Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008071

Physical Location & Seq

Genomic Coordinates Reverse (-)

4583759 .. 4585881

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGGCGTGCGTGTCAAAGCCGGAGGGGTGCGTCGGAGGGAGATTGAGCTCGTCGAAGAGGAAGAGAACCCGGAAGAGGAGGAGAGACGGGCGGGCTAAACAGACTCCGGTTCTGGCCGGTCGGTTGTCGGAAGGATCGCCGGACAAGTTTAATCGGTCCACCCCGCCTGATCGCTCCACCTTCAACAACCGCACCTTCCAAGAAAGTACTGAAGACGCATGGTTTGATCCGGTTGCAAGATTTGAGTCTGACTGCGACGAAGATTTCCATAGTGTTCAGGATGAGGTGTTATCTGTGAATGGATTTGAACGCGTATCCGTATCAAGCAATTTGTCATTGAGAGATGCCAATTGCGGAGAGTATAATATTATTGACCTGCATGCCTCATCGACTGATCAGATGCATAAGAGAGGGGATTCTGCAAACAACTCTGTCAGTGTGGTTTCTCAAAAGAGCATTAATCATGTCATGAGTGGTAATGACGTTGATGGACATTCGACAGCTGAAGCAAACCAACCTGTGTTCCTCGATGAAATCTCCTCTTCTGTGGATGAATCTTCTACCAAGGAGGAAGGAATATTGGACAATTGTGGGATTCTTCCAAGCAATTGTCTGCCTTGTCTTGCTTCAACTGTTCCCTCGGTTGAAAAGAGAAGGTCACTGATTTCTAGCCCGCCAAGTGCAAGGAAAAAGGCTGCCATAAAACTTCCCTTCAAATGGAAAGAAGGACATCCTAACGCAAGTTTATTGTCCTCAAAGATGCTTCTGCAAAGACCAATAGCAGGTTCTCAAGTTCCTTTCTGCCCTATGGAAAAGAAAATGTTTGATTCTTGGTCACATATTGAGCCAAATTCTTTCAAAGTTCGGGGACCGAATTATTTTAAGGACAGAAAGAAGGAACATGCTCCCAGCTATGCTGCATATTATCCATTTGGTCTCGACGTATTTTTATCTCAGCGAAAGATAGATCGATATAGCTCGGTTTGTCGAACTGCCTGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

336

Amino Acids

37.18

Weight (kDa)

8.8

Isoelectric Point (pI)

66.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59650
fragaria_vesca	FvH4_4g35480 FvH4_4g35480
malus_domestica	MD13G1082900.v1.1 MD16G1081800.v1.1
prunus_persica	Prupe.1G264000_v2.0.a1 Prupe.1G264000_v2.0.a1 Prupe.1G264000_v2.0.a1 Prupe.1G264000_v2.0.a1
pyrus_communis	pycom13g07150 pycom16g07070
rosa_chinensis	RchiOBHm_Chr4g0445131
rosa_laevigata	RLG00000005765
rosa_multiflora	Rmu_sc0008551.1_g000001 Rmu_sc0009010.1_g000005
rosa_roxburghii	Rroxscaffold_5G00385650
rosa_rugosa	Rorug04G0359100 Rorug04G0359200 Rorug04G0359200 Rorug04G0359200
rosa_samantha	Rh4AG420000 Rh4BG431700 Rh4CG446300
rosa_wichuraiana	Rw4G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	387, 776
AccII	CGCG	1 cut(s)	315
AciI	CCGC	5 cut(s)	94, 167, 193, 357, 677
AclWI	GGATC	2 cut(s)	145, 224
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	2 cut(s)	234, 528
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	78, 720, 785
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	6 cut(s)	187, 311, 633, 650, 718, 862
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	4 cut(s)	51, 506, 915, 981
AluI	AGCT	4 cut(s)	51, 506, 915, 981
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	81, 944
AlwI	GGATC	2 cut(s)	145, 224
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	698, 920
ApoI	RAATTY	1 cut(s)	853
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	159, 872
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	159, 872
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	685, 907
BccI	CCATC	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	81, 944
BfaI	CTAG	1 cut(s)	672
BfuAI	ACCTGC	2 cut(s)	387, 776
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	2 cut(s)	699, 921
BlsI	GCNGC	2 cut(s)	700, 922
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	2 cut(s)	159, 872
BmgT120I	GGNCC	2 cut(s)	159, 872
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	3 cut(s)	337, 393, 753
BpiI	GAAGAC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	944
BsaJI	CCNNGG	2 cut(s)	567, 642
BsaWI	WCCGGW	2 cut(s)	109, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 720, 785
Bse118I	RCCGGY	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	973
BseDI	CCNNGG	2 cut(s)	567, 642
BseGI	GGATG	3 cut(s)	289, 559, 733
BseLI	CCNNNNNNNGG	3 cut(s)	78, 720, 785
BseMII	CTCAG	1 cut(s)	971
BseRI	GAGGAG	3 cut(s)	94, 97, 532
BseXI	GCAGC	2 cut(s)	685, 907
BseYI	CCCAGC	1 cut(s)	911
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	973
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	6 cut(s)	23, 73, 110, 120, 143, 233
BslFI	GGGAC	1 cut(s)	885
BslI	CCNNNNNNNGG	3 cut(s)	78, 720, 785
BsmAI	GTCTC	2 cut(s)	81, 944
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	885
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	944
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	137, 172, 229, 397, 970
BspACI	CCGC	5 cut(s)	94, 167, 193, 357, 677
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	970
BspDI	ATCGAT	1 cut(s)	973
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	873
BspMI	ACCTGC	2 cut(s)	387, 776
BspPI	GGATC	2 cut(s)	145, 224
BspTNI	GGTCTC	1 cut(s)	944
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	567, 642
BssMI	GATC	5 cut(s)	137, 172, 229, 397, 970
BssT1I	CCWWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	4 cut(s)	53, 59, 71, 550
BstC8I	GCNNGC	4 cut(s)	10, 96, 384, 677
BstDEI	CTNAG	1 cut(s)	957
BstF5I	GGATG	3 cut(s)	289, 559, 733
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	5 cut(s)	140, 175, 232, 400, 973
BstMAI	GTCTC	2 cut(s)	81, 944
BstMBI	GATC	5 cut(s)	137, 172, 229, 397, 970
BstMCI	CGRYCG	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	386, 908
BstSCI	CCNGG	1 cut(s)	71
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	685, 907
BstV2I	GAAGAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	973
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	973
BtsCI	GGATG	3 cut(s)	289, 559, 733
BtsIMutI	CAGTG	2 cut(s)	445, 662
BveI	ACCTGC	2 cut(s)	387, 776
Cac8I	GCNNGC	4 cut(s)	10, 96, 384, 677
CciI	TCATGA	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	159, 872
ClaI	ATCGAT	1 cut(s)	973
CseI	GACGC	2 cut(s)	22, 227
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	5 cut(s)	222, 383, 467, 472, 905
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	957
DpnI	GATC	5 cut(s)	139, 174, 231, 399, 972
DpnII	GATC	5 cut(s)	137, 172, 229, 397, 970
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	4 cut(s)	53, 59, 71, 550
EarI	CTCTTC	4 cut(s)	53, 59, 71, 550
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	944
Eco47I	GGWCC	2 cut(s)	159, 872
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	234, 528
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	567
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	5 cut(s)	225, 386, 470, 475, 908
FaqI	GGGAC	1 cut(s)	885
FatI	CATG	5 cut(s)	221, 382, 466, 471, 904
FauI	CCCGC	3 cut(s)	87, 174, 684
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	699, 921
FokI	GGATG	3 cut(s)	296, 566, 720
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	699, 921
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	2 cut(s)	699, 921
GsaI	CCCAGC	1 cut(s)	915
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	6 cut(s)	23, 73, 110, 120, 143, 233
HgaI	GACGC	2 cut(s)	22, 227
Hin1II	CATG	5 cut(s)	225, 386, 470, 475, 908
HinfI	GANTC	6 cut(s)	106, 248, 419, 557, 598, 830
HpaII	CCGG	6 cut(s)	23, 73, 110, 120, 143, 233
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	38, 133, 253, 402
Hpy188III	TCNNGA	3 cut(s)	281, 472, 941
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	4 cut(s)	38, 58, 263, 947
HpyAV	CCTTC	8 cut(s)	128, 193, 208, 569, 651, 722, 724, 892
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	2 cut(s)	486, 945
HpyCH4V	TGCA	7 cut(s)	239, 382, 406, 425, 686, 772, 923
HpyF3I	CTNAG	1 cut(s)	957
HpySE526I	ACGT	2 cut(s)	486, 945
Hsp92II	CATG	5 cut(s)	225, 386, 470, 475, 908
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	137, 172, 229, 397, 970
LmnI	GCTCC	2 cut(s)	182, 913
Lsp1109I	GCAGC	2 cut(s)	685, 907
LweI	GCATC	3 cut(s)	337, 393, 753
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	486, 945
MaeIII	GTNAC	2 cut(s)	660, 837
MalI	GATC	5 cut(s)	139, 174, 231, 399, 972
MboI	GATC	5 cut(s)	137, 172, 229, 397, 970
MboII	GAAGA	8 cut(s)	70, 76, 88, 227, 275, 537, 552, 593
MfeI	CAATTG	3 cut(s)	352, 589, 610
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	6 cut(s)	331, 352, 589, 610, 853, 877
MluI	ACGCGT	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	100, 257
MmeI	TCCRAC	2 cut(s)	16, 111
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	4 cut(s)	153, 462, 885, 1006
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	6 cut(s)	23, 73, 110, 120, 143, 233
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	3 cut(s)	352, 589, 610
MvnI	CGCG	1 cut(s)	315
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	5 cut(s)	137, 172, 229, 397, 970
NlaIII	CATG	5 cut(s)	225, 386, 470, 475, 908
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	2 cut(s)	660, 837
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	2 cut(s)	386, 908
PaeI	GCATGC	1 cut(s)	386
PagI	TCATGA	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	419, 557, 598, 830
PkrI	GCNGC	2 cut(s)	700, 922
PleI	GAGTC	2 cut(s)	100, 256
PpsI	GAGTC	2 cut(s)	100, 256
PshBI	ATTAAT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	911
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	2 cut(s)	159, 872
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	153, 462, 885, 1006
SatI	GCNGC	2 cut(s)	699, 921
Sau3AI	GATC	5 cut(s)	137, 172, 229, 397, 970
Sau96I	GGNCC	2 cut(s)	159, 872
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	2 cut(s)	100, 257
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	3 cut(s)	337, 393, 753
SinI	GGWCC	2 cut(s)	159, 872
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	6 cut(s)	331, 352, 589, 610, 853, 877
SsiI	CCGC	5 cut(s)	94, 167, 193, 357, 677
SspI	AATATT	2 cut(s)	370, 582
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	2 cut(s)	489, 948
TaqI	TCGA	7 cut(s)	56, 392, 500, 531, 942, 973, 991
TaqII	GACCGA	2 cut(s)	147, 889
TasI	AATT	6 cut(s)	331, 352, 589, 610, 853, 877
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	4 cut(s)	419, 557, 598, 830
Tru1I	TTAA	4 cut(s)	153, 462, 885, 1006
Tru9I	TTAA	4 cut(s)	153, 462, 885, 1006
TscAI	CASTG	2 cut(s)	445, 669
TseFI	GTSAC	2 cut(s)	660, 837
TseI	GCWGC	2 cut(s)	698, 920
Tsp45I	GTSAC	2 cut(s)	660, 837
TspDTI	ATGAA	2 cut(s)	549, 570
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	445, 669
VpaK11BI	GGWCC	2 cut(s)	159, 872
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	2 cut(s)	386, 908
XspI	CTAG	1 cut(s)	672
ZrmI	AGTACT	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.