Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56570 AT1G56570 |
| fragaria_vesca | FvH4_6g07860 |
| prunus_persica | Prupe.6G310000_v2.0.a1 |
| pyrus_communis | pycom04g16900 |
| rosa_chinensis | RchiOBHm_Chr3g0457561 |
| rosa_laevigata | RLG00000025210 |
| rosa_multiflora | Rmu_co8283243.1_g000001 Rmu_sc0007404.1_g000004 Rmu_sc0035246.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00421730 |
| rosa_rugosa | Rorug03G0021400 |
| rosa_samantha | Rh3AG082000 Rh3BG084200 Rh3CG084400 Rh3DG085700 |
| rosa_wichuraiana | Rw3G007040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1326 |
| Acc36I | ACCTGC | 1 cut(s) | 762 |
| AccIII | TCCGGA | 1 cut(s) | 854 |
| AciI | CCGC | 3 cut(s) | 582, 598, 1646 |
| AclWI | GGATC | 2 cut(s) | 420, 433 |
| AcsI | RAATTY | 7 cut(s) | 13, 142, 748, 1033, 1101, 1126, 1595 |
| AcuI | CTGAAG | 3 cut(s) | 53, 368, 1599 |
| AfaI | GTAC | 2 cut(s) | 251, 803 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 280, 1493 |
| AflIII | ACRYGT | 4 cut(s) | 252, 456, 762, 1062 |
| AgsI | TTSAA | 7 cut(s) | 99, 164, 590, 645, 669, 1193, 1306 |
| AjiI | CACGTC | 2 cut(s) | 220, 255 |
| AjnI | CCWGG | 1 cut(s) | 1674 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1025, 1057 |
| AleI | CACNNNNGTG | 2 cut(s) | 70, 1550 |
| AluBI | AGCT | 8 cut(s) | 137, 193, 371, 639, 933, 1466, 1483, 1577 |
| AluI | AGCT | 8 cut(s) | 137, 193, 371, 639, 933, 1466, 1483, 1577 |
| Alw21I | GWGCWC | 3 cut(s) | 8, 1456, 1776 |
| Alw26I | GTCTC | 3 cut(s) | 210, 1122, 1138 |
| Alw44I | GTGCAC | 1 cut(s) | 1452 |
| AlwI | GGATC | 2 cut(s) | 420, 433 |
| Aor13HI | TCCGGA | 1 cut(s) | 854 |
| AoxI | GGCC | 4 cut(s) | 75, 1021, 1375, 1529 |
| ApaI | GGGCCC | 1 cut(s) | 79 |
| ApaLI | GTGCAC | 1 cut(s) | 1452 |
| ApeKI | GCWGC | 3 cut(s) | 945, 1505, 1574 |
| ApoI | RAATTY | 7 cut(s) | 13, 142, 748, 1033, 1101, 1126, 1595 |
| AseI | ATTAAT | 2 cut(s) | 173, 1409 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 996 |
| AspS9I | GGNCC | 2 cut(s) | 75, 76 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 4 cut(s) | 257, 313, 1001, 1595 |
| AsuNHI | GCTAGC | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 3 cut(s) | 79, 1456, 1547 |
| BamHI | GGATCC | 1 cut(s) | 425 |
| BanII | GRGCYC | 3 cut(s) | 79, 286, 1168 |
| Bbv12I | GWGCWC | 3 cut(s) | 8, 1456, 1776 |
| BbvI | GCAGC | 3 cut(s) | 957, 1492, 1586 |
| BccI | CCATC | 4 cut(s) | 112, 292, 1201, 1808 |
| BceAI | ACGGC | 1 cut(s) | 1362 |
| BciT130I | CCWGG | 1 cut(s) | 1676 |
| BciVI | GTATCC | 1 cut(s) | 901 |
| BclI | TGATCA | 3 cut(s) | 546, 831, 1231 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BcoDI | GTCTC | 3 cut(s) | 210, 1122, 1138 |
| BfaI | CTAG | 5 cut(s) | 339, 477, 1373, 1493, 1808 |
| BfmI | CTRYAG | 1 cut(s) | 577 |
| BfuAI | ACCTGC | 1 cut(s) | 762 |
| BfuI | GTATCC | 1 cut(s) | 901 |
| BisI | GCNGC | 3 cut(s) | 946, 1506, 1575 |
| BlsI | GCNGC | 3 cut(s) | 947, 1507, 1576 |
| BmcAI | AGTACT | 1 cut(s) | 803 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 1676 |
| BmgBI | CACGTC | 2 cut(s) | 220, 255 |
| BmgT120I | GGNCC | 2 cut(s) | 75, 76 |
| BmiI | GGNNCC | 3 cut(s) | 77, 318, 427 |
| BmrFI | CCNGG | 2 cut(s) | 79, 1676 |
| BmtI | GCTAGC | 1 cut(s) | 480 |
| BpmI | CTGGAG | 2 cut(s) | 632, 1320 |
| BpuEI | CTTGAG | 1 cut(s) | 1315 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| BsaAI | YACGTR | 1 cut(s) | 188 |
| BsaWI | WCCGGW | 1 cut(s) | 854 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1689, 1719 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 280, 1493 |
| Bse1I | ACTGG | 2 cut(s) | 556, 762 |
| BseAI | TCCGGA | 1 cut(s) | 854 |
| BseBI | CCWGG | 1 cut(s) | 1676 |
| BseGI | GGATG | 2 cut(s) | 1441, 1521 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 280, 1493 |
| BseMII | CTCAG | 1 cut(s) | 1247 |
| BseNI | ACTGG | 2 cut(s) | 556, 762 |
| BseRI | GAGGAG | 1 cut(s) | 1409 |
| BseSI | GKGCMC | 3 cut(s) | 79, 1456, 1547 |
| BseXI | GCAGC | 3 cut(s) | 957, 1492, 1586 |
| BseYI | CCCAGC | 2 cut(s) | 245, 1382 |
| BshFI | GGCC | 4 cut(s) | 77, 1023, 1377, 1531 |
| BsiHKAI | GWGCWC | 3 cut(s) | 8, 1456, 1776 |
| BsiSI | CCGG | 5 cut(s) | 79, 209, 855, 1275, 1433 |
| BslFI | GGGAC | 1 cut(s) | 868 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 280, 1493 |
| BsmAI | GTCTC | 3 cut(s) | 210, 1122, 1138 |
| BsmBI | CGTCTC | 1 cut(s) | 210 |
| BsmFI | GGGAC | 1 cut(s) | 868 |
| BsnI | GGCC | 4 cut(s) | 77, 1023, 1377, 1531 |
| Bsp120I | GGGCCC | 1 cut(s) | 75 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 79, 286, 1168, 1456, 1547, 1776 |
| Bsp13I | TCCGGA | 1 cut(s) | 854 |
| Bsp143I | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| BspACI | CCGC | 3 cut(s) | 582, 598, 1646 |
| BspANI | GGCC | 4 cut(s) | 77, 1023, 1377, 1531 |
| BspCNI | CTCAG | 1 cut(s) | 1248 |
| BspEI | TCCGGA | 1 cut(s) | 854 |
| BspHI | TCATGA | 2 cut(s) | 514, 744 |
| BspLI | GGNNCC | 3 cut(s) | 77, 318, 427 |
| BspMI | ACCTGC | 1 cut(s) | 762 |
| BspOI | GCTAGC | 1 cut(s) | 480 |
| BspPI | GGATC | 2 cut(s) | 420, 433 |
| BsrI | ACTGG | 2 cut(s) | 556, 762 |
| BssMI | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| Bst2UI | CCWGG | 1 cut(s) | 1676 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 233, 418 |
| BstBAI | YACGTR | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 6 cut(s) | 419, 478, 493, 584, 692, 1264 |
| BstDEI | CTNAG | 2 cut(s) | 970, 1256 |
| BstF5I | GGATG | 2 cut(s) | 1441, 1521 |
| BstKTI | GATC | 6 cut(s) | 428, 549, 834, 1155, 1234, 1342 |
| BstMAI | GTCTC | 3 cut(s) | 210, 1122, 1138 |
| BstMBI | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 233, 242, 418, 656, 971, 1429 |
| BstNI | CCWGG | 1 cut(s) | 1676 |
| BstNSI | RCATGY | 6 cut(s) | 421, 460, 495, 766, 963, 1066 |
| BstSCI | CCNGG | 2 cut(s) | 77, 1674 |
| BstSFI | CTRYAG | 1 cut(s) | 577 |
| BstSLI | GKGCMC | 3 cut(s) | 79, 1456, 1547 |
| BstV1I | GCAGC | 3 cut(s) | 957, 1492, 1586 |
| BstX2I | RGATCY | 1 cut(s) | 425 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 436 |
| BstYI | RGATCY | 1 cut(s) | 425 |
| BsuI | GTATCC | 1 cut(s) | 901 |
| BsuRI | GGCC | 4 cut(s) | 77, 1023, 1377, 1531 |
| BtrI | CACGTC | 2 cut(s) | 220, 255 |
| BtsCI | GGATG | 2 cut(s) | 1441, 1521 |
| BtsI | GCAGTG | 1 cut(s) | 714 |
| BtsIMutI | CAGTG | 3 cut(s) | 77, 549, 714 |
| BveI | ACCTGC | 1 cut(s) | 762 |
| Cac8I | GCNNGC | 6 cut(s) | 419, 478, 493, 584, 692, 1264 |
| CciI | TCATGA | 2 cut(s) | 514, 744 |
| Cfr13I | GGNCC | 2 cut(s) | 75, 76 |
| CseI | GACGC | 3 cut(s) | 497, 937, 1100 |
| CsiI | ACCWGGT | 1 cut(s) | 1674 |
| Csp6I | GTAC | 2 cut(s) | 250, 802 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1521, 1556 |
| CviQI | GTAC | 2 cut(s) | 250, 802 |
| DdeI | CTNAG | 2 cut(s) | 970, 1256 |
| DpnI | GATC | 6 cut(s) | 427, 548, 833, 1154, 1233, 1341 |
| DpnII | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| DraI | TTTAAA | 2 cut(s) | 981, 1788 |
| EciI | GGCGGA | 1 cut(s) | 587 |
| Eco147I | AGGCCT | 1 cut(s) | 1023 |
| Eco24I | GRGCYC | 3 cut(s) | 79, 286, 1168 |
| Eco57I | CTGAAG | 3 cut(s) | 53, 368, 1599 |
| EcoRI | GAATTC | 1 cut(s) | 748 |
| EcoRII | CCWGG | 1 cut(s) | 1674 |
| EcoT22I | ATGCAT | 3 cut(s) | 280, 497, 1803 |
| EcoT38I | GRGCYC | 3 cut(s) | 79, 286, 1168 |
| Esp3I | CGTCTC | 1 cut(s) | 210 |
| FaqI | GGGAC | 1 cut(s) | 868 |
| FauI | CCCGC | 2 cut(s) | 575, 1639 |
| FauNDI | CATATG | 3 cut(s) | 903, 1549, 1758 |
| FbaI | TGATCA | 3 cut(s) | 546, 831, 1231 |
| Fnu4HI | GCNGC | 3 cut(s) | 946, 1506, 1575 |
| FokI | GGATG | 2 cut(s) | 1448, 1528 |
| FriOI | GRGCYC | 3 cut(s) | 79, 286, 1168 |
| Fsp4HI | GCNGC | 3 cut(s) | 946, 1506, 1575 |
| FspBI | CTAG | 5 cut(s) | 339, 477, 1373, 1493, 1808 |
| GluI | GCNGC | 3 cut(s) | 946, 1506, 1575 |
| GsaI | CCCAGC | 2 cut(s) | 249, 1386 |
| GsuI | CTGGAG | 2 cut(s) | 632, 1320 |
| HaeIII | GGCC | 4 cut(s) | 77, 1023, 1377, 1531 |
| HapII | CCGG | 5 cut(s) | 79, 209, 855, 1275, 1433 |
| HgaI | GACGC | 3 cut(s) | 497, 937, 1100 |
| HincII | GTYRAC | 1 cut(s) | 1060 |
| HindII | GTYRAC | 1 cut(s) | 1060 |
| HinfI | GANTC | 5 cut(s) | 728, 872, 881, 1278, 1439 |
| HpaII | CCGG | 5 cut(s) | 79, 209, 855, 1275, 1433 |
| HphI | GGTGA | 4 cut(s) | 257, 313, 1001, 1595 |
| Hpy166II | GTNNAC | 4 cut(s) | 252, 992, 1060, 1454 |
| Hpy188I | TCNGA | 5 cut(s) | 59, 790, 1157, 1257, 1512 |
| Hpy188III | TCNNGA | 7 cut(s) | 24, 515, 745, 855, 1337, 1343, 1414 |
| Hpy8I | GTNNAC | 4 cut(s) | 252, 992, 1060, 1454 |
| Hpy99I | CGWCG | 1 cut(s) | 491 |
| HpyAV | CCTTC | 5 cut(s) | 343, 908, 1283, 1574, 1644 |
| HpyCH4IV | ACGT | 3 cut(s) | 187, 219, 254 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 233, 242, 418, 656, 971, 1429 |
| HpyF3I | CTNAG | 2 cut(s) | 970, 1256 |
| HpySE526I | ACGT | 3 cut(s) | 187, 219, 254 |
| Kpn2I | TCCGGA | 1 cut(s) | 854 |
| Ksp22I | TGATCA | 3 cut(s) | 546, 831, 1231 |
| Kzo9I | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| LmnI | GCTCC | 3 cut(s) | 316, 617, 1463 |
| Lsp1109I | GCAGC | 3 cut(s) | 957, 1492, 1586 |
| MabI | ACCWGGT | 1 cut(s) | 1674 |
| MaeI | CTAG | 5 cut(s) | 339, 477, 1373, 1493, 1808 |
| MaeII | ACGT | 3 cut(s) | 187, 219, 254 |
| MaeIII | GTNAC | 2 cut(s) | 263, 1268 |
| MalI | GATC | 6 cut(s) | 427, 548, 833, 1154, 1233, 1341 |
| MboI | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| MboII | GAAGA | 1 cut(s) | 728 |
| MfeI | CAATTG | 1 cut(s) | 645 |
| MflI | RGATCY | 1 cut(s) | 425 |
| MhlI | GDGCHC | 7 cut(s) | 8, 79, 286, 1168, 1456, 1547, 1776 |
| MlyI | GAGTC | 4 cut(s) | 737, 890, 1272, 1448 |
| MmeI | TCCRAC | 1 cut(s) | 1637 |
| Mph1103I | ATGCAT | 3 cut(s) | 280, 497, 1803 |
| MroI | TCCGGA | 1 cut(s) | 854 |
| MroXI | GAANNNNTTC | 1 cut(s) | 996 |
| MslI | CAYNNNNRTG | 7 cut(s) | 70, 273, 434, 455, 1173, 1550, 1779 |
| MspA1I | CMGCKG | 1 cut(s) | 1577 |
| MspI | CCGG | 5 cut(s) | 79, 209, 855, 1275, 1433 |
| MspR9I | CCNGG | 2 cut(s) | 79, 1676 |
| MunI | CAATTG | 1 cut(s) | 645 |
| MvaI | CCWGG | 1 cut(s) | 1676 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 233, 242, 418, 656, 971, 1429 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NdeI | CATATG | 3 cut(s) | 903, 1549, 1758 |
| NdeII | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| NheI | GCTAGC | 1 cut(s) | 476 |
| NlaIV | GGNNCC | 3 cut(s) | 77, 318, 427 |
| NmuCI | GTSAC | 2 cut(s) | 263, 1268 |
| NsiI | ATGCAT | 3 cut(s) | 280, 497, 1803 |
| NspI | RCATGY | 6 cut(s) | 421, 460, 495, 766, 963, 1066 |
| OliI | CACNNNNGTG | 2 cut(s) | 70, 1550 |
| PacI | TTAATTAA | 1 cut(s) | 150 |
| PaeI | GCATGC | 2 cut(s) | 421, 495 |
| PagI | TCATGA | 2 cut(s) | 514, 744 |
| PceI | AGGCCT | 1 cut(s) | 1023 |
| PciI | ACATGT | 3 cut(s) | 456, 762, 1062 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1278 |
| PdmI | GAANNNNTTC | 1 cut(s) | 996 |
| PfeI | GAWTC | 1 cut(s) | 872 |
| PkrI | GCNGC | 3 cut(s) | 947, 1507, 1576 |
| PleI | GAGTC | 4 cut(s) | 736, 889, 1272, 1447 |
| PpsI | GAGTC | 4 cut(s) | 736, 889, 1272, 1447 |
| Ppu21I | YACGTR | 1 cut(s) | 188 |
| PscI | ACATGT | 3 cut(s) | 456, 762, 1062 |
| PshBI | ATTAAT | 2 cut(s) | 173, 1409 |
| PsiI | TTATAA | 1 cut(s) | 1326 |
| Psp6I | CCWGG | 1 cut(s) | 1674 |
| PspFI | CCCAGC | 2 cut(s) | 245, 1382 |
| PspGI | CCWGG | 1 cut(s) | 1674 |
| PspN4I | GGNNCC | 3 cut(s) | 77, 318, 427 |
| PspOMI | GGGCCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 2 cut(s) | 75, 76 |
| PsuI | RGATCY | 1 cut(s) | 425 |
| PvuII | CAGCTG | 1 cut(s) | 1577 |
| RsaI | GTAC | 2 cut(s) | 251, 803 |
| RsaNI | GTAC | 2 cut(s) | 250, 802 |
| RseI | CAYNNNNRTG | 7 cut(s) | 70, 273, 434, 455, 1173, 1550, 1779 |
| SatI | GCNGC | 3 cut(s) | 946, 1506, 1575 |
| Sau3AI | GATC | 6 cut(s) | 425, 546, 831, 1152, 1231, 1339 |
| Sau96I | GGNCC | 2 cut(s) | 75, 76 |
| ScaI | AGTACT | 1 cut(s) | 803 |
| SchI | GAGTC | 4 cut(s) | 737, 890, 1272, 1448 |
| ScrFI | CCNGG | 2 cut(s) | 79, 1676 |
| SduI | GDGCHC | 7 cut(s) | 8, 79, 286, 1168, 1456, 1547, 1776 |
| SexAI | ACCWGGT | 1 cut(s) | 1674 |
| SfcI | CTRYAG | 1 cut(s) | 577 |
| SmiI | ATTTAAAT | 1 cut(s) | 1788 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 70, 273, 434, 455, 1173, 1550, 1779 |
| SmlI | CTYRAG | 1 cut(s) | 1294 |
| SmoI | CTYRAG | 1 cut(s) | 1294 |
| SphI | GCATGC | 2 cut(s) | 421, 495 |
| SseBI | AGGCCT | 1 cut(s) | 1023 |
| SsiI | CCGC | 3 cut(s) | 582, 598, 1646 |
| SspI | AATATT | 2 cut(s) | 130, 1567 |
| SspMI | CTAG | 5 cut(s) | 339, 477, 1373, 1493, 1808 |
| StuI | AGGCCT | 1 cut(s) | 1023 |
| StyD4I | CCNGG | 2 cut(s) | 77, 1674 |
| SwaI | ATTTAAAT | 1 cut(s) | 1788 |
| TaiI | ACGT | 3 cut(s) | 190, 222, 257 |
| TaqI | TCGA | 3 cut(s) | 198, 752, 1413 |
| TatI | WGTACW | 1 cut(s) | 801 |
| TfiI | GAWTC | 1 cut(s) | 872 |
| TscAI | CASTG | 3 cut(s) | 77, 556, 714 |
| TseFI | GTSAC | 2 cut(s) | 263, 1268 |
| TseI | GCWGC | 3 cut(s) | 945, 1505, 1574 |
| Tsp45I | GTSAC | 2 cut(s) | 263, 1268 |
| TspGWI | ACGGA | 1 cut(s) | 735 |
| TspRI | CASTG | 3 cut(s) | 77, 556, 714 |
| VneI | GTGCAC | 1 cut(s) | 1452 |
| VspI | ATTAAT | 2 cut(s) | 173, 1409 |
| XapI | RAATTY | 7 cut(s) | 13, 142, 748, 1033, 1101, 1126, 1595 |
| XceI | RCATGY | 6 cut(s) | 421, 460, 495, 766, 963, 1066 |
| XmnI | GAANNNNTTC | 1 cut(s) | 996 |
| XspI | CTAG | 5 cut(s) | 339, 477, 1373, 1493, 1808 |
| ZrmI | AGTACT | 1 cut(s) | 803 |
| Zsp2I | ATGCAT | 3 cut(s) | 280, 497, 1803 |