Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005844

Physical Location & Seq

Genomic Coordinates Reverse (-)

1886663 .. 1888708

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCTCAAGAGAAGGAAATGAGCAGGGTGACTGAGTGGAGAATAAGAATGGCAGATGGTTCATCTGAAGCTTTGGCTCCAGAAGCAGGGCTTGCCTGCCGAGCTTGGCTTGCTCTGAAGGGTCTGATTATGGGGTTGGTTTTGAAAGTGTGCAATTTCTTCAGGAAAGCTTGGGATTTGGGACGAAATGAGCCTAAAAAAGTGATTCATTGTTTGAAAGTAGGTATGGCACTCACTGTTGTTTCACTGTTTTACTACATGAGACCTTTGTACGAAGGTATGGGAGGAAATGCTATGTGGGCAGTTATTACTGTTGTGGTTGTCTTTGAAAACACAGTGGGTGCAACAATATGTAAAAGTTTAAACAGAATTTGCGGAACTTTTGTGGCTGGCTCTCTTGCCATTGGCATCCATTGGATAGTGAGTCAATCAGGAAAAGAATTCGAGCCTTTCATCAATGGGATTTCAGTATTTTTGTTAGCTTCTGCAGTTACCTTCTCAAAATTTATACCATCGGTGAAAAAGCGATTTGATTATGGTGCAATGATCTTCGTCCTCACATTCAGTTTAGTTACACTGTCGGGTTACCGGGTGGATAAATTATTGGAAATGGCCAACGATAGAGCTAGTTGTGTTGGAGAGTATTTCAATGATAGCGGAAGCTCTTCTGATGGTGACAAGGAATCTGATAAGAAATTGCTTGGCTACAAATGTGTTTTAACCTCAAAAGCAACAGAAGAAACCATGGCTAATTTTGCAAGATGGGAGCCTGCACATGGCCGCTTCAACTCCAGACATCTATGGAAACAATACCTCAAAATCGGCGCATCAATGCGTGCTTGTGCTTATTGCATTGACGCCCTTGATGGTTGTGTGAATTCCGAAAATGAGGTTCCTGAGTTGATAAAGAAGCATATGAGCAACATTGCTTTGAAAGTAAGCTCTGAGTCTTCAAGAGTCATAAAAGAGCTTGCAAGGACTATGAAGACAATGAAGAAATCATCTACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTACTTTATTTATTAATCCGCAGCCACTACAGGGAGCTGACTGTCCTGAAAAAAGGAACCCAGGAGCAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAGCTTCTTTACTGATTGAGATTGCTACAAGGATTGAAGGCATGGTTAATGCAGTTGAAGAACTAGCTGAGATGGGTGAGTACAAGTCTGTTGCAGATGAGAAGAATCAAAACCAGCCTGTTAGTAGAACTAATGTTCCTGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C15

Protein Analysis

441

Amino Acids

48.74

Weight (kDa)

7.91

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	58 - 212	5.4e-69	Aluminium activated malate transporter
FUSC_2	PF13515	90 - 212	2.9e-09	Fusaric acid resistance protein-like
ALMT	PF11744	211 - 367	2e-42	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56700 AT1G56700 AT1G56700 AT1G56700
fragaria_vesca	FvH4_6g08120 FvH4_6g08120 FvH4_6g08120 FvH4_6g08120 FvH4_6g08120
malus_domestica	MD04G1189700.v1.1 MD12G1202400.v1.1
prunus_persica	Prupe.6G307500_v2.0.a1 Prupe.6G307500_v2.0.a1 Prupe.6G307500_v2.0.a1
pyrus_communis	pycom04g16810 pycom12g18900
rosa_chinensis	RchiOBHm_Chr3g0457971
rosa_laevigata	RLG00000025182
rosa_multiflora	Rmu_sc0000384.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421420
rosa_rugosa	Rorug03G0023800 Rorug03G0023900
rosa_samantha	Rh3AG084500 Rh3BG087200 Rh3CG087700 Rh3DG088000
rosa_wichuraiana	Rw0G012370 Rw3G007190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	375, 657, 781, 1094
AcoI	YGGCCR	2 cut(s)	612, 778
AcsI	RAATTY	4 cut(s)	369, 440, 503, 877
AcuI	CTGAAG	3 cut(s)	87, 137, 145
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	2 cut(s)	272, 1259
AfiI	CCNNNNNNNGG	3 cut(s)	86, 776, 1106
AgsI	TTSAA	9 cut(s)	145, 217, 329, 649, 787, 934, 954, 1214, 1235
AjnI	CCWGG	1 cut(s)	1135
AloI	GAACNNNNNNTCC	1 cut(s)	1297
Alw21I	GWGCWC	1 cut(s)	1053
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	2 cut(s)	612, 778
ApeKI	GCWGC	1 cut(s)	1096
ApoI	RAATTY	4 cut(s)	369, 440, 503, 877
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	827
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	4 cut(s)	40, 529, 686, 1265
BalI	TGGCCA	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	1053
BbsI	GAAGAC	2 cut(s)	942, 992
Bbv12I	GWGCWC	1 cut(s)	1053
BbvI	GCAGC	1 cut(s)	1108
BccI	CCATC	6 cut(s)	50, 520, 665, 756, 860, 1243
BciT130I	CCWGG	1 cut(s)	1137
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	627, 1241
BfmI	CTRYAG	4 cut(s)	486, 1008, 1103, 1317
BisI	GCNGC	2 cut(s)	781, 1097
BlsI	GCNGC	2 cut(s)	782, 1098
Bme1390I	CCNGG	2 cut(s)	590, 1137
BmiI	GGNNCC	4 cut(s)	78, 768, 894, 1133
BmrFI	CCNGG	2 cut(s)	590, 1137
BmsI	GCATC	2 cut(s)	417, 836
BpiI	GAAGAC	2 cut(s)	942, 992
BpmI	CTGGAG	2 cut(s)	63, 775
BpuMI	CCSGG	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	744, 1135
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 776, 1106
Bse3DI	GCAATG	2 cut(s)	549, 924
BseBI	CCWGG	1 cut(s)	1137
BseDI	CCNNGG	2 cut(s)	744, 1135
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	86, 776, 1106
BseMI	GCAATG	2 cut(s)	549, 924
BseMII	CTCAG	4 cut(s)	24, 888, 936, 1236
BseXI	GCAGC	1 cut(s)	1108
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	2 cut(s)	614, 780
BsiHKAI	GWGCWC	1 cut(s)	1053
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	86, 776, 1106
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	614, 780
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	1053
Bsp143I	GATC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	4 cut(s)	375, 657, 781, 1094
BspANI	GGCC	2 cut(s)	614, 780
BspCNI	CTCAG	4 cut(s)	25, 889, 937, 1237
BspLI	GGNNCC	4 cut(s)	78, 768, 894, 1133
BspMAI	CTGCAG	2 cut(s)	490, 1321
BspQI	GCTCTTC	1 cut(s)	670
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	549, 924
BssECI	CCNNGG	2 cut(s)	744, 1135
BssMI	GATC	1 cut(s)	546
BssNI	GRCGYC	1 cut(s)	858
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	1137
Bst4CI	ACNGT	6 cut(s)	238, 249, 313, 337, 579, 1118
Bst6I	CTCTTC	2 cut(s)	670, 1077
BstACI	GRCGYC	1 cut(s)	858
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 771, 837, 972
BstDEI	CTNAG	4 cut(s)	33, 897, 945, 1245
BstDSI	CCRYGG	1 cut(s)	744
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 755
BstNI	CCWGG	1 cut(s)	1137
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	588, 1135
BstSFI	CTRYAG	4 cut(s)	486, 1008, 1103, 1317
BstV1I	GCAGC	1 cut(s)	1108
BstV2I	GAAGAC	2 cut(s)	942, 992
BsuRI	GGCC	2 cut(s)	614, 780
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	234, 245, 342, 575
Cac8I	GCNNGC	7 cut(s)	93, 97, 111, 391, 771, 837, 972
CfoI	GCGC	1 cut(s)	827
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	271, 1258
CviAII	CATG	6 cut(s)	259, 745, 776, 1153, 1162, 1219
CviQI	GTAC	2 cut(s)	271, 1258
DdeI	CTNAG	4 cut(s)	33, 897, 945, 1245
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	612, 778
Eam1104I	CTCTTC	2 cut(s)	670, 1077
EarI	CTCTTC	2 cut(s)	670, 1077
Ecl136II	GAGCTC	1 cut(s)	1051
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	1053
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	1159
Eco53kI	GAGCTC	1 cut(s)	1051
Eco57I	CTGAAG	3 cut(s)	87, 137, 145
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	1051
EcoO65I	GGTNACC	1 cut(s)	584
EcoRI	GAATTC	2 cut(s)	440, 877
EcoRII	CCWGG	1 cut(s)	1135
EcoRV	GATATC	1 cut(s)	1159
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	1053
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	6 cut(s)	262, 748, 779, 1156, 1165, 1222
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	6 cut(s)	258, 744, 775, 1152, 1161, 1218
FauNDI	CATATG	1 cut(s)	915
Fnu4HI	GCNGC	2 cut(s)	781, 1097
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	1053
Fsp4HI	GCNGC	2 cut(s)	781, 1097
FspBI	CTAG	2 cut(s)	627, 1241
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	2 cut(s)	781, 1097
GsuI	CTGGAG	2 cut(s)	63, 775
HaeIII	GGCC	2 cut(s)	614, 780
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	1 cut(s)	827
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	6 cut(s)	262, 748, 779, 1156, 1165, 1222
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HindIII	AAGCTT	2 cut(s)	69, 168
HinfI	GANTC	6 cut(s)	205, 424, 683, 947, 957, 1282
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	4 cut(s)	40, 529, 686, 1265
Hpy188I	TCNGA	7 cut(s)	67, 117, 126, 670, 688, 883, 946
Hpy188III	TCNNGA	8 cut(s)	8, 80, 163, 432, 792, 896, 954, 1121
HpyAV	CCTTC	5 cut(s)	7, 112, 269, 505, 1208
HpyCH4III	ACNGT	6 cut(s)	238, 249, 313, 337, 579, 1118
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 755
HpyF3I	CTNAG	4 cut(s)	33, 897, 945, 1245
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	6 cut(s)	262, 748, 779, 1156, 1165, 1222
HspAI	GCGC	1 cut(s)	825
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	670
LmnI	GCTCC	6 cut(s)	82, 766, 1048, 1056, 1109, 1139
Lsp1109I	GCAGC	1 cut(s)	1108
LweI	GCATC	2 cut(s)	417, 836
MaeI	CTAG	2 cut(s)	627, 1241
MaeIII	GTNAC	6 cut(s)	28, 490, 571, 584, 674, 1171
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	1053
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	8 cut(s)	154, 369, 440, 503, 599, 695, 751, 877
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	3 cut(s)	433, 956, 966
MmeI	TCCRAC	2 cut(s)	616, 1003
MnlI	CCTC	6 cut(s)	278, 566, 733, 824, 883, 1051
Mox20I	TGGCCA	1 cut(s)	614
MroXI	GAANNNNTTC	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	5 cut(s)	362, 719, 1064, 1089, 1224
Msp20I	TGGCCA	1 cut(s)	614
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	590, 1137
MssI	GTTTAAAC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	1137
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 101, 110, 299, 755
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	6 cut(s)	262, 748, 779, 1156, 1165, 1222
NlaIV	GGNNCC	4 cut(s)	78, 768, 894, 1133
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	28, 674, 1171
PciSI	GCTCTTC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	205, 683, 1282
PkrI	GCNGC	2 cut(s)	782, 1098
PleI	GAGTC	3 cut(s)	432, 955, 965
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	3 cut(s)	432, 955, 965
PshBI	ATTAAT	1 cut(s)	1089
Psp124BI	GAGCTC	1 cut(s)	1053
Psp6I	CCWGG	1 cut(s)	1135
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	1135
PspN4I	GGNNCC	4 cut(s)	78, 768, 894, 1133
PstI	CTGCAG	2 cut(s)	490, 1321
RsaI	GTAC	2 cut(s)	272, 1259
RsaNI	GTAC	2 cut(s)	271, 1258
SacI	GAGCTC	1 cut(s)	1053
SapI	GCTCTTC	1 cut(s)	670
SaqAI	TTAA	5 cut(s)	362, 719, 1064, 1089, 1224
SatI	GCNGC	2 cut(s)	781, 1097
Sau3AI	GATC	1 cut(s)	546
SchI	GAGTC	3 cut(s)	433, 956, 966
ScrFI	CCNGG	2 cut(s)	590, 1137
SduI	GDGCHC	1 cut(s)	1053
SfaNI	GCATC	2 cut(s)	417, 836
SfcI	CTRYAG	4 cut(s)	486, 1008, 1103, 1317
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	8 cut(s)	154, 369, 440, 503, 599, 695, 751, 877
SsiI	CCGC	4 cut(s)	375, 657, 781, 1094
SspMI	CTAG	2 cut(s)	627, 1241
SstI	GAGCTC	1 cut(s)	1053
StyD4I	CCNGG	2 cut(s)	588, 1135
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	6 cut(s)	238, 249, 313, 337, 579, 1118
TaqI	TCGA	1 cut(s)	444
TasI	AATT	8 cut(s)	154, 369, 440, 503, 599, 695, 751, 877
TatI	WGTACW	1 cut(s)	1257
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	3 cut(s)	205, 683, 1282
Tru1I	TTAA	5 cut(s)	362, 719, 1064, 1089, 1224
Tru9I	TTAA	5 cut(s)	362, 719, 1064, 1089, 1224
TscAI	CASTG	4 cut(s)	241, 252, 342, 582
TseFI	GTSAC	3 cut(s)	28, 674, 1171
TseI	GCWGC	1 cut(s)	1096
Tsp45I	GTSAC	3 cut(s)	28, 674, 1171
TspDTI	ATGAA	6 cut(s)	51, 197, 442, 998, 1007, 1046
TspRI	CASTG	4 cut(s)	241, 252, 342, 582
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	4 cut(s)	369, 440, 503, 877
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	2 cut(s)	627, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.