Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010171

Physical Location & Seq

Genomic Coordinates Reverse (-)

22093353 .. 22094802

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAGCATCATCAGTACTACTCTCGTGCTTCAAATCCCATCATCAACCAAACCTTCTCCATGGCTGCAACTACTCATCTAACCAAACACTCCTCAGATTCAACTTTTCAACCCCAAAACCTCTCCTGATCTCCTCACGGAGCTGCTCACGACGATTCAGAGTCTTGTCAGAGACCATCACCGTCAAATTGGAAGAGGAGGAGAAGGATGATGGTGCAAGTGCTGTTCTTGATCCTCCTGCCGCCGTTAACACTAAGCTCTACTTCGGTAACTTGCCTTACAATGTTGACAGTGCAACTCTGGCTCAAATCATTCAAGATTTCGCTAACCCTGAGCTCGTTGAGGTTCTTTACAACAGAGATACCGGACAGAGTCGTGGATTCGCCTTCGTTACCATGAGCAATGTCGAAGATTGCAACATCATCATCGATAACCTCGATGGAACTGAGTATCTTGGTCGTGCTTTGAAAGTGAACTTTGCAGACAAACCAAAGCCTAACAAAGAACCTCTGTATCCAGAAACAGAGCACAAGCTCTTTGTTGGTAACTTATCATGGACTGTTACTTCCGAGTCATTAGCTGGAGCGTTTCGAGAATGTGGAGATGTGGTTGGGGCTAGAGTTGTGTTTGATGGAGATACAGGAAGATCACGGGGTTATGGCTTTGTATGTTACTCTTCCAAAGCAGAAATGGAAACCGCTCTTGAATCGCTTGACGGATTTGAGCTGGAGGGTCGGGCGATTCGAGTAAACCTTGCTCAAGGGAAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

28.5

Weight (kDa)

5.35

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60000 AT1G60000
fragaria_vesca	FvH4_4g04650 FvH4_4g04650
malus_domestica	MD16G1226600.v1.1
prunus_persica	Prupe.1G048800_v2.0.a1
pyrus_communis	pycom16g18970
rosa_chinensis	RchiOBHm_Chr4g0395451
rosa_laevigata	RLG00000009622
rosa_multiflora	Rmu_co8444787.1_g000001 Rmu_sc0004598.1_g000008 Rmu_sc0012715.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340390
rosa_rugosa	Rorug03G0357200
rosa_samantha	Rh4AG059900 Rh4BG058500 Rh4CG064200 Rh4DG055100
rosa_wichuraiana	Rw0G003330 Rw0G022530 Rw4G004800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	701
AciI	CCGC	2 cut(s)	243, 699
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	770
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	6 cut(s)	34, 103, 111, 317, 469, 707
AluBI	AGCT	6 cut(s)	144, 259, 337, 535, 581, 727
AluI	AGCT	6 cut(s)	144, 259, 337, 535, 581, 727
Alw21I	GWGCWC	2 cut(s)	339, 531
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	227
ApeKI	GCWGC	3 cut(s)	5, 66, 144
ApoI	RAATTY	1 cut(s)	770
AsuHPI	GGTGA	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	497, 530
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	2 cut(s)	339, 531
BbvI	GCAGC	3 cut(s)	17, 53, 131
BccI	CCATC	5 cut(s)	48, 185, 206, 434, 626
BceAI	ACGGC	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	4 cut(s)	6, 67, 145, 243
BlsI	GCNGC	4 cut(s)	7, 68, 146, 244
BmcAI	AGTACT	1 cut(s)	18
BmsI	GCATC	1 cut(s)	17
BpmI	CTGGAG	2 cut(s)	603, 749
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	744
Bsa29I	ATCGAT	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse3DI	GCAATG	1 cut(s)	409
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	3 cut(s)	109, 324, 438
BseRI	GAGGAG	4 cut(s)	83, 124, 212, 215
BseXI	GCAGC	3 cut(s)	17, 53, 131
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	339, 531
BsiSI	CCGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	339, 531
Bsp143I	GATC	3 cut(s)	129, 232, 647
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	2 cut(s)	243, 699
BspCNI	CTCAG	3 cut(s)	108, 325, 439
BspDI	ATCGAT	1 cut(s)	429
BspPI	GGATC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	129, 232, 647
BssSI	CACGAG	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	184, 293, 562
Bst6I	CTCTTC	2 cut(s)	189, 682
BstDEI	CTNAG	4 cut(s)	95, 255, 333, 447
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	132, 235, 650
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	129, 232, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	17, 53, 131
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	525
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	62, 397, 555
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	4 cut(s)	95, 255, 333, 447
DpnI	GATC	3 cut(s)	131, 234, 649
DpnII	GATC	3 cut(s)	129, 232, 647
Eam1104I	CTCTTC	2 cut(s)	189, 682
EarI	CTCTTC	2 cut(s)	189, 682
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	65, 400, 558
FaiI	YATR	5 cut(s)	63, 398, 556, 660, 670
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	3 cut(s)	61, 396, 554
Fnu4HI	GCNGC	4 cut(s)	6, 67, 145, 243
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	6, 67, 145, 243
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	4 cut(s)	6, 67, 145, 243
GsuI	CTGGAG	2 cut(s)	603, 749
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	3 cut(s)	65, 400, 558
HincII	GTYRAC	2 cut(s)	250, 289
HindII	GTYRAC	2 cut(s)	250, 289
HinfI	GANTC	8 cut(s)	99, 156, 162, 373, 381, 572, 707, 742
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	4 cut(s)	250, 289, 475, 751
Hpy188I	TCNGA	4 cut(s)	98, 161, 172, 571
Hpy188III	TCNNGA	7 cut(s)	127, 150, 230, 317, 518, 593, 704
Hpy8I	GTNNAC	4 cut(s)	250, 289, 475, 751
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	3 cut(s)	65, 199, 397
HpyCH4III	ACNGT	3 cut(s)	184, 293, 562
HpyCH4V	TGCA	5 cut(s)	69, 218, 296, 417, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	95, 255, 333, 447
Hsp92II	CATG	3 cut(s)	65, 400, 558
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	129, 232, 647
LmnI	GCTCC	2 cut(s)	141, 584
LpnPI	CCDG	9 cut(s)	140, 252, 287, 345, 379, 531, 567, 627, 713
Lsp1109I	GCAGC	3 cut(s)	17, 53, 131
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	5 cut(s)	269, 391, 545, 562, 671
MalI	GATC	3 cut(s)	131, 234, 649
MbiI	CCGCTC	1 cut(s)	701
MboI	GATC	3 cut(s)	129, 232, 647
MboII	GAAGA	4 cut(s)	206, 422, 657, 669
MhlI	GDGCHC	2 cut(s)	339, 531
MluCI	AATT	2 cut(s)	188, 770
MlyI	GAGTC	3 cut(s)	171, 382, 581
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	129, 232, 647
NlaIII	CATG	3 cut(s)	65, 400, 558
PcsI	WCGNNNNNNNCGW	2 cut(s)	435, 742
PfeI	GAWTC	5 cut(s)	99, 156, 381, 707, 742
PflFI	GACNNNGTC	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	7, 68, 146, 244
PleI	GAGTC	3 cut(s)	170, 381, 580
PpsI	GAGTC	3 cut(s)	170, 381, 580
Psp124BI	GAGCTC	1 cut(s)	339
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	6, 67, 145, 243
Sau3AI	GATC	3 cut(s)	129, 232, 647
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	3 cut(s)	171, 382, 581
SduI	GDGCHC	2 cut(s)	339, 531
SfaNI	GCATC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	759
SmoI	CTYRAG	1 cut(s)	759
Sse9I	AATT	2 cut(s)	188, 770
SsiI	CCGC	2 cut(s)	243, 699
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	184, 293, 562
TaqI	TCGA	5 cut(s)	408, 429, 438, 592, 745
TasI	AATT	2 cut(s)	188, 770
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	5 cut(s)	99, 156, 381, 707, 742
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	3 cut(s)	5, 66, 144
TspGWI	ACGGA	2 cut(s)	154, 732
TspRI	CASTG	1 cut(s)	298
Tth111I	GACNNNGTC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XspI	CTAG	1 cut(s)	618
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.