AT1G59650

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008071
Physical Location & Seq
Forward (+)
21919745 .. 21923013
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59650.1

Sequence Viewer

Length: 1479 bp
ATGGGAGGTTGCGTGTCAACGCCTAAGAGCTGTGTAGGAGGTAAAATAAGGTCAAGCAAAAGGAGAAAGACTCGGACAAGACGAAAGATTCAGAAGAAGAGAGTTGTTTCTTCTTCTCGCTTATCTGACGGATCTTTCGATAATAATCCCACTTTCAGAGCAAGTGTTGATGAAGCATGGTTTGATTCCAATCTCGCCTTTGAAACCGATTGTGATGATGACTTTCATAGTGTTCAGGAAGATACGTTGTCAGTGAACGGATGTGAGCGTATCTCAGTATCGAGTATGTCATCTGTTAAAGACTCTAACCTTGGTGGTTCCGCTCGGAATTCTCTAAGCGATGTCATCTCACAATCAAAATCAGAGAGTGCTTTGATTGACACTAAGCAGGCTGTTTTCATCGACGAGATATCTTCAAATGCTGATGGTAGCTCTAATAAAGATGAAGGGTTGTTGGAAAACTGCGGGATTCTTCCGAGTAATTGTTTGCCTTGTCTTAATTCAACTGTTCCTTCTATTGAAAAGAGAAGGTCTTTAAGCTCTAGCCCTCCAAGTACGAGGAAAAAAGCTGCGGTTAAACTATCTTTCAAGTGGAGAGAAGGGCACCCTACTGGTCCTTTATTTTCTACAACAATGCAGTTGCAGAGACCGATGGCAGGTTCTCAGGTTCCGTTTTGTCCACTCGAAAAGAAAATGTTTGATTCTTGGTCAATTATTGAGCCTGGTAGTTTCCGGGTTCGTAGCAAAACTTATTTCAGAGATAAGAAGAAAGAGCTTGCACCAAACTATGCTGCATATAATCCATTTGGTGTCGATGTATTTTTATCTCAACGTAAAGTAAACCATATAGCGCAATACGTGGAGCTTCCTGTTGTTACTACCACCCCGACTAAGCTCCCATCAATCCTTGTTGTAAATGTTCAGATTCCATTGTATCCAGCTGCAATTTTTCATGGTGAAACTGATGGAGAAGGAATGAATTTCGTTTTATACTTTAAACTTTCGGATAACTATTTAAAGGAGCTTCCACCACATTTTCAAGAAAGCATTCAGAGATTACTAGATGATGAGGTTGAGAAAGTTAGAGGCTACACTACTGACACGAATGTACCCTTTAGAGAACGGTTAAAGATATTGGGTCGTGTTGCGAATGTAGACGATCTTCAGTTGAATGGTGCAGAGAAAAAACTCATGAATGCTTATAACGAAAAACCTGTGCTTTCACGTCCACAGCACGAGTTCTACTCGGGTGAAAATTACTTTGAGATTGATATTGATATGCATAGATTCAGTTATATATCGCGGAAAGGATTTGAAGCATTTTTAGACAGGCTAAAGAACTGTGTTCTTGATGTTGGACTCACAATTCAGGGGAATAAACCGGAGGAGTTACCGGAGCAGATTTTGTGTTGCATCCGGTTAAATGGGATTGATTACATGAATTATCATCAGTTAGCTCTTAGTCAAGAAGTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

492

Amino Acids

55.34

Weight (kDa)

8.17

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 236 - 478 5.5e-58 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1203
Acc36I ACCTGC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 603
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 1155
AccII CGCG 1 cut(s) 1303
AciI CCGC 4 cut(s) 321, 465, 572, 1303
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 2 cut(s) 328, 979
AcuI CTGAAG 1 cut(s) 1148
AfaI GTAC 2 cut(s) 556, 1110
AfiI CCNNNNNNNGG 1 cut(s) 656
AgsI TTSAA 8 cut(s) 203, 417, 504, 521, 589, 1040, 1171, 1316
AjiI CACGTC 1 cut(s) 1226
AjnI CCWGG 1 cut(s) 721
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 1246
ApeKI GCWGC 3 cut(s) 569, 791, 941
ApoI RAATTY 2 cut(s) 328, 979
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 1047
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 2 cut(s) 968, 1262
AvaI CYCGRG 1 cut(s) 1246
AvaII GGWCC 1 cut(s) 614
BaeGI GKGCMC 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 1092, 1125
BanI GGYRCC 1 cut(s) 603
BarI GAAGNNNNNNTAC 2 cut(s) 1146, 1178
BauI CACGAG 1 cut(s) 1235
BbvI GCAGC 3 cut(s) 556, 778, 928
BccI CCATC 4 cut(s) 419, 646, 907, 959
BciT130I CCWGG 1 cut(s) 723
BciVI GTATCC 1 cut(s) 945
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 1 cut(s) 640
BfaI CTAG 2 cut(s) 543, 1061
BfuAI ACCTGC 1 cut(s) 647
BfuI GTATCC 1 cut(s) 945
BisI GCNGC 3 cut(s) 570, 792, 942
BlsI GCNGC 3 cut(s) 571, 793, 943
Bme1390I CCNGG 2 cut(s) 723, 734
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 1246
BmgBI CACGTC 1 cut(s) 1226
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 3 cut(s) 319, 605, 669
BmrFI CCNGG 2 cut(s) 723, 734
BmsI GCATC 1 cut(s) 1422
BplI GAGNNNNNCTC 6 cut(s) 55, 87, 257, 289, 1229, 1261
BpuMI CCSGG 1 cut(s) 734
BsaAI YACGTR 1 cut(s) 859
BsaBI GATNNNNATC 2 cut(s) 144, 189
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 3 cut(s) 1381, 1393, 1416
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 616
Bse8I GATNNNNATC 2 cut(s) 144, 189
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 2 cut(s) 266, 1413
BseJI GATNNNNATC 2 cut(s) 144, 189
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 2 cut(s) 288, 677
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 1400
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 3 cut(s) 556, 778, 928
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 1303
BshNI GGYRCC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 1246
BsiSI CCGG 4 cut(s) 733, 1382, 1394, 1417
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 640
BsmI GAATGC 2 cut(s) 1047, 1201
Bso31I GGTCTC 1 cut(s) 640
BsoBI CYCGRG 1 cut(s) 1246
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 2 cut(s) 131, 1159
BspACI CCGC 4 cut(s) 321, 465, 572, 1303
BspCNI CTCAG 2 cut(s) 287, 676
BspFNI CGCG 1 cut(s) 1303
BspHI TCATGA 1 cut(s) 1191
BspLI GGNNCC 3 cut(s) 319, 605, 669
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 603
BspTNI GGTCTC 1 cut(s) 640
BsrBI CCGCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 131, 1159
BssSI CACGAG 1 cut(s) 1235
BssT1I CCWWGG 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 1235
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 508, 1125, 1343
Bst6I CTCTTC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 2 cut(s) 390, 777
BstDEI CTNAG 7 cut(s) 24, 274, 335, 384, 663, 891, 1460
BstF5I GGATG 2 cut(s) 266, 1413
BstFNI CGCG 1 cut(s) 1303
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 2 cut(s) 134, 1162
BstMAI GTCTC 1 cut(s) 640
BstMBI GATC 2 cut(s) 131, 1159
BstNI CCWGG 1 cut(s) 723
BstSCI CCNGG 2 cut(s) 721, 732
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 1303
BstV1I GCAGC 3 cut(s) 556, 778, 928
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuI GTATCC 1 cut(s) 945
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 1226
BtsCI GGATG 2 cut(s) 266, 1413
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 390, 777
CciI TCATGA 1 cut(s) 1191
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 2 cut(s) 555, 1109
CviAII CATG 4 cut(s) 177, 953, 1192, 1438
CviQI GTAC 2 cut(s) 555, 1109
DdeI CTNAG 7 cut(s) 24, 274, 335, 384, 663, 891, 1460
DpnI GATC 2 cut(s) 133, 1161
DpnII GATC 2 cut(s) 131, 1159
DraI TTTAAA 2 cut(s) 997, 1017
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 640
Eco32I GATATC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 1148
Eco88I CYCGRG 1 cut(s) 1246
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 721
EcoRV GATATC 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 1284
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 4 cut(s) 180, 956, 1195, 1441
FatI CATG 4 cut(s) 176, 952, 1191, 1437
FauI CCCGC 1 cut(s) 458
FblI GTMKAC 1 cut(s) 1155
Fnu4HI GCNGC 3 cut(s) 570, 792, 942
FokI GGATG 2 cut(s) 273, 1400
Fsp4HI GCNGC 3 cut(s) 570, 792, 942
FspBI CTAG 2 cut(s) 543, 1061
GlaI GCGC 1 cut(s) 852
GluI GCNGC 3 cut(s) 570, 792, 942
HapII CCGG 4 cut(s) 733, 1382, 1394, 1417
HhaI GCGC 1 cut(s) 853
Hin1II CATG 4 cut(s) 180, 956, 1195, 1441
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 9 cut(s) 70, 88, 185, 302, 469, 701, 925, 1287, 1359
HpaII CCGG 4 cut(s) 733, 1382, 1394, 1417
HphI GGTGA 2 cut(s) 968, 1262
Hpy166II GTNNAC 6 cut(s) 18, 256, 680, 841, 1156, 1229
Hpy188III TCNNGA 5 cut(s) 236, 1040, 1192, 1349, 1466
Hpy8I GTNNAC 6 cut(s) 18, 256, 680, 841, 1156, 1229
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 5 cut(s) 440, 522, 522, 593, 965
HpyCH4III ACNGT 3 cut(s) 508, 1125, 1343
HpyCH4IV ACGT 4 cut(s) 245, 832, 858, 1225
HpyCH4V TGCA 8 cut(s) 637, 643, 779, 794, 944, 1178, 1282, 1413
HpyF3I CTNAG 7 cut(s) 24, 274, 335, 384, 663, 891, 1460
HpySE526I ACGT 4 cut(s) 245, 832, 858, 1225
Hsp92II CATG 4 cut(s) 180, 956, 1195, 1441
HspAI GCGC 1 cut(s) 851
Kzo9I GATC 2 cut(s) 131, 1159
LmnI GCTCC 4 cut(s) 862, 900, 1021, 1396
Lsp1109I GCAGC 3 cut(s) 556, 778, 928
LweI GCATC 1 cut(s) 1422
MaeI CTAG 2 cut(s) 543, 1061
MaeII ACGT 4 cut(s) 245, 832, 858, 1225
MaeIII GTNAC 2 cut(s) 874, 1389
MalI GATC 2 cut(s) 133, 1161
MbiI CCGCTC 1 cut(s) 323
MboI GATC 2 cut(s) 131, 1159
MboII GAAGA 9 cut(s) 102, 105, 106, 109, 251, 405, 464, 778, 1154
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 9 cut(s) 328, 481, 499, 711, 945, 979, 1255, 1365, 1441
MlyI GAGTC 3 cut(s) 64, 296, 1353
MmeI TCCRAC 2 cut(s) 435, 1336
MnlI CCTC 6 cut(s) 32, 552, 558, 1063, 1079, 1378
Mph1103I ATGCAT 1 cut(s) 1284
MroXI GAANNNNTTC 1 cut(s) 1047
MseI TTAA 8 cut(s) 297, 498, 536, 576, 996, 1016, 1127, 1421
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 4 cut(s) 733, 1382, 1394, 1417
MspR9I CCNGG 2 cut(s) 723, 734
Mva1269I GAATGC 2 cut(s) 1047, 1201
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 1 cut(s) 1303
NciI CCSGG 1 cut(s) 734
NdeII GATC 2 cut(s) 131, 1159
NlaIII CATG 4 cut(s) 180, 956, 1195, 1441
NlaIV GGNNCC 3 cut(s) 319, 605, 669
NsiI ATGCAT 1 cut(s) 1284
PagI TCATGA 1 cut(s) 1191
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 135
PctI GAATGC 2 cut(s) 1047, 1201
PdmI GAANNNNTTC 1 cut(s) 1047
PfeI GAWTC 6 cut(s) 88, 185, 469, 701, 925, 1287
PkrI GCNGC 3 cut(s) 571, 793, 943
PleI GAGTC 3 cut(s) 64, 296, 1353
PpsI GAGTC 3 cut(s) 64, 296, 1353
Ppu21I YACGTR 1 cut(s) 859
PsiI TTATAA 1 cut(s) 1203
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 3 cut(s) 319, 605, 669
PspPI GGNCC 1 cut(s) 614
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 2 cut(s) 556, 1110
RsaNI GTAC 2 cut(s) 555, 1109
SaqAI TTAA 8 cut(s) 297, 498, 536, 576, 996, 1016, 1127, 1421
SatI GCNGC 3 cut(s) 570, 792, 942
Sau3AI GATC 2 cut(s) 131, 1159
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 3 cut(s) 64, 296, 1353
ScrFI CCNGG 2 cut(s) 723, 734
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 1 cut(s) 1422
SinI GGWCC 1 cut(s) 614
Sse9I AATT 9 cut(s) 328, 481, 499, 711, 945, 979, 1255, 1365, 1441
SsiI CCGC 4 cut(s) 321, 465, 572, 1303
SspMI CTAG 2 cut(s) 543, 1061
StyD4I CCNGG 2 cut(s) 721, 732
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 508, 1125, 1343
TaiI ACGT 4 cut(s) 248, 835, 861, 1228
TaqI TCGA 5 cut(s) 138, 281, 402, 684, 813
TaqII GACCGA 1 cut(s) 664
TasI AATT 9 cut(s) 328, 481, 499, 711, 945, 979, 1255, 1365, 1441
TfiI GAWTC 6 cut(s) 88, 185, 469, 701, 925, 1287
Tru1I TTAA 8 cut(s) 297, 498, 536, 576, 996, 1016, 1127, 1421
Tru9I TTAA 8 cut(s) 297, 498, 536, 576, 996, 1016, 1127, 1421
TscAI CASTG 1 cut(s) 258
TseI GCWGC 3 cut(s) 569, 791, 941
TspDTI ATGAA 8 cut(s) 186, 215, 388, 459, 941, 992, 1208, 1454
TspGWI ACGGA 3 cut(s) 144, 273, 660
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 2 cut(s) 328, 979
XmiI GTMKAC 1 cut(s) 1155
XmnI GAANNNNTTC 1 cut(s) 1047
XspI CTAG 2 cut(s) 543, 1061
Zsp2I ATGCAT 1 cut(s) 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.