FvH4_6g07860

PPR repeat family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
4690788 .. 4693194
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07860.t1

Sequence Viewer

Length: 1827 bp
ATGACCTCAAGAAAACTACTACCCAGAACCCACTTCAACCCAATACCAACCATCATCAGAAACTCACTCCATTGCTCCCAAGAACAACCCACCACCCAATCAAACCCACCTTTTTTCTCAAAGGGCCCCAACCTCTTAGCCACAGACTTAATCAAGTCCTACTTCCAAAAGGGCTCCCTCAAAGAAGCACGCAAGGTGTTCGATGAAATGTCTGAGAGAGATGTTGTTACTTGGACTGCCATGATTGCTGGCTACACTTCTTGCAGTCACCACAGCAGCGCTTGGGGTGTGTTCTGTGAGATGTTTAGGAGCGATATGGAGCCGAATGCGTTTACTTTTTCGAGTGTGCTCAAGGCTTGTAAGGGGATGGTTTCTCTTTTGTGTGGTGCATTGGTTCATGGCTCGACGGTTAAGTATGGAATGAAGGGGTCTATCTATGTTGAGAATGCGCTTATGGACATGTATGGTGCTTGTTGTGTTAGTATGGACGATGCGTGCAAGGTGTTCAGTGAGCTTCATGAGAAGAATGCTGTGAGTTGGACTAGTTTGATCACTGGATACACTCACAGAGGTGATGGCTATGGCGGGCTTCAAGTTTTTCGCCAAATGTTGCTGGAGGGAGTGGAACCGAACCCATTTAGCTTTTCAATTGCGGTTAAAGCGTGCGCTTCAGTTGGCTCGCAAACTTTTGGCAGGCAATTACATTCAGCAGTAATCAAGTATGCGTTTGATTCCCATCTTCCAGTCATGAATTCCATACTGGACATGTACTGCAAGTTTTGTTGTTTACCAGAGGCAAAGCAGTACTTTGATGAAATGAGTCAAAAAGATCTGATTACCTGGAACACCTTGATTTCCGGATATGAAAAATCGGATCCTAGAGAGTCCCTAAGTATATTTTCTCGTATGGAGTCAGAAGGATTTAGTCCGAATAGCTTCACATTAACCAGCGTTACAGCGGCCTGTGCTAACATGGCAGCATTGAACTGTGGTGAACAAGTTCATGGTACAATCATCCGTAGAGGCTTTAATAAGAACTTGGCATTGGCTAATACACTTATTGACATGTATGCCAAGTGTGGGAGCATCACTGACGCGCACAAAATATTTAGTGACATGTCTGATAGAAATTTAGTCTCCTGGACTTCCATGATGCTTGGATATGGGGATCATGGGCATGGAAAAGAAGCTGTTGAGTTGTTTGATGAGATGGTAATGTCAGGTATTAGGCCAGATCGAATAGTGTTTATGGCAGTTCTGAGTGCGTGCAGCCATACTGGACTTGTCACTGAAGGCTTGAGGTATTTCAAATGTATGGTAAATGATTACAAGGTTACTCCAGATAAGGACATATATAGTTGCGTGGTGGATTTACTGTGCCGTGCTGGTAGAATCAAGGAAGCTTATGAGTTAATAGAGAGCATGCCATTTAAGCCTGACGAGTCTTTTTGGGGTGCACTGCTTGGAGCTTGCAGAGCACATAAGCTTCCCCATTTGAGCAGACTAGCTGCCCAGAGGTTAATAGATTTGAGGCCAAACATGGCGGGAACATATGTGATGCTGTCAAATTTTTATGCCGCTGAAGGTAAATGGGGAGAATACGCCAATATGAGAATGTTGATGAGAGGAACAGGGAATAAGAAAGAGGCAGGACAGAGTTGGATTGAGGTAAGAAATCAGGTTTATAGTTTTGTTGTAGGAGATAAGATGGGTTCTCATATAAAGTGGGTGTATGGAGTTTTGGAATTTCTGATTTGGCATATGAAAGAGGCCGAATACTTAACTGATTTGGATTGCTCTATACATGACCAAGATGATGGAACCTGA

Protein Analysis

609

Amino Acids

68.05

Weight (kDa)

6.45

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 73 - 120 1.4e-12 PPR repeat family
PPR_2 PF13041 175 - 223 9.4e-09 PPR repeat family
PPR_2 PF13041 277 - 324 1.9e-07 PPR repeat family
PPR_2 PF13041 377 - 424 2.8e-09 PPR repeat family
PPR PF01535 379 - 409 1.1e-07 PPR repeat
PPR_1 PF12854 445 - 475 5.1e-07 PPR repeat
E_motif PF20431 499 - 556 2.7e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014343)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1097
AccIII TCCGGA 1 cut(s) 857
AciI CCGC 5 cut(s) 585, 653, 959, 1544, 1578
AclWI GGATC 3 cut(s) 869, 882, 1176
AcsI RAATTY 4 cut(s) 751, 1129, 1567, 1745
AcuI CTGAAG 3 cut(s) 654, 1311, 1602
AfaI GTAC 3 cut(s) 770, 806, 1009
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 1080
AflIII ACRYGT 4 cut(s) 459, 765, 1065, 1116
AgsI TTSAA 5 cut(s) 37, 593, 648, 985, 1309
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 2 cut(s) 839, 1139
AjuI GAANNNNNNNTTGG 2 cut(s) 1028, 1060
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 8 cut(s) 514, 642, 936, 1190, 1403, 1469, 1486, 1508
AluI AGCT 8 cut(s) 514, 642, 936, 1190, 1403, 1469, 1486, 1508
Alw21I GWGCWC 3 cut(s) 351, 1459, 1480
Alw26I GTCTC 1 cut(s) 1141
Alw44I GTGCAC 1 cut(s) 1455
AlwI GGATC 3 cut(s) 869, 882, 1176
Aor13HI TCCGGA 1 cut(s) 857
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 5 cut(s) 124, 960, 1229, 1532, 1770
ApaI GGGCCC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 1455
ApeKI GCWGC 4 cut(s) 276, 977, 1269, 1508
ApoI RAATTY 4 cut(s) 751, 1129, 1567, 1745
Asp700I GAANNNNTTC 2 cut(s) 935, 999
AspLEI GCGC 4 cut(s) 281, 451, 668, 1099
AspS9I GGNCC 2 cut(s) 124, 125
AsuHPI GGTGA 3 cut(s) 260, 584, 1004
BaeGI GKGCMC 2 cut(s) 128, 1459
BamHI GGATCC 1 cut(s) 874
BanII GRGCYC 2 cut(s) 128, 176
Bbv12I GWGCWC 3 cut(s) 351, 1459, 1480
BbvI GCAGC 4 cut(s) 288, 989, 1281, 1495
BccI CCATC 7 cut(s) 59, 361, 569, 744, 1204, 1702, 1811
BceAI ACGGC 1 cut(s) 1365
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 2 cut(s) 841, 1141
BciVI GTATCC 1 cut(s) 551
BclI TGATCA 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 1141
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 3 cut(s) 543, 879, 1505
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 551
BglII AGATCT 1 cut(s) 829
BisI GCNGC 6 cut(s) 277, 960, 978, 1270, 1509, 1578
BlsI GCNGC 6 cut(s) 278, 961, 979, 1271, 1510, 1579
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 2 cut(s) 841, 1141
BmgT120I GGNCC 2 cut(s) 124, 125
BmiI GGNNCC 7 cut(s) 126, 127, 175, 321, 627, 876, 1822
BmrFI CCNGG 2 cut(s) 841, 1141
BmsI GCATC 4 cut(s) 481, 1095, 1143, 1548
BpmI CTGGAG 2 cut(s) 635, 1323
BpuEI CTTGAG 2 cut(s) 335, 1318
BsaBI GATNNNNATC 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 857
Bsc4I CCNNNNNNNGG 1 cut(s) 1080
Bse1I ACTGG 4 cut(s) 559, 743, 765, 1282
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 857
BseBI CCWGG 2 cut(s) 841, 1141
BseGI GGATG 2 cut(s) 372, 1014
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 1 cut(s) 1080
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 204, 1250
BseNI ACTGG 4 cut(s) 559, 743, 765, 1282
BseSI GKGCMC 2 cut(s) 128, 1459
BseXI GCAGC 4 cut(s) 288, 989, 1281, 1495
BsgI GTGCAG 1 cut(s) 1288
Bsh1236I CGCG 1 cut(s) 1097
BshFI GGCC 5 cut(s) 126, 962, 1231, 1534, 1772
BsiHKAI GWGCWC 3 cut(s) 351, 1459, 1480
BsiSI CCGG 1 cut(s) 858
BslFI GGGAC 1 cut(s) 871
BslI CCNNNNNNNGG 1 cut(s) 1080
BsmAI GTCTC 1 cut(s) 1141
BsmFI GGGAC 1 cut(s) 871
BsmI GAATGC 3 cut(s) 331, 451, 532
BsnI GGCC 5 cut(s) 126, 962, 1231, 1534, 1772
Bsp120I GGGCCC 1 cut(s) 124
Bsp1286I GDGCHC 5 cut(s) 128, 176, 351, 1459, 1480
Bsp13I TCCGGA 1 cut(s) 857
Bsp143I GATC 5 cut(s) 549, 829, 874, 1168, 1234
BspACI CCGC 5 cut(s) 585, 653, 959, 1544, 1578
BspANI GGCC 5 cut(s) 126, 962, 1231, 1534, 1772
BspCNI CTCAG 2 cut(s) 205, 1251
BspEI TCCGGA 1 cut(s) 857
BspFNI CGCG 1 cut(s) 1097
BspHI TCATGA 2 cut(s) 517, 747
BspLI GGNNCC 7 cut(s) 126, 127, 175, 321, 627, 876, 1822
BspPI GGATC 3 cut(s) 869, 882, 1176
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 4 cut(s) 559, 743, 765, 1282
BssMI GATC 5 cut(s) 549, 829, 874, 1168, 1234
Bst2UI CCWGG 2 cut(s) 841, 1141
Bst4CI ACNGT 3 cut(s) 409, 989, 1377
BstDEI CTNAG 4 cut(s) 136, 213, 890, 1259
BstF5I GGATG 2 cut(s) 372, 1014
BstFNI CGCG 1 cut(s) 1097
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 4 cut(s) 281, 451, 668, 1099
BstKTI GATC 5 cut(s) 552, 832, 877, 1171, 1237
BstMAI GTCTC 1 cut(s) 1141
BstMBI GATC 5 cut(s) 549, 829, 874, 1168, 1234
BstMWI GCNNNNNNNGC 6 cut(s) 245, 659, 965, 974, 1432, 1475
BstNI CCWGG 2 cut(s) 841, 1141
BstNSI RCATGY 5 cut(s) 463, 769, 1069, 1120, 1426
BstSCI CCNGG 2 cut(s) 839, 1139
BstSLI GKGCMC 2 cut(s) 128, 1459
BstUI CGCG 1 cut(s) 1097
BstV1I GCAGC 4 cut(s) 288, 989, 1281, 1495
BstX2I RGATCY 2 cut(s) 829, 874
BstXI CCANNNNNNTGG 1 cut(s) 1817
BstYI RGATCY 2 cut(s) 829, 874
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 5 cut(s) 126, 962, 1231, 1534, 1772
BtsCI GGATG 2 cut(s) 372, 1014
BtsI GCAGTG 1 cut(s) 1457
BtsIMutI CAGTG 5 cut(s) 514, 552, 1089, 1287, 1457
CciI TCATGA 2 cut(s) 517, 747
CfoI GCGC 4 cut(s) 281, 451, 668, 1099
Cfr13I GGNCC 2 cut(s) 124, 125
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 3 cut(s) 769, 805, 1008
CviQI GTAC 3 cut(s) 769, 805, 1008
DdeI CTNAG 4 cut(s) 136, 213, 890, 1259
DpnI GATC 5 cut(s) 551, 831, 876, 1170, 1236
DpnII GATC 5 cut(s) 549, 829, 874, 1168, 1234
Eco24I GRGCYC 2 cut(s) 128, 176
Eco47III AGCGCT 1 cut(s) 280
Eco57I CTGAAG 3 cut(s) 654, 1311, 1602
EcoO109I RGGNCCY 2 cut(s) 124, 125
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 839, 1139
EcoT38I GRGCYC 2 cut(s) 128, 176
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 791, 823
FaqI GGGAC 1 cut(s) 871
FauI CCCGC 2 cut(s) 578, 1537
FauNDI CATATG 2 cut(s) 1552, 1761
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 6 cut(s) 277, 960, 978, 1270, 1509, 1578
FokI GGATG 2 cut(s) 379, 1001
FriOI GRGCYC 2 cut(s) 128, 176
Fsp4HI GCNGC 6 cut(s) 277, 960, 978, 1270, 1509, 1578
FspBI CTAG 3 cut(s) 543, 879, 1505
GlaI GCGC 4 cut(s) 280, 450, 667, 1098
GluI GCNGC 6 cut(s) 277, 960, 978, 1270, 1509, 1578
GsuI CTGGAG 2 cut(s) 635, 1323
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 5 cut(s) 126, 962, 1231, 1534, 1772
HapII CCGG 1 cut(s) 858
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 4 cut(s) 281, 451, 668, 1099
Hin6I GCGC 4 cut(s) 279, 449, 666, 1097
HinP1I GCGC 4 cut(s) 279, 449, 666, 1097
HindIII AAGCTT 2 cut(s) 1401, 1484
HinfI GANTC 6 cut(s) 731, 820, 884, 911, 1392, 1442
HpaII CCGG 1 cut(s) 858
HphI GGTGA 3 cut(s) 260, 584, 1004
Hpy166II GTNNAC 4 cut(s) 333, 788, 995, 1457
Hpy188I TCNGA 9 cut(s) 59, 214, 834, 874, 916, 930, 1123, 1260, 1752
Hpy188III TCNNGA 5 cut(s) 9, 518, 748, 858, 1340
Hpy8I GTNNAC 4 cut(s) 333, 788, 995, 1457
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 418, 911, 1286, 1577
HpyCH4III ACNGT 3 cut(s) 409, 989, 1377
HpyCH4V TGCA 7 cut(s) 264, 389, 498, 774, 1269, 1457, 1473
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 659, 965, 974, 1432, 1475
HpyF3I CTNAG 4 cut(s) 136, 213, 890, 1259
HspAI GCGC 4 cut(s) 279, 449, 666, 1097
Kpn2I TCCGGA 1 cut(s) 857
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 5 cut(s) 549, 829, 874, 1168, 1234
LmnI GCTCC 6 cut(s) 80, 179, 309, 319, 1083, 1466
Lsp1109I GCAGC 4 cut(s) 288, 989, 1281, 1495
LweI GCATC 4 cut(s) 481, 1095, 1143, 1548
MaeI CTAG 3 cut(s) 543, 879, 1505
MaeIII GTNAC 6 cut(s) 226, 266, 952, 1112, 1285, 1333
MalI GATC 5 cut(s) 551, 831, 876, 1170, 1236
MboI GATC 5 cut(s) 549, 829, 874, 1168, 1234
MboII GAAGA 2 cut(s) 535, 731
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 2 cut(s) 829, 874
MhlI GDGCHC 5 cut(s) 128, 176, 351, 1459, 1480
MluCI AATT 6 cut(s) 648, 698, 751, 1129, 1567, 1745
MlyI GAGTC 4 cut(s) 829, 893, 920, 1451
MmeI TCCRAC 2 cut(s) 518, 1640
MroI TCCGGA 1 cut(s) 857
MroXI GAANNNNTTC 2 cut(s) 935, 999
MseI TTAA 9 cut(s) 149, 411, 657, 944, 1029, 1412, 1431, 1520, 1781
MslI CAYNNNNRTG 2 cut(s) 570, 1176
MspA1I CMGCKG 2 cut(s) 959, 1580
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 2 cut(s) 841, 1141
MunI CAATTG 1 cut(s) 648
Mva1269I GAATGC 3 cut(s) 331, 451, 532
MvaI CCWGG 2 cut(s) 841, 1141
MvnI CGCG 1 cut(s) 1097
MwoI GCNNNNNNNGC 6 cut(s) 245, 659, 965, 974, 1432, 1475
NdeI CATATG 2 cut(s) 1552, 1761
NdeII GATC 5 cut(s) 549, 829, 874, 1168, 1234
NlaIV GGNNCC 7 cut(s) 126, 127, 175, 321, 627, 876, 1822
NmuCI GTSAC 3 cut(s) 266, 1112, 1285
NspI RCATGY 5 cut(s) 463, 769, 1069, 1120, 1426
OliI CACNNNNGTG 1 cut(s) 570
PaeI GCATGC 1 cut(s) 1426
PagI TCATGA 2 cut(s) 517, 747
PciI ACATGT 4 cut(s) 459, 765, 1065, 1116
PctI GAATGC 3 cut(s) 331, 451, 532
PdmI GAANNNNTTC 2 cut(s) 935, 999
PfeI GAWTC 2 cut(s) 731, 1392
PfoI TCCNGGA 1 cut(s) 1139
PkrI GCNGC 6 cut(s) 278, 961, 979, 1271, 1510, 1579
PleI GAGTC 4 cut(s) 828, 892, 919, 1450
PpsI GAGTC 4 cut(s) 828, 892, 919, 1450
PscI ACATGT 4 cut(s) 459, 765, 1065, 1116
Psp6I CCWGG 2 cut(s) 839, 1139
PspGI CCWGG 2 cut(s) 839, 1139
PspN4I GGNNCC 7 cut(s) 126, 127, 175, 321, 627, 876, 1822
PspOMI GGGCCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 124, 125
PsuI RGATCY 2 cut(s) 829, 874
RsaI GTAC 3 cut(s) 770, 806, 1009
RsaNI GTAC 3 cut(s) 769, 805, 1008
RseI CAYNNNNRTG 2 cut(s) 570, 1176
SaqAI TTAA 9 cut(s) 149, 411, 657, 944, 1029, 1412, 1431, 1520, 1781
SatI GCNGC 6 cut(s) 277, 960, 978, 1270, 1509, 1578
Sau3AI GATC 5 cut(s) 549, 829, 874, 1168, 1234
Sau96I GGNCC 2 cut(s) 124, 125
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 4 cut(s) 829, 893, 920, 1451
ScrFI CCNGG 2 cut(s) 841, 1141
SduI GDGCHC 5 cut(s) 128, 176, 351, 1459, 1480
SfaNI GCATC 4 cut(s) 481, 1095, 1143, 1548
SmiMI CAYNNNNRTG 2 cut(s) 570, 1176
SmlI CTYRAG 3 cut(s) 7, 350, 1297
SmoI CTYRAG 3 cut(s) 7, 350, 1297
SpeI ACTAGT 1 cut(s) 542
SphI GCATGC 1 cut(s) 1426
Sse9I AATT 6 cut(s) 648, 698, 751, 1129, 1567, 1745
SsiI CCGC 5 cut(s) 585, 653, 959, 1544, 1578
SspI AATATT 1 cut(s) 1107
SspMI CTAG 3 cut(s) 543, 879, 1505
StyD4I CCNGG 2 cut(s) 839, 1139
TaaI ACNGT 3 cut(s) 409, 989, 1377
TaqI TCGA 4 cut(s) 201, 341, 404, 1237
TasI AATT 6 cut(s) 648, 698, 751, 1129, 1567, 1745
TatI WGTACW 2 cut(s) 768, 804
TauI GCSGC 2 cut(s) 962, 1580
TfiI GAWTC 2 cut(s) 731, 1392
Tru1I TTAA 9 cut(s) 149, 411, 657, 944, 1029, 1412, 1431, 1520, 1781
Tru9I TTAA 9 cut(s) 149, 411, 657, 944, 1029, 1412, 1431, 1520, 1781
TscAI CASTG 5 cut(s) 514, 559, 1096, 1294, 1464
TseFI GTSAC 3 cut(s) 266, 1112, 1285
TseI GCWGC 4 cut(s) 276, 977, 1269, 1508
Tsp45I GTSAC 3 cut(s) 266, 1112, 1285
TspDTI ATGAA 9 cut(s) 219, 386, 437, 506, 764, 828, 879, 992, 1778
TspGWI ACGGA 1 cut(s) 1007
TspRI CASTG 5 cut(s) 514, 559, 1096, 1294, 1464
VneI GTGCAC 1 cut(s) 1455
XapI RAATTY 4 cut(s) 751, 1129, 1567, 1745
XceI RCATGY 5 cut(s) 463, 769, 1069, 1120, 1426
XmnI GAANNNNTTC 2 cut(s) 935, 999
XspI CTAG 3 cut(s) 543, 879, 1505
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.