AT1G56700

Pyroglutamyl peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005844
Physical Location & Seq
Forward (+)
21256025 .. 21257973
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56700.4

Sequence Viewer

Length: 660 bp
ATGGGTTCTGAAGGACCAACGGGTGTGACGATTCATATCACAGGGTTCAAGAAGTTCCATGGAGTAGCTGAGAATCCTACAGAGAAAATGGCTAACAATTTGAAAGAATATTTGGCTAAGAATTGTGTTTCGAAAGATGTGAATCTTGGAAGTTGTACTGTGCTTGAGACTGCTGGTCAAGGAGCTCTTGCTTCTCTCTATCAGTTGCTACAATCCGCGGTTAACACAAAAGAGTCAGAGTCGTTGACCGGAAAAACCATATGGGTTCACTTTGGAGTTAATAGTGGCGCTACAAAATTTGCAATTGAGCAACAAGCTGTGAATGAAGCGACTTTTCGTTGTCCTGATGAATTGGGTTGGAAACCTCAGAATTTGCCAATTGTTCCCTCTGATGGTCCAATCTCAACTGTAAGAAAGACTAATCTTCCTGTTGAAGAGATAACAAAGGCGTTGGAGAAGAATGGCTTTGAAGTGATAACATCAGATGATGCAGGTCGATTTGTGTGTAACTATGTCTATTACCATTCTCTGAGATTTGCAGAGCAGAATAAGACCAGATCACTCTTTGTTCACGTTCCTCTTTTCGTTGCCGTGGATGAAGAAACCCAAATGAGATTCACTGTTTCTCTGCTGGAGGTACTCGCTTCTATTTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C15

Protein Analysis

219

Amino Acids

24.05

Weight (kDa)

5.98

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C15 PF01470 11 - 195 7.2e-19 Pyroglutamyl peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 482
AccII CGCG 1 cut(s) 218
AciI CCGC 2 cut(s) 216, 218
AcsI RAATTY 2 cut(s) 296, 370
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 157, 639
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 4 cut(s) 49, 103, 434, 470
AhdI GACNNNNNGTC 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 68, 185, 317
AluI AGCT 3 cut(s) 68, 185, 317
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 296, 370
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 14, 395
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 2 cut(s) 14, 395
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 187
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 14, 395
BmeRI GACNNNNNGTC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 14, 395
BmsI GCATC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 653
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 185
BsaBI GATNNNNATC 2 cut(s) 35, 141
BsaJI CCNNGG 3 cut(s) 58, 216, 591
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse8I GATNNNNATC 2 cut(s) 35, 141
BseDI CCNNGG 3 cut(s) 58, 216, 591
BseGI GGATG 1 cut(s) 601
BseJI GATNNNNATC 2 cut(s) 35, 141
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 3 cut(s) 60, 380, 521
Bsh1236I CGCG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 557
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 2 cut(s) 216, 218
BspCNI CTCAG 3 cut(s) 61, 379, 522
BspFNI CGCG 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 58, 216, 591
BssMI GATC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 160, 409, 622
Bst6I CTCTTC 1 cut(s) 429
BstBI TTCGAA 1 cut(s) 131
BstDEI CTNAG 4 cut(s) 69, 117, 366, 530
BstDSI CCRYGG 3 cut(s) 58, 216, 591
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 1 cut(s) 560
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 218
BtgI CCRYGG 3 cut(s) 58, 216, 591
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 618
BveI ACCTGC 1 cut(s) 482
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 14, 395
Cfr42I CCGCGG 1 cut(s) 219
Csp6I GTAC 2 cut(s) 156, 638
CviAII CATG 1 cut(s) 59
CviJI RGCY 6 cut(s) 68, 92, 116, 185, 317, 465
CviKI_1 RGCY 6 cut(s) 68, 92, 116, 185, 317, 465
CviQI GTAC 2 cut(s) 156, 638
DdeI CTNAG 4 cut(s) 69, 117, 366, 530
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
DriI GACNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 429
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 14, 395
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 62
FaiI YATR 5 cut(s) 36, 60, 260, 262, 513
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 449, 481
FatI CATG 1 cut(s) 58
FauNDI CATATG 1 cut(s) 260
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 1 cut(s) 187
GlaI GCGC 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 1 cut(s) 291
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 2 cut(s) 223, 246
HindII GTYRAC 2 cut(s) 223, 246
HinfI GANTC 6 cut(s) 31, 73, 142, 233, 239, 615
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 4 cut(s) 223, 246, 268, 571
Hpy188I TCNGA 6 cut(s) 10, 238, 369, 391, 484, 531
Hpy188III TCNNGA 2 cut(s) 49, 344
Hpy8I GTNNAC 4 cut(s) 223, 246, 268, 571
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 3 cut(s) 160, 409, 622
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 4 cut(s) 302, 491, 539, 654
HpyF3I CTNAG 4 cut(s) 69, 117, 366, 530
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 1 cut(s) 288
KspAI GTTAAC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 557
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 27, 159, 262, 357, 441, 477, 568, 617
LweI GCATC 1 cut(s) 478
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 25, 506
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 4 cut(s) 416, 446, 469, 611
MfeI CAATTG 2 cut(s) 303, 378
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 7 cut(s) 97, 121, 296, 303, 350, 370, 378
MlyI GAGTC 2 cut(s) 242, 248
MmeI TCCRAC 2 cut(s) 338, 432
MnlI CCTC 4 cut(s) 375, 397, 588, 628
MseI TTAA 2 cut(s) 222, 279
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 249
MunI CAATTG 2 cut(s) 303, 378
MvnI CGCG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 58
NdeI CATATG 1 cut(s) 260
NdeII GATC 1 cut(s) 557
NlaIII CATG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 25
NspV TTCGAA 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 4 cut(s) 31, 73, 142, 615
PleI GAGTC 2 cut(s) 241, 247
PpsI GAGTC 2 cut(s) 241, 247
Psp124BI GAGCTC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 14, 395
RsaI GTAC 2 cut(s) 157, 639
RsaNI GTAC 2 cut(s) 156, 638
SacI GAGCTC 1 cut(s) 187
SacII CCGCGG 1 cut(s) 219
SaqAI TTAA 2 cut(s) 222, 279
Sau3AI GATC 1 cut(s) 557
Sau96I GGNCC 2 cut(s) 14, 395
SchI GAGTC 2 cut(s) 242, 248
SduI GDGCHC 1 cut(s) 187
SetI ASST 7 cut(s) 70, 187, 319, 367, 496, 576, 639
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 78
Sfr303I CCGCGG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 131
SgrBI CCGCGG 1 cut(s) 219
SinI GGWCC 2 cut(s) 14, 395
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 7 cut(s) 97, 121, 296, 303, 350, 370, 378
SsiI CCGC 2 cut(s) 216, 218
SspI AATATT 1 cut(s) 110
SstI GAGCTC 1 cut(s) 187
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 3 cut(s) 160, 409, 622
TaiI ACGT 1 cut(s) 576
TaqI TCGA 2 cut(s) 131, 496
TasI AATT 7 cut(s) 97, 121, 296, 303, 350, 370, 378
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 4 cut(s) 31, 73, 142, 615
Tru1I TTAA 2 cut(s) 222, 279
Tru9I TTAA 2 cut(s) 222, 279
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 4 cut(s) 23, 339, 363, 612
TspRI CASTG 1 cut(s) 625
VpaK11BI GGWCC 2 cut(s) 14, 395
XapI RAATTY 2 cut(s) 296, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.