Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005844

Physical Location & Seq

Genomic Coordinates Reverse (-)

20931493 .. 20933027

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGGTCTGAAGGGCCTTCACCAGTAACTATTCATGTGACCGGTTTTAAGAAATTCCACGGGGTTTCAGAGAATCCAACTGAGACAATTGTCAGTAATCTCACAGAGTATGTGAAGAAGAAGGGTTCACCAAAAGGTCTGGTTCTTGGAAGTTGCAGCATTCTTGAGACTGCAGGACAAGGAGCACTTGCTGACCTGTGCCAGACGTTGCGATCTGCTATTGGTGAGCAGGATACTTCAAATTCCAGCAGAACTATTTGGATACACTTTGGTGTTAATAGTGGTGCAACAAAGTTTGTTCTCGAGCGACAAGCCTTCAATGAAGCTACTTTCCGTTACCCTGATGAAATGGGATGGAAGCCTCAGAAAGTTCCGATTATTCCTTCAGATGGTGGAGTTGAACATGTGCGAGAGACTTCTCTTCCCCTCGAGGACGTAACAAAGGCCTTGGCAAAGAAGGGTTATGAGGTGGTGATCTCAGATGATGCAGGCCGGTTTGTGTGCAATTACGTCTACTACCATTCCCTTCGGTTTGCAGAGCAAAACGGGACCAAATCACTTTTTGTTCATGTGCCTCGCTTCTCGACCATAGACGAGGAGACCCAAATGAAGTTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCATCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C15

Protein Analysis

218

Amino Acids

23.8

Weight (kDa)

6.08

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56700 AT1G56700 AT1G56700 AT1G56700
fragaria_vesca	FvH4_6g08120 FvH4_6g08120 FvH4_6g08120 FvH4_6g08120 FvH4_6g08120
malus_domestica	MD04G1189700.v1.1 MD12G1202400.v1.1
prunus_persica	Prupe.6G307500_v2.0.a1 Prupe.6G307500_v2.0.a1 Prupe.6G307500_v2.0.a1
pyrus_communis	pycom04g16810 pycom12g18900
rosa_chinensis	RchiOBHm_Chr3g0457971
rosa_laevigata	RLG00000025182
rosa_multiflora	Rmu_sc0000384.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421420
rosa_rugosa	Rorug03G0023800 Rorug03G0023900
rosa_samantha	Rh3AG084500 Rh3BG087200 Rh3CG087700 Rh3DG088000
rosa_wichuraiana	Rw0G012370 Rw3G007190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	513
AcsI	RAATTY	2 cut(s)	53, 241
AcuI	CTGAAG	2 cut(s)	30, 369
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	240, 319, 401
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	4 cut(s)	77, 161, 407, 593
Ama87I	CYCGRG	2 cut(s)	302, 428
AoxI	GGCC	3 cut(s)	14, 444, 490
ApeKI	GCWGC	2 cut(s)	156, 617
ApoI	RAATTY	2 cut(s)	53, 241
AsiGI	ACCGGT	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	14, 549
AsuHPI	GGTGA	4 cut(s)	12, 120, 236, 484
AvaI	CYCGRG	2 cut(s)	302, 428
AvaII	GGWCC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	168, 604
BccI	CCATC	2 cut(s)	348, 383
BciVI	GTATCC	2 cut(s)	226, 255
BcoDI	GTCTC	4 cut(s)	77, 161, 407, 593
BfaI	CTAG	2 cut(s)	629, 652
BfmI	CTRYAG	1 cut(s)	171
BfuI	GTATCC	2 cut(s)	226, 255
BisI	GCNGC	2 cut(s)	157, 618
BlsI	GCNGC	2 cut(s)	158, 619
Bme18I	GGWCC	1 cut(s)	549
BmeT110I	CYCGRG	2 cut(s)	302, 428
BmgT120I	GGNCC	2 cut(s)	14, 549
BmiI	GGNNCC	1 cut(s)	550
BmsI	GCATC	1 cut(s)	475
BoxI	GACNNNNGTC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	58, 447
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	2 cut(s)	41, 492
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	58, 447
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	72, 377, 492
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	168, 604
BshFI	GGCC	3 cut(s)	16, 446, 492
BshTI	ACCGGT	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	302, 428
BsiSI	CCGG	2 cut(s)	42, 493
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	4 cut(s)	77, 161, 407, 593
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	16, 446, 492
Bso31I	GGTCTC	1 cut(s)	593
BsoBI	CYCGRG	2 cut(s)	302, 428
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	212, 474
BspANI	GGCC	3 cut(s)	16, 446, 492
BspCNI	CTCAG	3 cut(s)	73, 376, 491
BspLI	GGNNCC	1 cut(s)	550
BspMAI	CTGCAG	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	593
BsrFI	RCCGGY	2 cut(s)	41, 492
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	2 cut(s)	41, 492
BssECI	CCNNGG	2 cut(s)	58, 447
BssMI	GATC	2 cut(s)	212, 474
BssT1I	CCWWGG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	81, 363, 478
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	2 cut(s)	215, 477
BstMAI	GTCTC	4 cut(s)	77, 161, 407, 593
BstMBI	GATC	2 cut(s)	212, 474
BstNSI	RCATGY	1 cut(s)	407
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	168, 604
BsuI	GTATCC	2 cut(s)	226, 255
BsuRI	GGCC	3 cut(s)	16, 446, 492
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	490
Cfr10I	RCCGGY	2 cut(s)	41, 492
Cfr13I	GGNCC	2 cut(s)	14, 549
Csp6I	GTAC	1 cut(s)	635
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	3 cut(s)	35, 404, 569
CviJI	RGCY	6 cut(s)	16, 314, 326, 361, 446, 492
CviKI_1	RGCY	6 cut(s)	16, 314, 326, 361, 446, 492
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	3 cut(s)	81, 363, 478
DpnI	GATC	2 cut(s)	214, 476
DpnII	GATC	2 cut(s)	212, 474
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	446
Eco31I	GGTCTC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	549
Eco57I	CTGAAG	2 cut(s)	30, 369
Eco88I	CYCGRG	2 cut(s)	302, 428
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	38, 407, 572
FaiI	YATR	7 cut(s)	36, 111, 405, 465, 570, 590, 649
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	34, 403, 568
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	157, 618
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	157, 618
FspBI	CTAG	2 cut(s)	629, 652
GluI	GCNGC	2 cut(s)	157, 618
HaeIII	GGCC	3 cut(s)	16, 446, 492
HapII	CCGG	2 cut(s)	42, 493
Hin1II	CATG	3 cut(s)	38, 407, 572
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	42, 493
HphI	GGTGA	4 cut(s)	12, 120, 236, 484
Hpy166II	GTNNAC	2 cut(s)	128, 514
Hpy188I	TCNGA	6 cut(s)	10, 70, 366, 375, 388, 481
Hpy188III	TCNNGA	3 cut(s)	164, 302, 583
Hpy8I	GTNNAC	2 cut(s)	128, 514
HpyAV	CCTTC	7 cut(s)	5, 27, 115, 325, 393, 451, 536
HpyCH4IV	ACGT	3 cut(s)	206, 435, 510
HpyCH4V	TGCA	6 cut(s)	156, 173, 287, 488, 504, 536
HpyF3I	CTNAG	3 cut(s)	81, 363, 478
HpySE526I	ACGT	3 cut(s)	206, 435, 510
Hsp92II	CATG	3 cut(s)	38, 407, 572
Kzo9I	GATC	2 cut(s)	212, 474
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	168, 604
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	2 cut(s)	629, 652
MaeII	ACGT	3 cut(s)	206, 435, 510
MaeIII	GTNAC	4 cut(s)	25, 37, 335, 436
MalI	GATC	2 cut(s)	214, 476
MboI	GATC	2 cut(s)	212, 474
MboII	GAAGA	3 cut(s)	127, 130, 413
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	4 cut(s)	53, 87, 241, 505
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	372, 424, 437, 460, 585, 589, 625
MseI	TTAA	2 cut(s)	48, 276
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	42, 493
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	159
NdeII	GATC	2 cut(s)	212, 474
NlaIII	CATG	3 cut(s)	38, 407, 572
NlaIV	GGNNCC	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	270
PaeR7I	CTCGAG	2 cut(s)	302, 428
PceI	AGGCCT	1 cut(s)	446
PciI	ACATGT	1 cut(s)	403
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	158, 619
PscI	ACATGT	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	14, 549
PspXI	VCTCGAGB	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	48, 276
SatI	GCNGC	2 cut(s)	157, 618
Sau3AI	GATC	2 cut(s)	212, 474
Sau96I	GGNCC	2 cut(s)	14, 549
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	139, 198, 209, 328, 438, 471, 513, 636
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	2 cut(s)	302, 428
SinI	GGWCC	1 cut(s)	549
SlaI	CTCGAG	2 cut(s)	302, 428
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	3 cut(s)	164, 302, 428
SmoI	CTYRAG	3 cut(s)	164, 302, 428
Sse9I	AATT	4 cut(s)	53, 87, 241, 505
SseBI	AGGCCT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	629, 652
StuI	AGGCCT	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	447
TaiI	ACGT	3 cut(s)	209, 438, 513
TaqI	TCGA	3 cut(s)	303, 429, 584
TasI	AATT	4 cut(s)	53, 87, 241, 505
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	48, 276
Tru9I	TTAA	2 cut(s)	48, 276
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	156, 617
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	6 cut(s)	23, 336, 360, 557, 623, 633
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	549
XapI	RAATTY	2 cut(s)	53, 241
XceI	RCATGY	1 cut(s)	407
XhoI	CTCGAG	2 cut(s)	302, 428
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	2 cut(s)	629, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.