Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000384.1

Orthogroup ID

OG0005844

Physical Location & Seq

Genomic Coordinates Forward (+)

13000 .. 14404

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000384.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgggttccgaaggtcctgcaacaataacaattcatgtgacgggttttaagaaattccatggagtttcagagaatccaactgagacaattgtcagtaatctcaccaattatgtgaagaagaatggttcaccaaaaggtctggttattggaagttgcagcattcttgagactgcaggacaaggagcacttcttcccctataccagacattgcgatctgcaataagtgagaaggactctacaaattccagcagaattatttgggtacactttggagttaatagtggtgcaactaagtttgccattgagcatcaagctgtcaatgaagctacttttcgttgccctgatgagatgggatggaagcctcagaaagtccctatcattccttcggatggtggaatttcatatataagagagacttccctaccagttgaggagataaccaaggccttggcaaagaagggttatgaggtgatgacctcagatgatgcagggcgctttgtatgcaattatgtctactatcattcccttcggtttgcagagcaaaatgggatcaaatcgctctttgtgcacgtgcctctcttcttgactatagatgaggacacccaaatgaaatttgctgcatccttgctagaggtacttacatcatcgtgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C15

Protein Analysis

217

Amino Acids

23.72

Weight (kDa)

6.3

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56700 AT1G56700 AT1G56700 AT1G56700
fragaria_vesca	FvH4_6g08120 FvH4_6g08120 FvH4_6g08120 FvH4_6g08120 FvH4_6g08120
malus_domestica	MD04G1189700.v1.1 MD12G1202400.v1.1
prunus_persica	Prupe.6G307500_v2.0.a1 Prupe.6G307500_v2.0.a1 Prupe.6G307500_v2.0.a1
pyrus_communis	pycom04g16810 pycom12g18900
rosa_chinensis	RchiOBHm_Chr3g0457971
rosa_laevigata	RLG00000025182
rosa_multiflora	Rmu_sc0000384.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421420
rosa_rugosa	Rorug03G0023800 Rorug03G0023900
rosa_samantha	Rh3AG084500 Rh3BG087200 Rh3CG087700 Rh3DG088000
rosa_wichuraiana	Rw0G012370 Rw3G007190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	4 cut(s)	53, 241, 396, 611
AcvI	CACGTG	1 cut(s)	571
AfaI	GTAC	2 cut(s)	264, 636
AfiI	CCNNNNNNNGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	314, 326
AluI	AGCT	2 cut(s)	314, 326
Alw21I	GWGCWC	2 cut(s)	187, 570
Alw26I	GTCTC	3 cut(s)	77, 161, 407
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	2 cut(s)	156, 617
ApoI	RAATTY	4 cut(s)	53, 241, 396, 611
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	94, 120, 481
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	570
BbrPI	CACGTG	1 cut(s)	571
Bbv12I	GWGCWC	2 cut(s)	187, 570
BbvI	GCAGC	2 cut(s)	168, 604
BccI	CCATC	3 cut(s)	343, 348, 383
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	77, 161, 407
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	2 cut(s)	171, 588
BfoI	RGCGCY	1 cut(s)	496
BisI	GCNGC	2 cut(s)	157, 618
BlsI	GCNGC	2 cut(s)	158, 619
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	3 cut(s)	316, 475, 629
BoxI	GACNNNNGTC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	571
BsaJI	CCNNGG	3 cut(s)	58, 441, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	58, 441, 447
BseGI	GGATG	3 cut(s)	359, 394, 620
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	72, 377, 492
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	168, 604
BshFI	GGCC	1 cut(s)	446
BsiHKAI	GWGCWC	2 cut(s)	187, 570
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	77, 161, 407
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	187, 570
Bsp143I	GATC	2 cut(s)	212, 549
Bsp19I	CCATGG	1 cut(s)	58
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	3 cut(s)	73, 376, 491
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	58, 441, 447
BssMI	GATC	2 cut(s)	212, 549
BssT1I	CCWWGG	3 cut(s)	58, 441, 447
Bst6I	CTCTTC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	571
BstDEI	CTNAG	4 cut(s)	81, 291, 363, 478
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	359, 394, 620
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	215, 552
BstMAI	GTCTC	3 cut(s)	77, 161, 407
BstMBI	GATC	2 cut(s)	212, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 565
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	171, 588
BstSLI	GKGCMC	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	168, 604
BstXI	CCANNNNNNTGG	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	359, 394, 620
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	263, 635
CviAII	CATG	2 cut(s)	35, 59
CviJI	RGCY	4 cut(s)	314, 326, 361, 446
CviKI_1	RGCY	4 cut(s)	314, 326, 361, 446
CviQI	GTAC	2 cut(s)	263, 635
DdeI	CTNAG	4 cut(s)	81, 291, 363, 478
DpnI	GATC	2 cut(s)	214, 551
DpnII	GATC	2 cut(s)	212, 549
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	3 cut(s)	58, 441, 447
Eco147I	AGGCCT	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	14
Eco72I	CACGTG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	3 cut(s)	58, 441, 447
ErhI	CCWWGG	3 cut(s)	58, 441, 447
FaeI	CATG	2 cut(s)	38, 62
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 400, 432
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	34, 58
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	157, 618
FokI	GGATG	3 cut(s)	366, 401, 607
Fsp4HI	GCNGC	2 cut(s)	157, 618
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	157, 618
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	38, 62
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	73, 233
HphI	GGTGA	3 cut(s)	94, 120, 481
Hpy166II	GTNNAC	4 cut(s)	128, 265, 514, 568
Hpy188I	TCNGA	5 cut(s)	10, 70, 366, 388, 481
Hpy188III	TCNNGA	2 cut(s)	164, 583
Hpy8I	GTNNAC	4 cut(s)	128, 265, 514, 568
HpyAV	CCTTC	5 cut(s)	5, 223, 393, 451, 536
HpyCH4IV	ACGT	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 565
HpyF3I	CTNAG	4 cut(s)	81, 291, 363, 478
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	2 cut(s)	38, 62
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	212, 549
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	8 cut(s)	30, 125, 159, 215, 259, 354, 438, 474
Lsp1109I	GCAGC	2 cut(s)	168, 604
LweI	GCATC	3 cut(s)	316, 475, 629
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	214, 551
MboI	GATC	2 cut(s)	212, 549
MboII	GAAGA	4 cut(s)	127, 130, 182, 571
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	187, 570
MluCI	AATT	9 cut(s)	30, 53, 87, 106, 241, 252, 396, 505, 611
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	372, 424, 460, 487, 585, 589, 625
MseI	TTAA	2 cut(s)	48, 276
MslI	CAYNNNNRTG	2 cut(s)	605, 646
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	501, 565
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	212, 549
NlaIII	CATG	2 cut(s)	38, 62
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	446
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	158, 619
PleI	GAGTC	1 cut(s)	227
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	264, 636
RsaNI	GTAC	2 cut(s)	263, 635
RseI	CAYNNNNRTG	2 cut(s)	605, 646
SaqAI	TTAA	2 cut(s)	48, 276
SatI	GCNGC	2 cut(s)	157, 618
Sau3AI	GATC	2 cut(s)	212, 549
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	187, 570
SetI	ASST	8 cut(s)	16, 139, 316, 328, 471, 479, 573, 636
SfaNI	GCATC	3 cut(s)	316, 475, 629
SfcI	CTRYAG	2 cut(s)	171, 588
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	605, 646
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	9 cut(s)	30, 53, 87, 106, 241, 252, 396, 505, 611
SseBI	AGGCCT	1 cut(s)	446
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	58, 441, 447
TaiI	ACGT	1 cut(s)	573
TasI	AATT	9 cut(s)	30, 53, 87, 106, 241, 252, 396, 505, 611
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	48, 276
Tru9I	TTAA	2 cut(s)	48, 276
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	156, 617
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	23, 336, 390, 623
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	4 cut(s)	53, 241, 396, 611
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.