Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009010.1

Orthogroup ID

OG0008071

Physical Location & Seq

Genomic Coordinates Reverse (-)

8334 .. 11496

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009010.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

atgtgggaactcattttctctgacaaactaggcaggctccggtggaattttcttttcaagcattctatttctcaaataacgtgttaccgtaaacttctttatgccattgcctcctgtaactgttataactgttatgcatccacagaaagtactgaagaagcatggtttgatccggttgcaatattggaatctgactgtgatgaagattacctaagtgttcatgatgagatttcatctctaaatggttttgaacgtgcttctgtatcaagtacttcatctgcaaaagatgccaattatggggattatattattagcgatgtccatggccctacaatggagcagatgcataaagcaggggatgtatcaccagaaaattctgcaaactctgtcactgtggttgtgcaaaagggcgacagacaagtatttaatgacggtgattcccaagctaaatgtcatggtcattcaacaaccgaagcaaatcaacctgtattccttgatgaaatctcctcctctgtggatgaaagttcttccaaggaggaaggtatattggataattgtgggattcttccaagcaactgtctgccttgtcttgtttcaactgaatcctcggatggaaagagacgctcactaagttatagtccaccaagtgcaaggaagagggctgccataaaacttcccttcaaatggaaagaacctgccaatgcaagtttattttcatcaaagatgattctagaaagaccaatagcaggttcccaagttcctttttgccctatagaaaagaacatgttcgattcttggtcacaaattgagccacgtactttcaaaattcggggagtgaactatcttagggacaagaagaaggaatttgctgcgaactatgctgcatattatccatttggtcttgacgtatttttatctcagcgaaaagtaaatcatatagctcggtttgtgaaactccctgctgctagttcttctggaaatctgcctgctattcttgttgtaaatgtacaggtaccattgtatcccgctgcaatttttcagggtgagactgatggagaaggaatgaattttgttttgtactttaagcttaatgagtcatacgcaaaagaacttccacctcactttcaagaaagtatcagaaaattaattgatgatgaagtcgaaaaggttaaaggttttcctgtggatacaattgcaccctttcgagaaaggttgaaaatattgggacgtgttgttaatgtggaagatcttcatttaaatacagcagagcggaagcttatgcaggcttacaatgaaaaacctgttctttcgcgacctcagcatgagttctacttgggagaaaactaccttgagattgacttggatatgcacagatttagttatatatctaggaaagggtttgaaacattcctagatagactgaagatctgcatcttggatgtcggcctcacaattcaggggaacaaacccgaagagttgccagagcagatcttatgttgtatacggttgaatcgaattgactacatgaactacaatcaactggggttgacccaagatcccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

521

Amino Acids

59.02

Weight (kDa)

5.54

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59650
fragaria_vesca	FvH4_4g35480 FvH4_4g35480
malus_domestica	MD13G1082900.v1.1 MD16G1081800.v1.1
prunus_persica	Prupe.1G264000_v2.0.a1 Prupe.1G264000_v2.0.a1 Prupe.1G264000_v2.0.a1 Prupe.1G264000_v2.0.a1
pyrus_communis	pycom13g07150 pycom16g07070
rosa_chinensis	RchiOBHm_Chr4g0445131
rosa_laevigata	RLG00000005765
rosa_multiflora	Rmu_sc0008551.1_g000001 Rmu_sc0009010.1_g000005
rosa_roxburghii	Rroxscaffold_5G00385650
rosa_rugosa	Rorug04G0359100 Rorug04G0359200 Rorug04G0359200 Rorug04G0359200
rosa_samantha	Rh4AG420000 Rh4BG431700 Rh4CG446300
rosa_wichuraiana	Rw4G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
Acc36I	ACCTGC	2 cut(s)	703, 737
Acc65I	GGTACC	1 cut(s)	1012
AccB1I	GGYRCC	1 cut(s)	1012
AccBSI	CCGCTC	1 cut(s)	1270
AccI	GTMKAC	1 cut(s)	1501
AccII	CGCG	1 cut(s)	1312
AciI	CCGC	2 cut(s)	1026, 1270
AclWI	GGATC	2 cut(s)	164, 1550
AcsI	RAATTY	5 cut(s)	46, 373, 825, 863, 1066
AcuI	CTGAAG	2 cut(s)	174, 1442
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	6 cut(s)	151, 271, 817, 1008, 1014, 1079
AfiI	CCNNNNNNNGG	4 cut(s)	297, 334, 684, 746
AflIII	ACRYGT	3 cut(s)	80, 783, 1228
AjiI	CACGTC	1 cut(s)	1229
AjuI	GAANNNNNNNTTGG	2 cut(s)	733, 765
AluBI	AGCT	4 cut(s)	446, 941, 1087, 1276
AluI	AGCT	4 cut(s)	446, 941, 1087, 1276
Alw26I	GTCTC	2 cut(s)	613, 1040
AlwI	GGATC	2 cut(s)	164, 1550
AoxI	GGCC	2 cut(s)	325, 1444
ApeKI	GCWGC	5 cut(s)	662, 869, 881, 962, 1028
ApoI	RAATTY	5 cut(s)	46, 373, 825, 863, 1066
AseI	ATTAAT	1 cut(s)	1145
Asp700I	GAANNNNTTC	2 cut(s)	785, 1248
Asp718I	GGTACC	1 cut(s)	1012
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	357, 446, 1055
BaeI	ACNNNNGTAYC	4 cut(s)	1004, 1004, 1037, 1037
BanI	GGYRCC	1 cut(s)	1012
BbvCI	CCTCAGC	1 cut(s)	1317
BbvI	GCAGC	5 cut(s)	649, 856, 868, 949, 1015
BccI	CCATC	2 cut(s)	605, 1046
BciVI	GTATCC	2 cut(s)	1032, 1180
BcoDI	GTCTC	2 cut(s)	613, 1040
BfaI	CTAG	5 cut(s)	29, 731, 966, 1389, 1412
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	2 cut(s)	703, 737
BfuI	GTATCC	2 cut(s)	1032, 1180
BglII	AGATCT	3 cut(s)	1246, 1425, 1488
BisI	GCNGC	5 cut(s)	663, 870, 882, 963, 1029
BlsI	GCNGC	5 cut(s)	664, 871, 883, 964, 1030
BmcAI	AGTACT	2 cut(s)	151, 271
BmgBI	CACGTC	1 cut(s)	1229
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	3 cut(s)	38, 751, 1014
BmrI	ACTGGG	1 cut(s)	1550
BmsI	GCATC	4 cut(s)	146, 277, 333, 1440
BmuI	ACTGGG	1 cut(s)	1550
Bpu10I	CCTNAGC	1 cut(s)	1317
BpuEI	CTTGAG	1 cut(s)	1370
BsaAI	YACGTR	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	1430
BsaJI	CCNNGG	3 cut(s)	322, 531, 606
BsaWI	WCCGGW	2 cut(s)	39, 172
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 334, 684, 746
Bse1I	ACTGG	1 cut(s)	1545
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	1430
BseDI	CCNNGG	3 cut(s)	322, 531, 606
BseGI	GGATG	5 cut(s)	137, 364, 523, 616, 1444
BseJI	GATNNNNATC	1 cut(s)	1430
BseLI	CCNNNNNNNGG	4 cut(s)	297, 334, 684, 746
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	932, 1331
BseNI	ACTGG	1 cut(s)	1545
BseRI	GAGGAG	2 cut(s)	496, 499
BseXI	GCAGC	5 cut(s)	649, 856, 868, 949, 1015
Bsh1236I	CGCG	1 cut(s)	1312
BshFI	GGCC	2 cut(s)	327, 1446
BshNI	GGYRCC	1 cut(s)	1012
BsiSI	CCGG	2 cut(s)	40, 173
BslFI	GGGAC	2 cut(s)	863, 1239
BslI	CCNNNNNNNGG	4 cut(s)	297, 334, 684, 746
BsmAI	GTCTC	2 cut(s)	613, 1040
BsmBI	CGTCTC	1 cut(s)	613
BsmFI	GGGAC	2 cut(s)	863, 1239
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	327, 1446
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
Bsp19I	CCATGG	1 cut(s)	322
Bsp68I	TCGCGA	1 cut(s)	1312
BspACI	CCGC	2 cut(s)	1026, 1270
BspANI	GGCC	2 cut(s)	327, 1446
BspCNI	CTCAG	2 cut(s)	931, 1330
BspFNI	CGCG	1 cut(s)	1312
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	38, 751, 1014
BspMI	ACCTGC	2 cut(s)	703, 737
BspPI	GGATC	2 cut(s)	164, 1550
BspT107I	GGYRCC	1 cut(s)	1012
BsrBI	CCGCTC	1 cut(s)	1270
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	1 cut(s)	1545
BssECI	CCNNGG	3 cut(s)	322, 531, 606
BssMI	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
BssNAI	GTATAC	1 cut(s)	1502
BssT1I	CCWWGG	2 cut(s)	322, 531
Bst1107I	GTATAC	1 cut(s)	1502
Bst4CI	ACNGT	8 cut(s)	89, 122, 131, 197, 394, 434, 578, 1506
Bst6I	CTCTTC	2 cut(s)	650, 1467
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	1006
BstBAI	YACGTR	1 cut(s)	815
BstC8I	GCNNGC	3 cut(s)	35, 987, 1284
BstDEI	CTNAG	5 cut(s)	212, 629, 845, 918, 1317
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	5 cut(s)	137, 364, 523, 616, 1444
BstFNI	CGCG	1 cut(s)	1312
BstKTI	GATC	5 cut(s)	172, 1249, 1428, 1491, 1558
BstMAI	GTCTC	2 cut(s)	613, 1040
BstMBI	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 878, 1318
BstNSI	RCATGY	1 cut(s)	787
BstSFI	CTRYAG	1 cut(s)	771
BstUI	CGCG	1 cut(s)	1312
BstV1I	GCAGC	5 cut(s)	649, 856, 868, 949, 1015
BstX2I	RGATCY	4 cut(s)	1246, 1425, 1488, 1555
BstYI	RGATCY	4 cut(s)	1246, 1425, 1488, 1555
BstZ17I	GTATAC	1 cut(s)	1502
BsuI	GTATCC	2 cut(s)	1032, 1180
BsuRI	GGCC	2 cut(s)	327, 1446
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	1229
BtsCI	GGATG	5 cut(s)	137, 364, 523, 616, 1444
BtsIMutI	CAGTG	1 cut(s)	390
BtuMI	TCGCGA	1 cut(s)	1312
BveI	ACCTGC	2 cut(s)	703, 737
Cac8I	GCNNGC	3 cut(s)	35, 987, 1284
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	6 cut(s)	150, 270, 816, 1007, 1013, 1078
CviAII	CATG	7 cut(s)	162, 221, 323, 455, 784, 1322, 1525
CviQI	GTAC	6 cut(s)	150, 270, 816, 1007, 1013, 1078
DdeI	CTNAG	5 cut(s)	212, 629, 845, 918, 1317
DpnI	GATC	5 cut(s)	171, 1248, 1427, 1490, 1557
DpnII	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
DraI	TTTAAA	1 cut(s)	1257
DraIII	CACNNNGTG	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	650, 1467
EarI	CTCTTC	2 cut(s)	650, 1467
Eco130I	CCWWGG	2 cut(s)	322, 531
Eco57I	CTGAAG	2 cut(s)	174, 1442
EcoT14I	CCWWGG	2 cut(s)	322, 531
EcoT22I	ATGCAT	2 cut(s)	139, 348
ErhI	CCWWGG	2 cut(s)	322, 531
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	7 cut(s)	165, 224, 326, 458, 787, 1325, 1528
FalI	AAGNNNNNCTT	1 cut(s)	1545
FaqI	GGGAC	2 cut(s)	863, 1239
FatI	CATG	7 cut(s)	161, 220, 322, 454, 783, 1321, 1524
FauI	CCCGC	1 cut(s)	1033
FblI	GTMKAC	1 cut(s)	1501
Fnu4HI	GCNGC	5 cut(s)	663, 870, 882, 963, 1029
FokI	GGATG	5 cut(s)	124, 371, 530, 623, 1451
Fsp4HI	GCNGC	5 cut(s)	663, 870, 882, 963, 1029
FspBI	CTAG	5 cut(s)	29, 731, 966, 1389, 1412
GluI	GCNGC	5 cut(s)	663, 870, 882, 963, 1029
HaeIII	GGCC	2 cut(s)	327, 1446
HapII	CCGG	2 cut(s)	40, 173
HgaI	GACGC	1 cut(s)	630
Hin1II	CATG	7 cut(s)	165, 224, 326, 458, 787, 1325, 1528
HincII	GTYRAC	1 cut(s)	1548
HindII	GTYRAC	1 cut(s)	1548
HindIII	AAGCTT	2 cut(s)	1085, 1274
HinfI	GANTC	8 cut(s)	188, 437, 562, 602, 727, 791, 1094, 1510
HpaII	CCGG	2 cut(s)	40, 173
HphI	GGTGA	3 cut(s)	357, 446, 1055
Hpy166II	GTNNAC	5 cut(s)	92, 641, 838, 1502, 1548
Hpy188I	TCNGA	4 cut(s)	22, 193, 610, 1139
Hpy188III	TCNNGA	7 cut(s)	221, 731, 902, 975, 1127, 1205, 1311
Hpy8I	GTNNAC	5 cut(s)	92, 641, 838, 1502, 1548
HpyAV	CCTTC	4 cut(s)	533, 688, 853, 1052
HpyCH4III	ACNGT	8 cut(s)	89, 122, 131, 197, 394, 434, 578, 1506
HpyCH4IV	ACGT	5 cut(s)	80, 253, 814, 906, 1228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 878, 1318
HpyF3I	CTNAG	5 cut(s)	212, 629, 845, 918, 1317
HpySE526I	ACGT	5 cut(s)	80, 253, 814, 906, 1228
Hsp92II	CATG	7 cut(s)	165, 224, 326, 458, 787, 1325, 1528
KpnI	GGTACC	1 cut(s)	1016
Kzo9I	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
LmnI	GCTCC	2 cut(s)	42, 337
Lsp1109I	GCAGC	5 cut(s)	649, 856, 868, 949, 1015
LweI	GCATC	4 cut(s)	146, 277, 333, 1440
MaeI	CTAG	5 cut(s)	29, 731, 966, 1389, 1412
MaeII	ACGT	5 cut(s)	80, 253, 814, 906, 1228
MaeIII	GTNAC	4 cut(s)	83, 116, 388, 798
MalI	GATC	5 cut(s)	171, 1248, 1427, 1490, 1557
MbiI	CCGCTC	1 cut(s)	1270
MboI	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
MfeI	CAATTG	1 cut(s)	1191
MflI	RGATCY	4 cut(s)	1246, 1425, 1488, 1555
MlyI	GAGTC	1 cut(s)	1103
MnlI	CCTC	9 cut(s)	121, 517, 520, 529, 616, 651, 1128, 1326, 1457
Mph1103I	ATGCAT	2 cut(s)	139, 348
MroXI	GAANNNNTTC	2 cut(s)	785, 1248
MseI	TTAA	7 cut(s)	426, 1083, 1089, 1145, 1170, 1236, 1256
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	2 cut(s)	40, 173
MunI	CAATTG	1 cut(s)	1191
Mva1269I	GAATGC	1 cut(s)	61
MvnI	CGCG	1 cut(s)	1312
MwoI	GCNNNNNNNGC	3 cut(s)	287, 878, 1318
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
NlaIII	CATG	7 cut(s)	165, 224, 326, 458, 787, 1325, 1528
NlaIV	GGNNCC	3 cut(s)	38, 751, 1014
NmuCI	GTSAC	2 cut(s)	388, 798
NruI	TCGCGA	1 cut(s)	1312
NsiI	ATGCAT	2 cut(s)	139, 348
NspI	RCATGY	1 cut(s)	787
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	1510
PctI	GAATGC	1 cut(s)	61
PdmI	GAANNNNTTC	2 cut(s)	785, 1248
PfeI	GAWTC	7 cut(s)	188, 437, 562, 602, 727, 791, 1510
PkrI	GCNGC	5 cut(s)	664, 871, 883, 964, 1030
PleI	GAGTC	1 cut(s)	1102
PpsI	GAGTC	1 cut(s)	1102
Ppu21I	YACGTR	1 cut(s)	815
PscI	ACATGT	1 cut(s)	783
PshBI	ATTAAT	1 cut(s)	1145
PsiI	TTATAA	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	38, 751, 1014
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	4 cut(s)	1246, 1425, 1488, 1555
RruI	TCGCGA	1 cut(s)	1312
RsaI	GTAC	6 cut(s)	151, 271, 817, 1008, 1014, 1079
RsaNI	GTAC	6 cut(s)	150, 270, 816, 1007, 1013, 1078
SaqAI	TTAA	7 cut(s)	426, 1083, 1089, 1145, 1170, 1236, 1256
SatI	GCNGC	5 cut(s)	663, 870, 882, 963, 1029
Sau3AI	GATC	5 cut(s)	169, 1246, 1425, 1488, 1555
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	2 cut(s)	151, 271
SchI	GAGTC	1 cut(s)	1103
SfaNI	GCATC	4 cut(s)	146, 277, 333, 1440
SfcI	CTRYAG	1 cut(s)	771
SmiI	ATTTAAAT	1 cut(s)	1257
SmlI	CTYRAG	1 cut(s)	1349
SmoI	CTYRAG	1 cut(s)	1349
SsiI	CCGC	2 cut(s)	1026, 1270
SspI	AATATT	2 cut(s)	183, 1221
SspMI	CTAG	5 cut(s)	29, 731, 966, 1389, 1412
StyI	CCWWGG	2 cut(s)	322, 531
SwaI	ATTTAAAT	1 cut(s)	1257
TaaI	ACNGT	8 cut(s)	89, 122, 131, 197, 394, 434, 578, 1506
TaiI	ACGT	5 cut(s)	83, 256, 817, 909, 1231
TaqI	TCGA	4 cut(s)	789, 1161, 1204, 1513
TatI	WGTACW	4 cut(s)	149, 269, 1006, 1077
TfiI	GAWTC	7 cut(s)	188, 437, 562, 602, 727, 791, 1510
Tru1I	TTAA	7 cut(s)	426, 1083, 1089, 1145, 1170, 1236, 1256
Tru9I	TTAA	7 cut(s)	426, 1083, 1089, 1145, 1170, 1236, 1256
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	388, 798
TseI	GCWGC	5 cut(s)	662, 869, 881, 962, 1028
Tsp45I	GTSAC	2 cut(s)	388, 798
TspRI	CASTG	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	1145
XapI	RAATTY	5 cut(s)	46, 373, 825, 863, 1066
XbaI	TCTAGA	1 cut(s)	730
XceI	RCATGY	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	1501
XmnI	GAANNNNTTC	2 cut(s)	785, 1248
XspI	CTAG	5 cut(s)	29, 731, 966, 1389, 1412
ZrmI	AGTACT	2 cut(s)	151, 271
Zsp2I	ATGCAT	2 cut(s)	139, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.