Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56570 AT1G56570 |
| fragaria_vesca | FvH4_6g07860 |
| prunus_persica | Prupe.6G310000_v2.0.a1 |
| pyrus_communis | pycom04g16900 |
| rosa_chinensis | RchiOBHm_Chr3g0457561 |
| rosa_laevigata | RLG00000025210 |
| rosa_multiflora | Rmu_co8283243.1_g000001 Rmu_sc0007404.1_g000004 Rmu_sc0035246.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00421730 |
| rosa_rugosa | Rorug03G0021400 |
| rosa_samantha | Rh3AG082000 Rh3BG084200 Rh3CG084400 Rh3DG085700 |
| rosa_wichuraiana | Rw3G007040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 860 |
| AciI | CCGC | 3 cut(s) | 588, 656, 1083 |
| AclWI | GGATC | 2 cut(s) | 872, 885 |
| AcsI | RAATTY | 2 cut(s) | 754, 1039 |
| AcuI | CTGAAG | 2 cut(s) | 59, 1605 |
| AfaI | GTAC | 2 cut(s) | 24, 257 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 286 |
| AflIII | ACRYGT | 4 cut(s) | 258, 462, 768, 1068 |
| AgsI | TTSAA | 4 cut(s) | 675, 759, 988, 1199 |
| AhlI | ACTAGT | 1 cut(s) | 19 |
| AjiI | CACGTC | 2 cut(s) | 226, 261 |
| AjnI | CCWGG | 4 cut(s) | 84, 195, 214, 1142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1031, 1063 |
| AleI | CACNNNNGTG | 3 cut(s) | 76, 573, 1556 |
| AluBI | AGCT | 7 cut(s) | 377, 631, 645, 665, 1472, 1489, 1583 |
| AluI | AGCT | 7 cut(s) | 377, 631, 645, 665, 1472, 1489, 1583 |
| Alw21I | GWGCWC | 5 cut(s) | 8, 354, 379, 1462, 1782 |
| Alw26I | GTCTC | 2 cut(s) | 216, 1144 |
| AlwI | GGATC | 2 cut(s) | 872, 885 |
| Aor13HI | TCCGGA | 1 cut(s) | 860 |
| AoxI | GGCC | 2 cut(s) | 1027, 1282 |
| ApeKI | GCWGC | 3 cut(s) | 951, 1511, 1580 |
| ApoI | RAATTY | 2 cut(s) | 754, 1039 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 332, 1002 |
| AspLEI | GCGC | 2 cut(s) | 392, 671 |
| AspS9I | GGNCC | 2 cut(s) | 82, 432 |
| AsuC2I | CCSGG | 2 cut(s) | 253, 1682 |
| AsuHPI | GGTGA | 6 cut(s) | 85, 111, 263, 319, 587, 1007 |
| AsuII | TTCGAA | 1 cut(s) | 1311 |
| AvaII | GGWCC | 2 cut(s) | 82, 432 |
| BamHI | GGATCC | 1 cut(s) | 877 |
| BanII | GRGCYC | 2 cut(s) | 379, 1174 |
| BauI | CACGAG | 1 cut(s) | 1484 |
| Bbv12I | GWGCWC | 5 cut(s) | 8, 354, 379, 1462, 1782 |
| BbvI | GCAGC | 3 cut(s) | 963, 1498, 1592 |
| BccI | CCATC | 5 cut(s) | 298, 313, 443, 572, 1207 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1055, 1089 |
| BciT130I | CCWGG | 4 cut(s) | 86, 197, 216, 1144 |
| BclI | TGATCA | 1 cut(s) | 552 |
| BcnI | CCSGG | 2 cut(s) | 253, 1682 |
| BcoDI | GTCTC | 2 cut(s) | 216, 1144 |
| BcuI | ACTAGT | 1 cut(s) | 19 |
| BfaI | CTAG | 5 cut(s) | 20, 882, 977, 1379, 1798 |
| BisI | GCNGC | 3 cut(s) | 952, 1512, 1581 |
| BlsI | GCNGC | 3 cut(s) | 953, 1513, 1582 |
| BmcAI | AGTACT | 1 cut(s) | 24 |
| Bme1390I | CCNGG | 6 cut(s) | 86, 197, 216, 253, 1144, 1682 |
| Bme18I | GGWCC | 2 cut(s) | 82, 432 |
| BmgBI | CACGTC | 2 cut(s) | 226, 261 |
| BmgT120I | GGNCC | 2 cut(s) | 82, 432 |
| BmiI | GGNNCC | 4 cut(s) | 83, 324, 433, 879 |
| BmrFI | CCNGG | 6 cut(s) | 86, 197, 216, 253, 1144, 1682 |
| BmsI | GCATC | 2 cut(s) | 484, 1551 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1449, 1481 |
| BpmI | CTGGAG | 2 cut(s) | 638, 1326 |
| Bpu14I | TTCGAA | 1 cut(s) | 1311 |
| BpuEI | CTTGAG | 2 cut(s) | 338, 1321 |
| BpuMI | CCSGG | 2 cut(s) | 253, 1682 |
| BsaAI | YACGTR | 1 cut(s) | 1554 |
| BsaJI | CCNNGG | 1 cut(s) | 215 |
| BsaWI | WCCGGW | 1 cut(s) | 860 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 482, 512, 1124, 1154, 1695, 1725 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 286 |
| Bse118I | RCCGGY | 1 cut(s) | 1771 |
| Bse1I | ACTGG | 3 cut(s) | 345, 562, 768 |
| BseAI | TCCGGA | 1 cut(s) | 860 |
| BseBI | CCWGG | 4 cut(s) | 86, 197, 216, 1144 |
| BseDI | CCNNGG | 1 cut(s) | 215 |
| BseGI | GGATG | 4 cut(s) | 43, 324, 499, 1447 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BseMII | CTCAG | 3 cut(s) | 930, 1253, 1529 |
| BseNI | ACTGG | 3 cut(s) | 345, 562, 768 |
| BseRI | GAGGAG | 1 cut(s) | 1415 |
| BseXI | GCAGC | 3 cut(s) | 963, 1498, 1592 |
| BshFI | GGCC | 2 cut(s) | 1029, 1284 |
| BsiHKAI | GWGCWC | 5 cut(s) | 8, 354, 379, 1462, 1782 |
| BsiSI | CCGG | 5 cut(s) | 252, 861, 1439, 1681, 1772 |
| BslFI | GGGAC | 1 cut(s) | 874 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BsmAI | GTCTC | 2 cut(s) | 216, 1144 |
| BsmBI | CGTCTC | 1 cut(s) | 216 |
| BsmFI | GGGAC | 1 cut(s) | 874 |
| BsmI | GAATGC | 3 cut(s) | 334, 429, 702 |
| BsnI | GGCC | 2 cut(s) | 1029, 1284 |
| Bsp119I | TTCGAA | 1 cut(s) | 1311 |
| Bsp1286I | GDGCHC | 6 cut(s) | 8, 354, 379, 1174, 1462, 1782 |
| Bsp13I | TCCGGA | 1 cut(s) | 860 |
| Bsp143I | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| BspACI | CCGC | 3 cut(s) | 588, 656, 1083 |
| BspANI | GGCC | 2 cut(s) | 1029, 1284 |
| BspCNI | CTCAG | 3 cut(s) | 929, 1254, 1528 |
| BspEI | TCCGGA | 1 cut(s) | 860 |
| BspHI | TCATGA | 1 cut(s) | 750 |
| BspLI | GGNNCC | 4 cut(s) | 83, 324, 433, 879 |
| BspPI | GGATC | 2 cut(s) | 872, 885 |
| BspT104I | TTCGAA | 1 cut(s) | 1311 |
| BsrFI | RCCGGY | 1 cut(s) | 1771 |
| BsrI | ACTGG | 3 cut(s) | 345, 562, 768 |
| BssAI | RCCGGY | 1 cut(s) | 1771 |
| BssECI | CCNNGG | 1 cut(s) | 215 |
| BssMI | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| BssSI | CACGAG | 1 cut(s) | 1484 |
| Bst2BI | CACGAG | 1 cut(s) | 1484 |
| Bst2UI | CCWGG | 4 cut(s) | 86, 197, 216, 1144 |
| Bst4CI | ACNGT | 1 cut(s) | 992 |
| Bst6I | CTCTTC | 1 cut(s) | 1387 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 239 |
| BstBAI | YACGTR | 1 cut(s) | 1554 |
| BstBI | TTCGAA | 1 cut(s) | 1311 |
| BstC8I | GCNNGC | 8 cut(s) | 193, 361, 484, 499, 590, 667, 1270, 1282 |
| BstDEI | CTNAG | 4 cut(s) | 916, 1135, 1262, 1515 |
| BstF5I | GGATG | 4 cut(s) | 43, 324, 499, 1447 |
| BstHHI | GCGC | 2 cut(s) | 392, 671 |
| BstKTI | GATC | 6 cut(s) | 249, 555, 880, 1161, 1240, 1348 |
| BstMAI | GTCTC | 2 cut(s) | 216, 1144 |
| BstMBI | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 239, 248, 424, 662, 977, 1435, 1478 |
| BstNI | CCWGG | 4 cut(s) | 86, 197, 216, 1144 |
| BstNSI | RCATGY | 4 cut(s) | 466, 772, 969, 1072 |
| BstSCI | CCNGG | 6 cut(s) | 84, 195, 214, 251, 1142, 1680 |
| BstV1I | GCAGC | 3 cut(s) | 963, 1498, 1592 |
| BstX2I | RGATCY | 1 cut(s) | 877 |
| BstYI | RGATCY | 1 cut(s) | 877 |
| BsuRI | GGCC | 2 cut(s) | 1029, 1284 |
| BtgZI | GCGATG | 1 cut(s) | 305 |
| BtrI | CACGTC | 2 cut(s) | 226, 261 |
| BtsCI | GGATG | 4 cut(s) | 43, 324, 499, 1447 |
| BtsI | GCAGTG | 1 cut(s) | 720 |
| BtsIMutI | CAGTG | 5 cut(s) | 83, 352, 555, 720, 812 |
| Cac8I | GCNNGC | 8 cut(s) | 193, 361, 484, 499, 590, 667, 1270, 1282 |
| CciI | TCATGA | 1 cut(s) | 750 |
| CfoI | GCGC | 2 cut(s) | 392, 671 |
| Cfr10I | RCCGGY | 1 cut(s) | 1771 |
| Cfr13I | GGNCC | 2 cut(s) | 82, 432 |
| Csp6I | GTAC | 2 cut(s) | 23, 256 |
| CviQI | GTAC | 2 cut(s) | 23, 256 |
| DdeI | CTNAG | 4 cut(s) | 916, 1135, 1262, 1515 |
| DpnI | GATC | 6 cut(s) | 248, 554, 879, 1160, 1239, 1347 |
| DpnII | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| Eam1104I | CTCTTC | 1 cut(s) | 1387 |
| EarI | CTCTTC | 1 cut(s) | 1387 |
| Ecl136II | GAGCTC | 1 cut(s) | 377 |
| Eco147I | AGGCCT | 1 cut(s) | 1029 |
| Eco24I | GRGCYC | 2 cut(s) | 379, 1174 |
| Eco47I | GGWCC | 2 cut(s) | 82, 432 |
| Eco53kI | GAGCTC | 1 cut(s) | 377 |
| Eco57I | CTGAAG | 2 cut(s) | 59, 1605 |
| EcoICRI | GAGCTC | 1 cut(s) | 377 |
| EcoRI | GAATTC | 1 cut(s) | 754 |
| EcoRII | CCWGG | 4 cut(s) | 84, 195, 214, 1142 |
| EcoT38I | GRGCYC | 2 cut(s) | 379, 1174 |
| Esp3I | CGTCTC | 1 cut(s) | 216 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 149, 181 |
| FaqI | GGGAC | 1 cut(s) | 874 |
| FauI | CCCGC | 1 cut(s) | 581 |
| FauNDI | CATATG | 1 cut(s) | 909 |
| FbaI | TGATCA | 1 cut(s) | 552 |
| Fnu4HI | GCNGC | 3 cut(s) | 952, 1512, 1581 |
| FokI | GGATG | 4 cut(s) | 30, 331, 506, 1454 |
| FriOI | GRGCYC | 2 cut(s) | 379, 1174 |
| Fsp4HI | GCNGC | 3 cut(s) | 952, 1512, 1581 |
| FspBI | CTAG | 5 cut(s) | 20, 882, 977, 1379, 1798 |
| GlaI | GCGC | 2 cut(s) | 391, 670 |
| GluI | GCNGC | 3 cut(s) | 952, 1512, 1581 |
| GsuI | CTGGAG | 2 cut(s) | 638, 1326 |
| HaeIII | GGCC | 2 cut(s) | 1029, 1284 |
| HapII | CCGG | 5 cut(s) | 252, 861, 1439, 1681, 1772 |
| HhaI | GCGC | 2 cut(s) | 392, 671 |
| Hin6I | GCGC | 2 cut(s) | 390, 669 |
| HinP1I | GCGC | 2 cut(s) | 390, 669 |
| HincII | GTYRAC | 2 cut(s) | 1291, 1533 |
| HindII | GTYRAC | 2 cut(s) | 1291, 1533 |
| HinfI | GANTC | 6 cut(s) | 634, 729, 734, 887, 1313, 1445 |
| HpaII | CCGG | 5 cut(s) | 252, 861, 1439, 1681, 1772 |
| HphI | GGTGA | 6 cut(s) | 85, 111, 263, 319, 587, 1007 |
| Hpy166II | GTNNAC | 5 cut(s) | 258, 543, 998, 1291, 1533 |
| Hpy188III | TCNNGA | 4 cut(s) | 751, 861, 1343, 1349 |
| Hpy8I | GTNNAC | 5 cut(s) | 258, 543, 998, 1291, 1533 |
| HpyAV | CCTTC | 4 cut(s) | 752, 914, 1289, 1580 |
| HpyCH4III | ACNGT | 1 cut(s) | 992 |
| HpyCH4IV | ACGT | 3 cut(s) | 225, 260, 1553 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 239, 248, 424, 662, 977, 1435, 1478 |
| HpyF3I | CTNAG | 4 cut(s) | 916, 1135, 1262, 1515 |
| HpySE526I | ACGT | 3 cut(s) | 225, 260, 1553 |
| HspAI | GCGC | 2 cut(s) | 390, 669 |
| Kpn2I | TCCGGA | 1 cut(s) | 860 |
| Ksp22I | TGATCA | 1 cut(s) | 552 |
| Kzo9I | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| LmnI | GCTCC | 3 cut(s) | 374, 1457, 1469 |
| Lsp1109I | GCAGC | 3 cut(s) | 963, 1498, 1592 |
| LweI | GCATC | 2 cut(s) | 484, 1551 |
| MaeI | CTAG | 5 cut(s) | 20, 882, 977, 1379, 1798 |
| MaeII | ACGT | 3 cut(s) | 225, 260, 1553 |
| MaeIII | GTNAC | 3 cut(s) | 159, 269, 1336 |
| MalI | GATC | 6 cut(s) | 248, 554, 879, 1160, 1239, 1347 |
| MboI | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| MboII | GAAGA | 2 cut(s) | 1404, 1630 |
| MfeI | CAATTG | 1 cut(s) | 675 |
| MflI | RGATCY | 1 cut(s) | 877 |
| MhlI | GDGCHC | 6 cut(s) | 8, 354, 379, 1174, 1462, 1782 |
| MluCI | AATT | 8 cut(s) | 113, 675, 754, 855, 934, 1014, 1039, 1416 |
| MlyI | GAGTC | 3 cut(s) | 743, 896, 1454 |
| MmeI | TCCRAC | 3 cut(s) | 628, 762, 1643 |
| MroI | TCCGGA | 1 cut(s) | 860 |
| MroXI | GAANNNNTTC | 2 cut(s) | 332, 1002 |
| MseI | TTAA | 6 cut(s) | 152, 179, 720, 854, 1113, 1434 |
| MslI | CAYNNNNRTG | 6 cut(s) | 76, 461, 573, 1179, 1556, 1785 |
| MspA1I | CMGCKG | 1 cut(s) | 1583 |
| MspI | CCGG | 5 cut(s) | 252, 861, 1439, 1681, 1772 |
| MspR9I | CCNGG | 6 cut(s) | 86, 197, 216, 253, 1144, 1682 |
| MunI | CAATTG | 1 cut(s) | 675 |
| Mva1269I | GAATGC | 3 cut(s) | 334, 429, 702 |
| MvaI | CCWGG | 4 cut(s) | 86, 197, 216, 1144 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 239, 248, 424, 662, 977, 1435, 1478 |
| NciI | CCSGG | 2 cut(s) | 253, 1682 |
| NdeI | CATATG | 1 cut(s) | 909 |
| NdeII | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| NlaIV | GGNNCC | 4 cut(s) | 83, 324, 433, 879 |
| NmuCI | GTSAC | 2 cut(s) | 159, 269 |
| NspI | RCATGY | 4 cut(s) | 466, 772, 969, 1072 |
| NspV | TTCGAA | 1 cut(s) | 1311 |
| OliI | CACNNNNGTG | 3 cut(s) | 76, 573, 1556 |
| PagI | TCATGA | 1 cut(s) | 750 |
| PceI | AGGCCT | 1 cut(s) | 1029 |
| PciI | ACATGT | 3 cut(s) | 462, 768, 1068 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 601 |
| PctI | GAATGC | 3 cut(s) | 334, 429, 702 |
| PdmI | GAANNNNTTC | 2 cut(s) | 332, 1002 |
| PfeI | GAWTC | 3 cut(s) | 634, 729, 1313 |
| PfoI | TCCNGGA | 2 cut(s) | 84, 1142 |
| PkrI | GCNGC | 3 cut(s) | 953, 1513, 1582 |
| PleI | GAGTC | 3 cut(s) | 742, 895, 1453 |
| PpsI | GAGTC | 3 cut(s) | 742, 895, 1453 |
| Ppu21I | YACGTR | 1 cut(s) | 1554 |
| PscI | ACATGT | 3 cut(s) | 462, 768, 1068 |
| Psp124BI | GAGCTC | 1 cut(s) | 379 |
| Psp6I | CCWGG | 4 cut(s) | 84, 195, 214, 1142 |
| PspGI | CCWGG | 4 cut(s) | 84, 195, 214, 1142 |
| PspN4I | GGNNCC | 4 cut(s) | 83, 324, 433, 879 |
| PspPI | GGNCC | 2 cut(s) | 82, 432 |
| PsuI | RGATCY | 1 cut(s) | 877 |
| PvuII | CAGCTG | 1 cut(s) | 1583 |
| RsaI | GTAC | 2 cut(s) | 24, 257 |
| RsaNI | GTAC | 2 cut(s) | 23, 256 |
| RseI | CAYNNNNRTG | 6 cut(s) | 76, 461, 573, 1179, 1556, 1785 |
| SacI | GAGCTC | 1 cut(s) | 379 |
| SaqAI | TTAA | 6 cut(s) | 152, 179, 720, 854, 1113, 1434 |
| SatI | GCNGC | 3 cut(s) | 952, 1512, 1581 |
| Sau3AI | GATC | 6 cut(s) | 246, 552, 877, 1158, 1237, 1345 |
| Sau96I | GGNCC | 2 cut(s) | 82, 432 |
| ScaI | AGTACT | 1 cut(s) | 24 |
| SchI | GAGTC | 3 cut(s) | 743, 896, 1454 |
| ScrFI | CCNGG | 6 cut(s) | 86, 197, 216, 253, 1144, 1682 |
| SduI | GDGCHC | 6 cut(s) | 8, 354, 379, 1174, 1462, 1782 |
| SfaNI | GCATC | 2 cut(s) | 484, 1551 |
| SfuI | TTCGAA | 1 cut(s) | 1311 |
| SinI | GGWCC | 2 cut(s) | 82, 432 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 76, 461, 573, 1179, 1556, 1785 |
| SmlI | CTYRAG | 2 cut(s) | 353, 1300 |
| SmoI | CTYRAG | 2 cut(s) | 353, 1300 |
| SpeI | ACTAGT | 1 cut(s) | 19 |
| Sse9I | AATT | 8 cut(s) | 113, 675, 754, 855, 934, 1014, 1039, 1416 |
| SseBI | AGGCCT | 1 cut(s) | 1029 |
| SsiI | CCGC | 3 cut(s) | 588, 656, 1083 |
| SspI | AATATT | 1 cut(s) | 1573 |
| SspMI | CTAG | 5 cut(s) | 20, 882, 977, 1379, 1798 |
| SstI | GAGCTC | 1 cut(s) | 379 |
| StuI | AGGCCT | 1 cut(s) | 1029 |
| StyD4I | CCNGG | 6 cut(s) | 84, 195, 214, 251, 1142, 1680 |
| TaaI | ACNGT | 1 cut(s) | 992 |
| TaiI | ACGT | 3 cut(s) | 228, 263, 1556 |
| TaqI | TCGA | 8 cut(s) | 204, 444, 510, 595, 650, 732, 1065, 1311 |
| TasI | AATT | 8 cut(s) | 113, 675, 754, 855, 934, 1014, 1039, 1416 |
| TatI | WGTACW | 1 cut(s) | 22 |
| TfiI | GAWTC | 3 cut(s) | 634, 729, 1313 |
| Tru1I | TTAA | 6 cut(s) | 152, 179, 720, 854, 1113, 1434 |
| Tru9I | TTAA | 6 cut(s) | 152, 179, 720, 854, 1113, 1434 |
| TscAI | CASTG | 5 cut(s) | 83, 352, 562, 720, 812 |
| TseFI | GTSAC | 2 cut(s) | 159, 269 |
| TseI | GCWGC | 3 cut(s) | 951, 1511, 1580 |
| Tsp45I | GTSAC | 2 cut(s) | 159, 269 |
| TspGWI | ACGGA | 3 cut(s) | 627, 741, 1672 |
| TspRI | CASTG | 5 cut(s) | 83, 352, 562, 720, 812 |
| VpaK11BI | GGWCC | 2 cut(s) | 82, 432 |
| XapI | RAATTY | 2 cut(s) | 754, 1039 |
| XceI | RCATGY | 4 cut(s) | 466, 772, 969, 1072 |
| XmnI | GAANNNNTTC | 2 cut(s) | 332, 1002 |
| XspI | CTAG | 5 cut(s) | 20, 882, 977, 1379, 1798 |
| ZrmI | AGTACT | 1 cut(s) | 24 |