pycom04g16900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
19464386 .. 19466293
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16900.2

Sequence Viewer

Length: 1800 bp
ATGAGCACAAAAAGACTACTAGTACTACCCATAACTCTTTTTCATCCCATACCACCCATAACCAGAAACTCACTTCAGTGGGTCCAGGACTTCACCACCCAATCAAGCCCACAATTTTCACCAAAAATCCCCAACATTTTAGCCACAAACTTAATCAAGTCACACTTTGACAAGGGCTTAATCAAAGAAGCACGCCAGGTGTTCGATGAAATGCCTGGGAGAGACGTGATAGCATGGACTGCTATGATCGCCGGGTACACGTCTTGCAGTCACCACAACCACGCATGGGCGATGTTTTGTGAGATGGTGAGGAATGGGATGGAACCGAATGCTTTCACTTTTTCCAGTGTGCTCAAGGCTTGCAAAGGCATGGGAGCTCTTTCGTGTGGCGCATTGGTTCATGGGTCGGCTGTGAAGCGTGGAATGCAAGGGTCCATCTATGTCGAAAATGCACTCATGGACATGTATGCTACTTGTTGTGCAAGCATGGAGGATGCGTGCGTTGTGTTCGATGATATTTGTGAAAAGAATGATGTGTCGTGGACTACTTTGATCACTGGCTTCACTCACAGAGGTGATGGATATGGCGGGCTTCGAGTTTTCCGACAAATGTTGCTGGAGGAAGCAGAGCTGAATCCGTTTAGCTTTTCGATTGCGGTTAGAGCTTGCGCTTCAATTGGCTCACATTCTTTTGGAATGCAGATACATTCAGCAGTGATTAAACACGGATTCGAGTCCAACCTTCCTGTCATGAATTCAATACTGGACATGTATTGCAGATTTGGTTGTTTATCAGAGGCAAATCAGTGCTTCCATGAAATAAGCGAAAGAGATTTGATTACATGGAACACCTTAATTTCCGGATATGAAAGATTGGATCCTAGAGAGTCCCTGCGTATATTTTCGCATATGAACTCAGAAGGCTTTAGTCCAAATTGCTTCACATACAGCAGCGTTATATCGGCATGTGCTAACCTAGCAGTTTTGAACTGTGGTGAACAAGTTCATGGAGGAATTATTCGGAGAGGCCTTGATAAGAATTTGGCGTTGGCTAATGCACTTATCGACATGTATGCCAAGTGCGGAAGCATATCAAACTCGCACAAAACTTTTAATGAAATGTCTGATAGAAACTTAGTCTCCTGGACTTCCATGATGATCGGATATGGGGCTCATGGATATGGAAAAGAGGCTGTTGAAATGTTTGATATGATGGTCAAATCAGGCATAAGACCCGATCAAATCGTGTTTATGGCAGTTCTGAGTGCTTGCAGTCATGCTGGCCTTGTTGACGAAGGCTTGAGATATTTCGAATCAATGATAAGTGATTACAAAGTTACTCCAGATCAGGACATTTATGGGTGTGTGGTGGATTTGCTAGGTCGTAGGGGAAGAGTTGAGGAGGCTTATGAACTAATTGAGAGTATGCCATTTAAGCCGGATGAGTCTGTTTGGGGAGCACTTCTCGGAGCTTGTAAAGCACACGAGCTTCCACATTTGCGAAAAGTGGCTGCTCAGAGGTTATTAGAGTTGACACCGAATATGGTTGGCACGTATGTGATGCTGTCAAATATTTATGCAGCTGAAGGCGAATGGGGGGAAGTCGCAAATACGAGGAAGATGATGAGAGGTATGGGGAACAAGAAAGAGGTAGGACGGAGTTGGATTGAGGTAAGAAACCGGGTTTATAGTTTTGTTGTGGGAGATAAGGTGGGTTCTCATATAAACTTGGTGTATGAGGTTTTGGAAGTTCTGATTTCGCATATAAAACCGGCAGAGCACATAAATGATTTAGACTAG

Protein Analysis

600

Amino Acids

66.68

Weight (kDa)

6.03

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014343)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 860
AciI CCGC 3 cut(s) 588, 656, 1083
AclWI GGATC 2 cut(s) 872, 885
AcsI RAATTY 2 cut(s) 754, 1039
AcuI CTGAAG 2 cut(s) 59, 1605
AfaI GTAC 2 cut(s) 24, 257
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 4 cut(s) 258, 462, 768, 1068
AgsI TTSAA 4 cut(s) 675, 759, 988, 1199
AhlI ACTAGT 1 cut(s) 19
AjiI CACGTC 2 cut(s) 226, 261
AjnI CCWGG 4 cut(s) 84, 195, 214, 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AleI CACNNNNGTG 3 cut(s) 76, 573, 1556
AluBI AGCT 7 cut(s) 377, 631, 645, 665, 1472, 1489, 1583
AluI AGCT 7 cut(s) 377, 631, 645, 665, 1472, 1489, 1583
Alw21I GWGCWC 5 cut(s) 8, 354, 379, 1462, 1782
Alw26I GTCTC 2 cut(s) 216, 1144
AlwI GGATC 2 cut(s) 872, 885
Aor13HI TCCGGA 1 cut(s) 860
AoxI GGCC 2 cut(s) 1027, 1282
ApeKI GCWGC 3 cut(s) 951, 1511, 1580
ApoI RAATTY 2 cut(s) 754, 1039
Asp700I GAANNNNTTC 2 cut(s) 332, 1002
AspLEI GCGC 2 cut(s) 392, 671
AspS9I GGNCC 2 cut(s) 82, 432
AsuC2I CCSGG 2 cut(s) 253, 1682
AsuHPI GGTGA 6 cut(s) 85, 111, 263, 319, 587, 1007
AsuII TTCGAA 1 cut(s) 1311
AvaII GGWCC 2 cut(s) 82, 432
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 2 cut(s) 379, 1174
BauI CACGAG 1 cut(s) 1484
Bbv12I GWGCWC 5 cut(s) 8, 354, 379, 1462, 1782
BbvI GCAGC 3 cut(s) 963, 1498, 1592
BccI CCATC 5 cut(s) 298, 313, 443, 572, 1207
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 4 cut(s) 86, 197, 216, 1144
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 2 cut(s) 253, 1682
BcoDI GTCTC 2 cut(s) 216, 1144
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 5 cut(s) 20, 882, 977, 1379, 1798
BisI GCNGC 3 cut(s) 952, 1512, 1581
BlsI GCNGC 3 cut(s) 953, 1513, 1582
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 6 cut(s) 86, 197, 216, 253, 1144, 1682
Bme18I GGWCC 2 cut(s) 82, 432
BmgBI CACGTC 2 cut(s) 226, 261
BmgT120I GGNCC 2 cut(s) 82, 432
BmiI GGNNCC 4 cut(s) 83, 324, 433, 879
BmrFI CCNGG 6 cut(s) 86, 197, 216, 253, 1144, 1682
BmsI GCATC 2 cut(s) 484, 1551
BplI GAGNNNNNCTC 2 cut(s) 1449, 1481
BpmI CTGGAG 2 cut(s) 638, 1326
Bpu14I TTCGAA 1 cut(s) 1311
BpuEI CTTGAG 2 cut(s) 338, 1321
BpuMI CCSGG 2 cut(s) 253, 1682
BsaAI YACGTR 1 cut(s) 1554
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 860
BsaXI ACNNNNNCTCC 6 cut(s) 482, 512, 1124, 1154, 1695, 1725
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 1771
Bse1I ACTGG 3 cut(s) 345, 562, 768
BseAI TCCGGA 1 cut(s) 860
BseBI CCWGG 4 cut(s) 86, 197, 216, 1144
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 4 cut(s) 43, 324, 499, 1447
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 3 cut(s) 930, 1253, 1529
BseNI ACTGG 3 cut(s) 345, 562, 768
BseRI GAGGAG 1 cut(s) 1415
BseXI GCAGC 3 cut(s) 963, 1498, 1592
BshFI GGCC 2 cut(s) 1029, 1284
BsiHKAI GWGCWC 5 cut(s) 8, 354, 379, 1462, 1782
BsiSI CCGG 5 cut(s) 252, 861, 1439, 1681, 1772
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 216, 1144
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 874
BsmI GAATGC 3 cut(s) 334, 429, 702
BsnI GGCC 2 cut(s) 1029, 1284
Bsp119I TTCGAA 1 cut(s) 1311
Bsp1286I GDGCHC 6 cut(s) 8, 354, 379, 1174, 1462, 1782
Bsp13I TCCGGA 1 cut(s) 860
Bsp143I GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
BspACI CCGC 3 cut(s) 588, 656, 1083
BspANI GGCC 2 cut(s) 1029, 1284
BspCNI CTCAG 3 cut(s) 929, 1254, 1528
BspEI TCCGGA 1 cut(s) 860
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 4 cut(s) 83, 324, 433, 879
BspPI GGATC 2 cut(s) 872, 885
BspT104I TTCGAA 1 cut(s) 1311
BsrFI RCCGGY 1 cut(s) 1771
BsrI ACTGG 3 cut(s) 345, 562, 768
BssAI RCCGGY 1 cut(s) 1771
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
BssSI CACGAG 1 cut(s) 1484
Bst2BI CACGAG 1 cut(s) 1484
Bst2UI CCWGG 4 cut(s) 86, 197, 216, 1144
Bst4CI ACNGT 1 cut(s) 992
Bst6I CTCTTC 1 cut(s) 1387
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 1554
BstBI TTCGAA 1 cut(s) 1311
BstC8I GCNNGC 8 cut(s) 193, 361, 484, 499, 590, 667, 1270, 1282
BstDEI CTNAG 4 cut(s) 916, 1135, 1262, 1515
BstF5I GGATG 4 cut(s) 43, 324, 499, 1447
BstHHI GCGC 2 cut(s) 392, 671
BstKTI GATC 6 cut(s) 249, 555, 880, 1161, 1240, 1348
BstMAI GTCTC 2 cut(s) 216, 1144
BstMBI GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
BstMWI GCNNNNNNNGC 7 cut(s) 239, 248, 424, 662, 977, 1435, 1478
BstNI CCWGG 4 cut(s) 86, 197, 216, 1144
BstNSI RCATGY 4 cut(s) 466, 772, 969, 1072
BstSCI CCNGG 6 cut(s) 84, 195, 214, 251, 1142, 1680
BstV1I GCAGC 3 cut(s) 963, 1498, 1592
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BsuRI GGCC 2 cut(s) 1029, 1284
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 2 cut(s) 226, 261
BtsCI GGATG 4 cut(s) 43, 324, 499, 1447
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 5 cut(s) 83, 352, 555, 720, 812
Cac8I GCNNGC 8 cut(s) 193, 361, 484, 499, 590, 667, 1270, 1282
CciI TCATGA 1 cut(s) 750
CfoI GCGC 2 cut(s) 392, 671
Cfr10I RCCGGY 1 cut(s) 1771
Cfr13I GGNCC 2 cut(s) 82, 432
Csp6I GTAC 2 cut(s) 23, 256
CviQI GTAC 2 cut(s) 23, 256
DdeI CTNAG 4 cut(s) 916, 1135, 1262, 1515
DpnI GATC 6 cut(s) 248, 554, 879, 1160, 1239, 1347
DpnII GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
Eam1104I CTCTTC 1 cut(s) 1387
EarI CTCTTC 1 cut(s) 1387
Ecl136II GAGCTC 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 1029
Eco24I GRGCYC 2 cut(s) 379, 1174
Eco47I GGWCC 2 cut(s) 82, 432
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 59, 1605
EcoICRI GAGCTC 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 4 cut(s) 84, 195, 214, 1142
EcoT38I GRGCYC 2 cut(s) 379, 1174
Esp3I CGTCTC 1 cut(s) 216
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 874
FauI CCCGC 1 cut(s) 581
FauNDI CATATG 1 cut(s) 909
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 952, 1512, 1581
FokI GGATG 4 cut(s) 30, 331, 506, 1454
FriOI GRGCYC 2 cut(s) 379, 1174
Fsp4HI GCNGC 3 cut(s) 952, 1512, 1581
FspBI CTAG 5 cut(s) 20, 882, 977, 1379, 1798
GlaI GCGC 2 cut(s) 391, 670
GluI GCNGC 3 cut(s) 952, 1512, 1581
GsuI CTGGAG 2 cut(s) 638, 1326
HaeIII GGCC 2 cut(s) 1029, 1284
HapII CCGG 5 cut(s) 252, 861, 1439, 1681, 1772
HhaI GCGC 2 cut(s) 392, 671
Hin6I GCGC 2 cut(s) 390, 669
HinP1I GCGC 2 cut(s) 390, 669
HincII GTYRAC 2 cut(s) 1291, 1533
HindII GTYRAC 2 cut(s) 1291, 1533
HinfI GANTC 6 cut(s) 634, 729, 734, 887, 1313, 1445
HpaII CCGG 5 cut(s) 252, 861, 1439, 1681, 1772
HphI GGTGA 6 cut(s) 85, 111, 263, 319, 587, 1007
Hpy166II GTNNAC 5 cut(s) 258, 543, 998, 1291, 1533
Hpy188III TCNNGA 4 cut(s) 751, 861, 1343, 1349
Hpy8I GTNNAC 5 cut(s) 258, 543, 998, 1291, 1533
HpyAV CCTTC 4 cut(s) 752, 914, 1289, 1580
HpyCH4III ACNGT 1 cut(s) 992
HpyCH4IV ACGT 3 cut(s) 225, 260, 1553
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 248, 424, 662, 977, 1435, 1478
HpyF3I CTNAG 4 cut(s) 916, 1135, 1262, 1515
HpySE526I ACGT 3 cut(s) 225, 260, 1553
HspAI GCGC 2 cut(s) 390, 669
Kpn2I TCCGGA 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
LmnI GCTCC 3 cut(s) 374, 1457, 1469
Lsp1109I GCAGC 3 cut(s) 963, 1498, 1592
LweI GCATC 2 cut(s) 484, 1551
MaeI CTAG 5 cut(s) 20, 882, 977, 1379, 1798
MaeII ACGT 3 cut(s) 225, 260, 1553
MaeIII GTNAC 3 cut(s) 159, 269, 1336
MalI GATC 6 cut(s) 248, 554, 879, 1160, 1239, 1347
MboI GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
MboII GAAGA 2 cut(s) 1404, 1630
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 6 cut(s) 8, 354, 379, 1174, 1462, 1782
MluCI AATT 8 cut(s) 113, 675, 754, 855, 934, 1014, 1039, 1416
MlyI GAGTC 3 cut(s) 743, 896, 1454
MmeI TCCRAC 3 cut(s) 628, 762, 1643
MroI TCCGGA 1 cut(s) 860
MroXI GAANNNNTTC 2 cut(s) 332, 1002
MseI TTAA 6 cut(s) 152, 179, 720, 854, 1113, 1434
MslI CAYNNNNRTG 6 cut(s) 76, 461, 573, 1179, 1556, 1785
MspA1I CMGCKG 1 cut(s) 1583
MspI CCGG 5 cut(s) 252, 861, 1439, 1681, 1772
MspR9I CCNGG 6 cut(s) 86, 197, 216, 253, 1144, 1682
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 3 cut(s) 334, 429, 702
MvaI CCWGG 4 cut(s) 86, 197, 216, 1144
MwoI GCNNNNNNNGC 7 cut(s) 239, 248, 424, 662, 977, 1435, 1478
NciI CCSGG 2 cut(s) 253, 1682
NdeI CATATG 1 cut(s) 909
NdeII GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
NlaIV GGNNCC 4 cut(s) 83, 324, 433, 879
NmuCI GTSAC 2 cut(s) 159, 269
NspI RCATGY 4 cut(s) 466, 772, 969, 1072
NspV TTCGAA 1 cut(s) 1311
OliI CACNNNNGTG 3 cut(s) 76, 573, 1556
PagI TCATGA 1 cut(s) 750
PceI AGGCCT 1 cut(s) 1029
PciI ACATGT 3 cut(s) 462, 768, 1068
PcsI WCGNNNNNNNCGW 1 cut(s) 601
PctI GAATGC 3 cut(s) 334, 429, 702
PdmI GAANNNNTTC 2 cut(s) 332, 1002
PfeI GAWTC 3 cut(s) 634, 729, 1313
PfoI TCCNGGA 2 cut(s) 84, 1142
PkrI GCNGC 3 cut(s) 953, 1513, 1582
PleI GAGTC 3 cut(s) 742, 895, 1453
PpsI GAGTC 3 cut(s) 742, 895, 1453
Ppu21I YACGTR 1 cut(s) 1554
PscI ACATGT 3 cut(s) 462, 768, 1068
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 4 cut(s) 84, 195, 214, 1142
PspGI CCWGG 4 cut(s) 84, 195, 214, 1142
PspN4I GGNNCC 4 cut(s) 83, 324, 433, 879
PspPI GGNCC 2 cut(s) 82, 432
PsuI RGATCY 1 cut(s) 877
PvuII CAGCTG 1 cut(s) 1583
RsaI GTAC 2 cut(s) 24, 257
RsaNI GTAC 2 cut(s) 23, 256
RseI CAYNNNNRTG 6 cut(s) 76, 461, 573, 1179, 1556, 1785
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 6 cut(s) 152, 179, 720, 854, 1113, 1434
SatI GCNGC 3 cut(s) 952, 1512, 1581
Sau3AI GATC 6 cut(s) 246, 552, 877, 1158, 1237, 1345
Sau96I GGNCC 2 cut(s) 82, 432
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 3 cut(s) 743, 896, 1454
ScrFI CCNGG 6 cut(s) 86, 197, 216, 253, 1144, 1682
SduI GDGCHC 6 cut(s) 8, 354, 379, 1174, 1462, 1782
SfaNI GCATC 2 cut(s) 484, 1551
SfuI TTCGAA 1 cut(s) 1311
SinI GGWCC 2 cut(s) 82, 432
SmiMI CAYNNNNRTG 6 cut(s) 76, 461, 573, 1179, 1556, 1785
SmlI CTYRAG 2 cut(s) 353, 1300
SmoI CTYRAG 2 cut(s) 353, 1300
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 8 cut(s) 113, 675, 754, 855, 934, 1014, 1039, 1416
SseBI AGGCCT 1 cut(s) 1029
SsiI CCGC 3 cut(s) 588, 656, 1083
SspI AATATT 1 cut(s) 1573
SspMI CTAG 5 cut(s) 20, 882, 977, 1379, 1798
SstI GAGCTC 1 cut(s) 379
StuI AGGCCT 1 cut(s) 1029
StyD4I CCNGG 6 cut(s) 84, 195, 214, 251, 1142, 1680
TaaI ACNGT 1 cut(s) 992
TaiI ACGT 3 cut(s) 228, 263, 1556
TaqI TCGA 8 cut(s) 204, 444, 510, 595, 650, 732, 1065, 1311
TasI AATT 8 cut(s) 113, 675, 754, 855, 934, 1014, 1039, 1416
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 3 cut(s) 634, 729, 1313
Tru1I TTAA 6 cut(s) 152, 179, 720, 854, 1113, 1434
Tru9I TTAA 6 cut(s) 152, 179, 720, 854, 1113, 1434
TscAI CASTG 5 cut(s) 83, 352, 562, 720, 812
TseFI GTSAC 2 cut(s) 159, 269
TseI GCWGC 3 cut(s) 951, 1511, 1580
Tsp45I GTSAC 2 cut(s) 159, 269
TspGWI ACGGA 3 cut(s) 627, 741, 1672
TspRI CASTG 5 cut(s) 83, 352, 562, 720, 812
VpaK11BI GGWCC 2 cut(s) 82, 432
XapI RAATTY 2 cut(s) 754, 1039
XceI RCATGY 4 cut(s) 466, 772, 969, 1072
XmnI GAANNNNTTC 2 cut(s) 332, 1002
XspI CTAG 5 cut(s) 20, 882, 977, 1379, 1798
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.