGTACACTTCTTGCAGTCACCACAGCACTGCTTGGGCTGTGTTCTGTGAGATGGTGAGGGTTGATATGGAGCCGAATGCTTTTACGTTTTCGAGTGTGCTCAAGGCTTGTAAAGGAATGAAGGCTCTTTCTTGTGGTGCAATGGTTCATGGGTCGGCGGTTAAGTATGGCATGAAGGGATCTATGTATGTGGAGAATGCACTTATGGACATGTATGCTACTTGTTGTGTTAGCATGGACAATGCATGCAAGGTGTTTAATGATCTTCATGAGAAGAATGCTGTGAGTTGGACTACTTTGATCACTGGCTACACTCATAGAGGTGATGGCTATGGCGGGCTTCAAGTTTTTCGGAAAATGCTGCTGGAGGAAGTGGAACCGAACCCTTTCAGCTTTTCAATTGCGATTAGAGCTTGTGCTTCGAGTGGATCGCATGCTTTTGGCAGGCAAATACATTCGGCTGTAATTAAGTATGGGTTCGAGTCTGATCTTCCGGTCATGAATTCCATACTGGACATGTACTGCAGGTTTGGATGTTTATCAGAGGCAAATCAGTACTTTGATGAAATGAGTAAAAAAGATTTGATCACCTGGAACGCCTTAATTTCTGGATATGAAAGATCGGATCCTAGGGAGTCCCTATGTATATTTTCTCGGATGGAGTTAGAAGGCTTTAGTCCAAATTGCTTCACATTAACCAGCGTTACAGCGGCCTGTGCTAACTTGGCAGTTTTGAACTGTGGTGAACAAGTTCATGGTGGAATCATCCGTAGAGGCTTTAAGAAGAACTTGGCATTGGCTAATGCACTTATTGACATGTATGCCAAGTGTGGGAGCATTACTGACTCGCACAAAATATTTAGTGAAATGTCTGATAGAGATTTAGTCTCCTGGACTTCCATGATGCTTGGATATGGGGATCATGGATATGGAAAAGAGGCTGTTGAATTGTTTGATGAGATGGTAAAGTCAGGTATTAGGCCAGATCGAATAGTGTTTATGGCAGTTCTGAGTGCTTGCAGCCATGCTGGACTCGTCGATGAAGGCTTGAGGTATTTCAAATCAATGATAAATGATTATAAGGTTACTCCAGATAAGGACATATATGGTTGCGTGGTGGATTTGCTGTGCCGTGCTGGGAGAATCGAGGAAGCTTATGAGTTAATAGAGAGCATGCCATTTAAGCCTGATGAGTCTGTTTGGGGAGATAAGATGGGTTCTCATATAAAGTGGGTGTATGAAGTTTTGGAATTACTGATTTGGCATATGAAAGAGGCAGAGTACTTAACTGATTTGGATTGCTCTGTACATGACCAAGATGATGGAACTTGA

Protein Analysis

526

Amino Acids

58.72

Weight (kDa)

5.56

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 119 1.1e-12 PPR repeat family
PPR_2 PF13041 174 - 222 8.5e-09 PPR repeat family
PPR_2 PF13041 376 - 423 6.4e-10 PPR repeat family
PPR PF01535 378 - 408 1.9e-08 PPR repeat
PPR_1 PF12854 444 - 474 1.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014343)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1326
Acc36I ACCTGC 1 cut(s) 762
AciI CCGC 3 cut(s) 404, 582, 956
AclWI GGATC 7 cut(s) 21, 34, 433, 682, 866, 879, 1173
AcsI RAATTY 1 cut(s) 748
AfaI GTAC 5 cut(s) 251, 767, 803, 1529, 1554
AfiI CCNNNNNNNGG 1 cut(s) 1077
AflIII ACRYGT 3 cut(s) 456, 762, 1062
AgsI TTSAA 6 cut(s) 37, 590, 645, 982, 1193, 1306
AhdI GACNNNNNGTC 1 cut(s) 205
AjiI CACGTC 1 cut(s) 220
AjnI CCWGG 2 cut(s) 836, 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AluBI AGCT 3 cut(s) 639, 659, 1400
AluI AGCT 3 cut(s) 639, 659, 1400
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 210, 1138
AlwI GGATC 7 cut(s) 21, 34, 433, 682, 866, 879, 1173
AoxI GGCC 3 cut(s) 121, 957, 1226
ApaI GGGCCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 607, 1266
ApoI RAATTY 1 cut(s) 748
Asp700I GAANNNNTTC 2 cut(s) 632, 996
AspA2I CCTAGG 1 cut(s) 875
AspS9I GGNCC 3 cut(s) 75, 121, 122
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 5 cut(s) 257, 313, 581, 826, 1001
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 75
AvrII CCTAGG 1 cut(s) 875
BaeGI GKGCMC 1 cut(s) 125
BamHI GGATCC 2 cut(s) 26, 871
BanII GRGCYC 2 cut(s) 125, 173
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 594, 1278
BccI CCATC 7 cut(s) 50, 292, 566, 898, 1201, 1453, 1562
BceAI ACGGC 1 cut(s) 1362
BciT130I CCWGG 2 cut(s) 838, 1138
BclI TGATCA 2 cut(s) 546, 831
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 210, 1138
BfaI CTAG 1 cut(s) 876
BfmI CTRYAG 1 cut(s) 769
BfuAI ACCTGC 1 cut(s) 762
BisI GCNGC 3 cut(s) 608, 957, 1267
BlnI CCTAGG 1 cut(s) 875
BlsI GCNGC 3 cut(s) 609, 958, 1268
BmcAI AGTACT 2 cut(s) 803, 1529
Bme1390I CCNGG 3 cut(s) 24, 838, 1138
Bme18I GGWCC 1 cut(s) 75
BmeRI GACNNNNNGTC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 3 cut(s) 75, 121, 122
BmiI GGNNCC 7 cut(s) 28, 77, 123, 124, 318, 624, 873
BmrFI CCNGG 3 cut(s) 24, 838, 1138
BmsI GCATC 1 cut(s) 1140
BpmI CTGGAG 2 cut(s) 632, 1320
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 332, 1315
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 875
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 1 cut(s) 1077
Bse1I ACTGG 2 cut(s) 556, 762
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 784
BseBI CCWGG 2 cut(s) 838, 1138
BseDI CCNNGG 1 cut(s) 875
BseGI GGATG 4 cut(s) 42, 785, 909, 1011
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 1 cut(s) 1077
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 201, 1247
BseNI ACTGG 2 cut(s) 556, 762
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 2 cut(s) 594, 1278
BseYI CCCAGC 2 cut(s) 245, 1382
BshFI GGCC 3 cut(s) 123, 959, 1228
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 24, 740
BslFI GGGAC 2 cut(s) 61, 868
BslI CCNNNNNNNGG 1 cut(s) 1077
BsmAI GTCTC 2 cut(s) 210, 1138
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 61, 868
BsmI GAATGC 3 cut(s) 328, 448, 529
BsnI GGCC 3 cut(s) 123, 959, 1228
Bsp119I TTCGAA 1 cut(s) 162
Bsp120I GGGCCC 1 cut(s) 121
Bsp1286I GDGCHC 3 cut(s) 125, 173, 348
Bsp1407I TGTACA 1 cut(s) 1552
BspACI CCGC 3 cut(s) 404, 582, 956
BspANI GGCC 3 cut(s) 123, 959, 1228
BspCNI CTCAG 2 cut(s) 202, 1248
BspHI TCATGA 2 cut(s) 514, 744
BspLI GGNNCC 7 cut(s) 28, 77, 123, 124, 318, 624, 873
BspMAI CTGCAG 1 cut(s) 773
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 7 cut(s) 21, 34, 433, 682, 866, 879, 1173
BspT104I TTCGAA 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 1552
BsrI ACTGG 2 cut(s) 556, 762
BssECI CCNNGG 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 875
Bst2UI CCWGG 2 cut(s) 838, 1138
Bst4CI ACNGT 1 cut(s) 986
BstAUI TGTACA 1 cut(s) 1552
BstBAI YACGTR 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 6 cut(s) 493, 584, 681, 692, 1264, 1421
BstDEI CTNAG 3 cut(s) 133, 210, 1256
BstF5I GGATG 4 cut(s) 42, 785, 909, 1011
BstMAI GTCTC 2 cut(s) 210, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 242, 656, 962, 971, 1429
BstNI CCWGG 2 cut(s) 838, 1138
BstNSI RCATGY 6 cut(s) 460, 495, 683, 766, 1066, 1423
BstSCI CCNGG 3 cut(s) 22, 836, 1136
BstSFI CTRYAG 1 cut(s) 769
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 594, 1278
BstX2I RGATCY 3 cut(s) 26, 425, 871
BstXI CCANNNNNNTGG 1 cut(s) 1568
BstYI RGATCY 3 cut(s) 26, 425, 871
BsuRI GGCC 3 cut(s) 123, 959, 1228
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 4 cut(s) 42, 785, 909, 1011
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 273, 549
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 6 cut(s) 493, 584, 681, 692, 1264, 1421
CciI TCATGA 2 cut(s) 514, 744
Cfr13I GGNCC 3 cut(s) 75, 121, 122
Csp6I GTAC 5 cut(s) 250, 766, 802, 1528, 1553
CviQI GTAC 5 cut(s) 250, 766, 802, 1528, 1553
DdeI CTNAG 3 cut(s) 133, 210, 1256
DriI GACNNNNNGTC 1 cut(s) 205
Eam1105I GACNNNNNGTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 875
Eco24I GRGCYC 2 cut(s) 125, 173
Eco47I GGWCC 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 121, 122
EcoRI GAATTC 1 cut(s) 748
EcoRII CCWGG 2 cut(s) 836, 1136
EcoT14I CCWWGG 1 cut(s) 875
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 2 cut(s) 125, 173
ErhI CCWWGG 1 cut(s) 875
Esp3I CGTCTC 1 cut(s) 210
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 1019, 1051
FaqI GGGAC 2 cut(s) 61, 868
FauI CCCGC 1 cut(s) 575
FauNDI CATATG 1 cut(s) 1512
FbaI TGATCA 2 cut(s) 546, 831
Fnu4HI GCNGC 3 cut(s) 608, 957, 1267
FokI GGATG 4 cut(s) 29, 792, 916, 998
FriOI GRGCYC 2 cut(s) 125, 173
Fsp4HI GCNGC 3 cut(s) 608, 957, 1267
FspBI CTAG 1 cut(s) 876
GluI GCNGC 3 cut(s) 608, 957, 1267
GsaI CCCAGC 2 cut(s) 249, 1386
GsuI CTGGAG 2 cut(s) 632, 1320
HaeIII GGCC 3 cut(s) 123, 959, 1228
HapII CCGG 2 cut(s) 24, 740
HindIII AAGCTT 1 cut(s) 1398
HinfI GANTC 7 cut(s) 728, 881, 1008, 1091, 1278, 1389, 1439
HpaII CCGG 2 cut(s) 24, 740
HphI GGTGA 5 cut(s) 257, 313, 581, 826, 1001
Hpy166II GTNNAC 2 cut(s) 252, 992
Hpy188I TCNGA 9 cut(s) 59, 211, 600, 733, 790, 871, 903, 1120, 1257
Hpy188III TCNNGA 5 cut(s) 9, 515, 745, 855, 1337
Hpy8I GTNNAC 2 cut(s) 252, 992
Hpy99I CGWCG 2 cut(s) 203, 1286
HpyAV CCTTC 4 cut(s) 361, 415, 908, 1283
HpyCH4III ACNGT 1 cut(s) 986
HpyCH4IV ACGT 3 cut(s) 187, 219, 332
HpyCH4V TGCA 8 cut(s) 261, 386, 446, 491, 495, 771, 1052, 1266
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 656, 962, 971, 1429
HpyF3I CTNAG 3 cut(s) 133, 210, 1256
HpySE526I ACGT 3 cut(s) 187, 219, 332
Ksp22I TGATCA 2 cut(s) 546, 831
LmnI GCTCC 2 cut(s) 316, 1080
Lsp1109I GCAGC 2 cut(s) 594, 1278
LweI GCATC 1 cut(s) 1140
MaeI CTAG 1 cut(s) 876
MaeII ACGT 3 cut(s) 187, 219, 332
MaeIII GTNAC 4 cut(s) 223, 263, 949, 1330
MboII GAAGA 4 cut(s) 503, 532, 728, 1042
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 3 cut(s) 26, 425, 871
MhlI GDGCHC 3 cut(s) 125, 173, 348
MluCI AATT 7 cut(s) 645, 711, 748, 849, 928, 1193, 1496
MlyI GAGTC 5 cut(s) 737, 890, 1085, 1272, 1448
MmeI TCCRAC 1 cut(s) 515
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 2 cut(s) 632, 996
MslI CAYNNNNRTG 2 cut(s) 567, 1173
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 2 cut(s) 24, 740
MspR9I CCNGG 3 cut(s) 24, 838, 1138
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 3 cut(s) 328, 448, 529
MvaI CCWGG 2 cut(s) 838, 1138
MwoI GCNNNNNNNGC 5 cut(s) 242, 656, 962, 971, 1429
NciI CCSGG 1 cut(s) 24
NdeI CATATG 1 cut(s) 1512
NlaIV GGNNCC 7 cut(s) 28, 77, 123, 124, 318, 624, 873
NmuCI GTSAC 2 cut(s) 223, 263
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 6 cut(s) 460, 495, 683, 766, 1066, 1423
NspV TTCGAA 1 cut(s) 162
PaeI GCATGC 3 cut(s) 495, 683, 1423
PagI TCATGA 2 cut(s) 514, 744
PciI ACATGT 3 cut(s) 456, 762, 1062
PctI GAATGC 3 cut(s) 328, 448, 529
PdmI GAANNNNTTC 2 cut(s) 632, 996
PfeI GAWTC 2 cut(s) 1008, 1389
PflFI GACNNNGTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 1136
PkrI GCNGC 3 cut(s) 609, 958, 1268
PleI GAGTC 5 cut(s) 736, 889, 1085, 1272, 1447
PpsI GAGTC 5 cut(s) 736, 889, 1085, 1272, 1447
Ppu21I YACGTR 1 cut(s) 188
PscI ACATGT 3 cut(s) 456, 762, 1062
PsiI TTATAA 1 cut(s) 1326
Psp6I CCWGG 2 cut(s) 836, 1136
PspFI CCCAGC 2 cut(s) 245, 1382
PspGI CCWGG 2 cut(s) 836, 1136
PspN4I GGNNCC 7 cut(s) 28, 77, 123, 124, 318, 624, 873
PspOMI GGGCCC 1 cut(s) 121
PspPI GGNCC 3 cut(s) 75, 121, 122
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 3 cut(s) 26, 425, 871
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 5 cut(s) 251, 767, 803, 1529, 1554
RsaNI GTAC 5 cut(s) 250, 766, 802, 1528, 1553
RseI CAYNNNNRTG 2 cut(s) 567, 1173
SatI GCNGC 3 cut(s) 608, 957, 1267
Sau96I GGNCC 3 cut(s) 75, 121, 122
ScaI AGTACT 2 cut(s) 803, 1529
SchI GAGTC 5 cut(s) 737, 890, 1085, 1272, 1448
ScrFI CCNGG 3 cut(s) 24, 838, 1138
SduI GDGCHC 3 cut(s) 125, 173, 348
SfaNI GCATC 1 cut(s) 1140
SfcI CTRYAG 1 cut(s) 769
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 2 cut(s) 567, 1173
SmlI CTYRAG 3 cut(s) 7, 347, 1294
SmoI CTYRAG 3 cut(s) 7, 347, 1294
SphI GCATGC 3 cut(s) 495, 683, 1423
Sse9I AATT 7 cut(s) 645, 711, 748, 849, 928, 1193, 1496
SsiI CCGC 3 cut(s) 404, 582, 956
SspI AATATT 1 cut(s) 1104
SspMI CTAG 1 cut(s) 876
StyD4I CCNGG 3 cut(s) 22, 836, 1136
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 1 cut(s) 986
TaiI ACGT 3 cut(s) 190, 222, 335
TaqI TCGA 8 cut(s) 162, 198, 338, 668, 726, 1234, 1284, 1392
TasI AATT 7 cut(s) 645, 711, 748, 849, 928, 1193, 1496
TatI WGTACW 4 cut(s) 765, 801, 1527, 1552
TauI GCSGC 1 cut(s) 959
TfiI GAWTC 2 cut(s) 1008, 1389
TscAI CASTG 2 cut(s) 280, 556
TseFI GTSAC 2 cut(s) 223, 263
TseI GCWGC 2 cut(s) 607, 1266
Tsp45I GTSAC 2 cut(s) 223, 263
TspGWI ACGGA 1 cut(s) 1004
TspRI CASTG 2 cut(s) 280, 556
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 1 cut(s) 748
XceI RCATGY 6 cut(s) 460, 495, 683, 766, 1066, 1423
XmaJI CCTAGG 1 cut(s) 875
XmnI GAANNNNTTC 2 cut(s) 632, 996
XspI CTAG 1 cut(s) 876
ZrmI AGTACT 2 cut(s) 803, 1529
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.