Prupe.6G310000_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
27824079 .. 27826710
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G310000.1

Sequence Viewer

Length: 1824 bp
ATGAGCACACAAAATTCACTATCCAGAACTCATTTCCATATCATGCCACCCATAATCAGAAACTCACTTCAGTGGGCCCGGAACTTTACCACCCATTCAAACCCATCAATTTTACCAAAAAGACCCAATATTTTAGCTACAAATTTAATTAAATCATGTTTTGAAAGGGGATTAATCAAAGAAGCACGTAAGCTGTTCGATGAAATGCCGGAGAGAGACGTGGTTGCATGGACTGCTATTATTGCTGGGTACACGTCTTGCAGTCACCACAGCCATGCATGGGCTCTGTTCTGTGAGATGGTGAGGAATGAAATGGAGCCAAATGCTTTTACTTTTTCTAGTGTGCTGAAGGCTTGTAAAGGCATGAAAGCTCTTTCGTGTGGTGCATTGGTTCATGGGGGGGCTATCAAGCAAGGCATGCAGGGATCCATTTATGTGGAAAATGCACTCATGGACATGTATGCTACTTGTTGTGCTAGCATGGACGACGCATGCATGGTCTTTAATGATATTCATGAAAAAAATGATGTGTCATGGACTACTTTGATCACTGGCTTCACTCACAGAGGTAATGGCTATAGCGGGCTTCAAGTTTTCCGCCAAATGTTGCTGGAGGGAGCAGAACTGAACCCATTTAGCTTTTCAATTGCAATTAGAGCGTGTGCTTCAATCGGGTCGCATACTTTTGGCAAGCAAATACATTCAGCAGTGATTAAACACGGATTTGAGTCCAATCTTCCTGTCATGAATTCGATACTGGACATGTATTGCAGGTTTGGTTGTTTATCAGAGGCAAATCAGTACTTCCATGAAATGCCTCAAAGAGATTTGATCACATGGAACACCTTAATTTCCGGATATGAAAGATTTGATTCTAAAGAGTCCCTACTTATATTTTCGCATATGGATACAGAAGGGTTTAGTCCAAATAGCTTCACATTTTGCAGCGTCATATCAGCATGTGCTAACTTAGCAGTTTTAAACTATGGTGAACAAGTTCATGGCAGAATTATTCGGGGAGGCCTTAATAAGAATTTGGCATTGGCTAATGCCCTTGTTGACATGTATGCCAAGTGTGGAAGCATAACTGACGCACACAAAATTTTCAGTCAAATGTCTCATAGAAATTTAGTCTCTTGGACTTCCATGATGATCGGATATGGGGCTCATGGATATGGAAAAGAGGCTGTTGAATTATTTGATGAGATGGTAAAATCAGGTATAAGACCTGATCAAATAGTGTTCATGGCAGTTCTGAGTGCTTGCAGTCACGCCGGACTCGTTGATGAAGGCTTGAGGTATTTCAAATCTATGATAAATGATTATAAAATTACTCCAGATCAGGACATTTATGGGTGTGTGGTGGATTTGCTAGGCCGTGCTGGGCGAGTTGAGGAGGCTTATGAATTAATCGAGAGTATGCCATTTAAGCCGGATGAGTCTGTTTGGGGTGCACTTCTTGGAGCTTGTAAAGAACATGAGCTTCCACATCTAGGCAAAGTGGCTGCTCGGAGGATGTTAGATTTGAGGCCAAATATGGTGGGCACATATGTGATGTTGTCAAATATTTATGCAGCTGAAGGTGAATGGGGGGAATTTGCGAATACAAGGAAGTTGATGAGAGGTATGGAGAATAAGAAAGAGGCGGGAAGGAGTTGGATTGAGGTAAGAAACCAGGTTTATAGTTTTGTTGTAGGAGATAAGGTGGGTTCTCATATAAAGTTGGTATATGGAGTTTTGGAAGTTATGATTTTGCATATGAAAGAGGCAGAGCACATAAATGATTTAAATTGCTCTATGCATGACCTAGTTGATGGAACTTGA

Protein Analysis

608

Amino Acids

67.87

Weight (kDa)

6.34

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014343)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1326
Acc36I ACCTGC 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 854
AciI CCGC 3 cut(s) 582, 598, 1646
AclWI GGATC 2 cut(s) 420, 433
AcsI RAATTY 7 cut(s) 13, 142, 748, 1033, 1101, 1126, 1595
AcuI CTGAAG 3 cut(s) 53, 368, 1599
AfaI GTAC 2 cut(s) 251, 803
AfiI CCNNNNNNNGG 2 cut(s) 280, 1493
AflIII ACRYGT 4 cut(s) 252, 456, 762, 1062
AgsI TTSAA 7 cut(s) 99, 164, 590, 645, 669, 1193, 1306
AjiI CACGTC 2 cut(s) 220, 255
AjnI CCWGG 1 cut(s) 1674
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AleI CACNNNNGTG 2 cut(s) 70, 1550
AluBI AGCT 8 cut(s) 137, 193, 371, 639, 933, 1466, 1483, 1577
AluI AGCT 8 cut(s) 137, 193, 371, 639, 933, 1466, 1483, 1577
Alw21I GWGCWC 3 cut(s) 8, 1456, 1776
Alw26I GTCTC 3 cut(s) 210, 1122, 1138
Alw44I GTGCAC 1 cut(s) 1452
AlwI GGATC 2 cut(s) 420, 433
Aor13HI TCCGGA 1 cut(s) 854
AoxI GGCC 4 cut(s) 75, 1021, 1375, 1529
ApaI GGGCCC 1 cut(s) 79
ApaLI GTGCAC 1 cut(s) 1452
ApeKI GCWGC 3 cut(s) 945, 1505, 1574
ApoI RAATTY 7 cut(s) 13, 142, 748, 1033, 1101, 1126, 1595
AseI ATTAAT 2 cut(s) 173, 1409
Asp700I GAANNNNTTC 1 cut(s) 996
AspS9I GGNCC 2 cut(s) 75, 76
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 4 cut(s) 257, 313, 1001, 1595
AsuNHI GCTAGC 1 cut(s) 476
BaeGI GKGCMC 3 cut(s) 79, 1456, 1547
BamHI GGATCC 1 cut(s) 425
BanII GRGCYC 3 cut(s) 79, 286, 1168
Bbv12I GWGCWC 3 cut(s) 8, 1456, 1776
BbvI GCAGC 3 cut(s) 957, 1492, 1586
BccI CCATC 4 cut(s) 112, 292, 1201, 1808
BceAI ACGGC 1 cut(s) 1362
BciT130I CCWGG 1 cut(s) 1676
BciVI GTATCC 1 cut(s) 901
BclI TGATCA 3 cut(s) 546, 831, 1231
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 3 cut(s) 210, 1122, 1138
BfaI CTAG 5 cut(s) 339, 477, 1373, 1493, 1808
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 762
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 3 cut(s) 946, 1506, 1575
BlsI GCNGC 3 cut(s) 947, 1507, 1576
BmcAI AGTACT 1 cut(s) 803
Bme1390I CCNGG 2 cut(s) 79, 1676
BmgBI CACGTC 2 cut(s) 220, 255
BmgT120I GGNCC 2 cut(s) 75, 76
BmiI GGNNCC 3 cut(s) 77, 318, 427
BmrFI CCNGG 2 cut(s) 79, 1676
BmtI GCTAGC 1 cut(s) 480
BpmI CTGGAG 2 cut(s) 632, 1320
BpuEI CTTGAG 1 cut(s) 1315
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 854
BsaXI ACNNNNNCTCC 2 cut(s) 1689, 1719
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 1493
Bse1I ACTGG 2 cut(s) 556, 762
BseAI TCCGGA 1 cut(s) 854
BseBI CCWGG 1 cut(s) 1676
BseGI GGATG 2 cut(s) 1441, 1521
BseLI CCNNNNNNNGG 2 cut(s) 280, 1493
BseMII CTCAG 1 cut(s) 1247
BseNI ACTGG 2 cut(s) 556, 762
BseRI GAGGAG 1 cut(s) 1409
BseSI GKGCMC 3 cut(s) 79, 1456, 1547
BseXI GCAGC 3 cut(s) 957, 1492, 1586
BseYI CCCAGC 2 cut(s) 245, 1382
BshFI GGCC 4 cut(s) 77, 1023, 1377, 1531
BsiHKAI GWGCWC 3 cut(s) 8, 1456, 1776
BsiSI CCGG 5 cut(s) 79, 209, 855, 1275, 1433
BslFI GGGAC 1 cut(s) 868
BslI CCNNNNNNNGG 2 cut(s) 280, 1493
BsmAI GTCTC 3 cut(s) 210, 1122, 1138
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 868
BsnI GGCC 4 cut(s) 77, 1023, 1377, 1531
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 7 cut(s) 8, 79, 286, 1168, 1456, 1547, 1776
Bsp13I TCCGGA 1 cut(s) 854
Bsp143I GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
BspACI CCGC 3 cut(s) 582, 598, 1646
BspANI GGCC 4 cut(s) 77, 1023, 1377, 1531
BspCNI CTCAG 1 cut(s) 1248
BspEI TCCGGA 1 cut(s) 854
BspHI TCATGA 2 cut(s) 514, 744
BspLI GGNNCC 3 cut(s) 77, 318, 427
BspMI ACCTGC 1 cut(s) 762
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 2 cut(s) 420, 433
BsrI ACTGG 2 cut(s) 556, 762
BssMI GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
Bst2UI CCWGG 1 cut(s) 1676
BstAPI GCANNNNNTGC 2 cut(s) 233, 418
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 6 cut(s) 419, 478, 493, 584, 692, 1264
BstDEI CTNAG 2 cut(s) 970, 1256
BstF5I GGATG 2 cut(s) 1441, 1521
BstKTI GATC 6 cut(s) 428, 549, 834, 1155, 1234, 1342
BstMAI GTCTC 3 cut(s) 210, 1122, 1138
BstMBI GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
BstMWI GCNNNNNNNGC 6 cut(s) 233, 242, 418, 656, 971, 1429
BstNI CCWGG 1 cut(s) 1676
BstNSI RCATGY 6 cut(s) 421, 460, 495, 766, 963, 1066
BstSCI CCNGG 2 cut(s) 77, 1674
BstSFI CTRYAG 1 cut(s) 577
BstSLI GKGCMC 3 cut(s) 79, 1456, 1547
BstV1I GCAGC 3 cut(s) 957, 1492, 1586
BstX2I RGATCY 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 1 cut(s) 425
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 4 cut(s) 77, 1023, 1377, 1531
BtrI CACGTC 2 cut(s) 220, 255
BtsCI GGATG 2 cut(s) 1441, 1521
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 3 cut(s) 77, 549, 714
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 6 cut(s) 419, 478, 493, 584, 692, 1264
CciI TCATGA 2 cut(s) 514, 744
Cfr13I GGNCC 2 cut(s) 75, 76
CseI GACGC 3 cut(s) 497, 937, 1100
CsiI ACCWGGT 1 cut(s) 1674
Csp6I GTAC 2 cut(s) 250, 802
CspCI CAANNNNNGTGG 2 cut(s) 1521, 1556
CviQI GTAC 2 cut(s) 250, 802
DdeI CTNAG 2 cut(s) 970, 1256
DpnI GATC 6 cut(s) 427, 548, 833, 1154, 1233, 1341
DpnII GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
DraI TTTAAA 2 cut(s) 981, 1788
EciI GGCGGA 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 1023
Eco24I GRGCYC 3 cut(s) 79, 286, 1168
Eco57I CTGAAG 3 cut(s) 53, 368, 1599
EcoRI GAATTC 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 1674
EcoT22I ATGCAT 3 cut(s) 280, 497, 1803
EcoT38I GRGCYC 3 cut(s) 79, 286, 1168
Esp3I CGTCTC 1 cut(s) 210
FaqI GGGAC 1 cut(s) 868
FauI CCCGC 2 cut(s) 575, 1639
FauNDI CATATG 3 cut(s) 903, 1549, 1758
FbaI TGATCA 3 cut(s) 546, 831, 1231
Fnu4HI GCNGC 3 cut(s) 946, 1506, 1575
FokI GGATG 2 cut(s) 1448, 1528
FriOI GRGCYC 3 cut(s) 79, 286, 1168
Fsp4HI GCNGC 3 cut(s) 946, 1506, 1575
FspBI CTAG 5 cut(s) 339, 477, 1373, 1493, 1808
GluI GCNGC 3 cut(s) 946, 1506, 1575
GsaI CCCAGC 2 cut(s) 249, 1386
GsuI CTGGAG 2 cut(s) 632, 1320
HaeIII GGCC 4 cut(s) 77, 1023, 1377, 1531
HapII CCGG 5 cut(s) 79, 209, 855, 1275, 1433
HgaI GACGC 3 cut(s) 497, 937, 1100
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HinfI GANTC 5 cut(s) 728, 872, 881, 1278, 1439
HpaII CCGG 5 cut(s) 79, 209, 855, 1275, 1433
HphI GGTGA 4 cut(s) 257, 313, 1001, 1595
Hpy166II GTNNAC 4 cut(s) 252, 992, 1060, 1454
Hpy188I TCNGA 5 cut(s) 59, 790, 1157, 1257, 1512
Hpy188III TCNNGA 7 cut(s) 24, 515, 745, 855, 1337, 1343, 1414
Hpy8I GTNNAC 4 cut(s) 252, 992, 1060, 1454
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 5 cut(s) 343, 908, 1283, 1574, 1644
HpyCH4IV ACGT 3 cut(s) 187, 219, 254
HpyF10VI GCNNNNNNNGC 6 cut(s) 233, 242, 418, 656, 971, 1429
HpyF3I CTNAG 2 cut(s) 970, 1256
HpySE526I ACGT 3 cut(s) 187, 219, 254
Kpn2I TCCGGA 1 cut(s) 854
Ksp22I TGATCA 3 cut(s) 546, 831, 1231
Kzo9I GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
LmnI GCTCC 3 cut(s) 316, 617, 1463
Lsp1109I GCAGC 3 cut(s) 957, 1492, 1586
MabI ACCWGGT 1 cut(s) 1674
MaeI CTAG 5 cut(s) 339, 477, 1373, 1493, 1808
MaeII ACGT 3 cut(s) 187, 219, 254
MaeIII GTNAC 2 cut(s) 263, 1268
MalI GATC 6 cut(s) 427, 548, 833, 1154, 1233, 1341
MboI GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
MboII GAAGA 1 cut(s) 728
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 7 cut(s) 8, 79, 286, 1168, 1456, 1547, 1776
MlyI GAGTC 4 cut(s) 737, 890, 1272, 1448
MmeI TCCRAC 1 cut(s) 1637
Mph1103I ATGCAT 3 cut(s) 280, 497, 1803
MroI TCCGGA 1 cut(s) 854
MroXI GAANNNNTTC 1 cut(s) 996
MslI CAYNNNNRTG 7 cut(s) 70, 273, 434, 455, 1173, 1550, 1779
MspA1I CMGCKG 1 cut(s) 1577
MspI CCGG 5 cut(s) 79, 209, 855, 1275, 1433
MspR9I CCNGG 2 cut(s) 79, 1676
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 1676
MwoI GCNNNNNNNGC 6 cut(s) 233, 242, 418, 656, 971, 1429
NciI CCSGG 1 cut(s) 79
NdeI CATATG 3 cut(s) 903, 1549, 1758
NdeII GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
NheI GCTAGC 1 cut(s) 476
NlaIV GGNNCC 3 cut(s) 77, 318, 427
NmuCI GTSAC 2 cut(s) 263, 1268
NsiI ATGCAT 3 cut(s) 280, 497, 1803
NspI RCATGY 6 cut(s) 421, 460, 495, 766, 963, 1066
OliI CACNNNNGTG 2 cut(s) 70, 1550
PacI TTAATTAA 1 cut(s) 150
PaeI GCATGC 2 cut(s) 421, 495
PagI TCATGA 2 cut(s) 514, 744
PceI AGGCCT 1 cut(s) 1023
PciI ACATGT 3 cut(s) 456, 762, 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 1278
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 1 cut(s) 872
PkrI GCNGC 3 cut(s) 947, 1507, 1576
PleI GAGTC 4 cut(s) 736, 889, 1272, 1447
PpsI GAGTC 4 cut(s) 736, 889, 1272, 1447
Ppu21I YACGTR 1 cut(s) 188
PscI ACATGT 3 cut(s) 456, 762, 1062
PshBI ATTAAT 2 cut(s) 173, 1409
PsiI TTATAA 1 cut(s) 1326
Psp6I CCWGG 1 cut(s) 1674
PspFI CCCAGC 2 cut(s) 245, 1382
PspGI CCWGG 1 cut(s) 1674
PspN4I GGNNCC 3 cut(s) 77, 318, 427
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 75, 76
PsuI RGATCY 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 1577
RsaI GTAC 2 cut(s) 251, 803
RsaNI GTAC 2 cut(s) 250, 802
RseI CAYNNNNRTG 7 cut(s) 70, 273, 434, 455, 1173, 1550, 1779
SatI GCNGC 3 cut(s) 946, 1506, 1575
Sau3AI GATC 6 cut(s) 425, 546, 831, 1152, 1231, 1339
Sau96I GGNCC 2 cut(s) 75, 76
ScaI AGTACT 1 cut(s) 803
SchI GAGTC 4 cut(s) 737, 890, 1272, 1448
ScrFI CCNGG 2 cut(s) 79, 1676
SduI GDGCHC 7 cut(s) 8, 79, 286, 1168, 1456, 1547, 1776
SexAI ACCWGGT 1 cut(s) 1674
SfcI CTRYAG 1 cut(s) 577
SmiI ATTTAAAT 1 cut(s) 1788
SmiMI CAYNNNNRTG 7 cut(s) 70, 273, 434, 455, 1173, 1550, 1779
SmlI CTYRAG 1 cut(s) 1294
SmoI CTYRAG 1 cut(s) 1294
SphI GCATGC 2 cut(s) 421, 495
SseBI AGGCCT 1 cut(s) 1023
SsiI CCGC 3 cut(s) 582, 598, 1646
SspI AATATT 2 cut(s) 130, 1567
SspMI CTAG 5 cut(s) 339, 477, 1373, 1493, 1808
StuI AGGCCT 1 cut(s) 1023
StyD4I CCNGG 2 cut(s) 77, 1674
SwaI ATTTAAAT 1 cut(s) 1788
TaiI ACGT 3 cut(s) 190, 222, 257
TaqI TCGA 3 cut(s) 198, 752, 1413
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 1 cut(s) 872
TscAI CASTG 3 cut(s) 77, 556, 714
TseFI GTSAC 2 cut(s) 263, 1268
TseI GCWGC 3 cut(s) 945, 1505, 1574
Tsp45I GTSAC 2 cut(s) 263, 1268
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 3 cut(s) 77, 556, 714
VneI GTGCAC 1 cut(s) 1452
VspI ATTAAT 2 cut(s) 173, 1409
XapI RAATTY 7 cut(s) 13, 142, 748, 1033, 1101, 1126, 1595
XceI RCATGY 6 cut(s) 421, 460, 495, 766, 963, 1066
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 5 cut(s) 339, 477, 1373, 1493, 1808
ZrmI AGTACT 1 cut(s) 803
Zsp2I ATGCAT 3 cut(s) 280, 497, 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.