Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444787.1

Orthogroup ID

OG0010171

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1551

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444787.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggctgccaccgcagccgcagccatgagctcgtctttctctccttccatccacaccctcaaatgcatgcgctccaatcacgtgcacttagcccctcaccatgatcttcacctcagaatcacaacacctgcccgcatgctatcatcgtcgtcgtcgctatctgctcattcatgtgttatagatcagccactgctttctaggcgcgtgctgagaatatcgtgcgcttctgtggacgtggctgtgacggaggaggttgaagaagctgttgtagcggctgaggaggaaaaagagaagcaagctgaagaggaagtagtggcgccgatagctgaagcggcggccgatgaagtttccagtgaggctggtgaggttggaggtgaagtttcgactgatgagcttagtgtgaacacgaagctttactttgggaaccttccttacagtgttgacagcgcacagcttgctgggataattcaggactatgcaagtcctgaactcattgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

166

Amino Acids

17.62

Weight (kDa)

4.65

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60000 AT1G60000
fragaria_vesca	FvH4_4g04650 FvH4_4g04650
malus_domestica	MD16G1226600.v1.1
prunus_persica	Prupe.1G048800_v2.0.a1
pyrus_communis	pycom16g18970
rosa_chinensis	RchiOBHm_Chr4g0395451
rosa_laevigata	RLG00000009622
rosa_multiflora	Rmu_co8444787.1_g000001 Rmu_sc0004598.1_g000008 Rmu_sc0012715.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340390
rosa_rugosa	Rorug03G0357200
rosa_samantha	Rh4AG059900 Rh4BG058500 Rh4CG064200 Rh4DG055100
rosa_wichuraiana	Rw0G003330 Rw0G022530 Rw4G004800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	1 cut(s)	204
AciI	CCGC	6 cut(s)	12, 18, 133, 272, 332, 335
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	2 cut(s)	321, 348
AcvI	CACGTG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	257
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	7 cut(s)	30, 263, 299, 326, 394, 412, 454
AluI	AGCT	7 cut(s)	30, 263, 299, 326, 394, 412, 454
Alw21I	GWGCWC	2 cut(s)	32, 87
Alw44I	GTGCAC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	336
ApaLI	GTGCAC	1 cut(s)	83
ApeKI	GCWGC	3 cut(s)	5, 14, 20
AspLEI	GCGC	5 cut(s)	72, 204, 224, 319, 449
AsuHPI	GGTGA	4 cut(s)	89, 101, 374, 386
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	32, 87
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	26, 32
BccI	CCATC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	7 cut(s)	6, 15, 18, 21, 273, 333, 336
BlsI	GCNGC	7 cut(s)	7, 16, 19, 22, 274, 334, 337
BmgBI	CACGTC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	318, 425
Bpu10I	CCTNAGC	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bse1I	ACTGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	127, 200, 267
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	2 cut(s)	263, 293
BseSI	GKGCMC	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	26, 32
BseYI	CCCAGC	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	32, 87
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	32, 87
Bsp143I	GATC	2 cut(s)	103, 181
BspACI	CCGC	6 cut(s)	12, 18, 133, 272, 332, 335
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	3 cut(s)	126, 201, 268
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	318, 425
BspMI	ACCTGC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	103, 181
BssNI	GRCGYC	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	6 cut(s)	68, 133, 137, 206, 297, 456
BstDEI	CTNAG	5 cut(s)	88, 113, 209, 276, 395
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	5 cut(s)	72, 204, 224, 319, 449
BstKTI	GATC	2 cut(s)	106, 184
BstMBI	GATC	2 cut(s)	103, 181
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 14, 20, 199, 269, 323, 332, 455
BstNSI	RCATGY	2 cut(s)	70, 139
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	26, 32
BstZI	CGGCCG	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	3 cut(s)	188, 358, 442
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	6 cut(s)	68, 133, 137, 206, 297, 456
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	5 cut(s)	72, 204, 224, 319, 449
CviAII	CATG	5 cut(s)	25, 67, 101, 136, 171
DdeI	CTNAG	5 cut(s)	88, 113, 209, 276, 395
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	2 cut(s)	105, 183
DpnII	GATC	2 cut(s)	103, 181
EaeI	YGGCCR	1 cut(s)	336
EagI	CGGCCG	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	321, 348
Eco72I	CACGTG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	32
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
FaeI	CATG	5 cut(s)	28, 70, 104, 139, 174
FaiI	YATR	7 cut(s)	26, 68, 102, 137, 172, 179, 477
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	5 cut(s)	24, 66, 100, 135, 170
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 273, 333, 336
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 273, 333, 336
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	5 cut(s)	71, 203, 223, 318, 448
GluI	GCNGC	7 cut(s)	6, 15, 18, 21, 273, 333, 336
GsaI	CCCAGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	338
HhaI	GCGC	5 cut(s)	72, 204, 224, 319, 449
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	28, 70, 104, 139, 174
Hin6I	GCGC	5 cut(s)	70, 202, 222, 317, 447
HinP1I	GCGC	5 cut(s)	70, 202, 222, 317, 447
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	117
HphI	GGTGA	4 cut(s)	89, 101, 374, 386
Hpy166II	GTNNAC	4 cut(s)	85, 232, 403, 442
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	2 cut(s)	470, 485
Hpy8I	GTNNAC	4 cut(s)	85, 232, 403, 442
Hpy99I	CGWCG	3 cut(s)	151, 154, 157
HpyAV	CCTTC	2 cut(s)	54, 437
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	2 cut(s)	81, 234
HpyCH4V	TGCA	3 cut(s)	66, 85, 479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 14, 20, 199, 269, 323, 332, 455
HpyF3I	CTNAG	5 cut(s)	88, 113, 209, 276, 395
HpySE526I	ACGT	2 cut(s)	81, 234
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	5 cut(s)	28, 70, 104, 139, 174
HspAI	GCGC	5 cut(s)	70, 202, 222, 317, 447
KasI	GGCGCC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	103, 181
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	141, 345, 364, 444, 455
Lsp1109I	GCAGC	2 cut(s)	26, 32
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	81, 234
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	105, 183
MboI	GATC	2 cut(s)	103, 181
MboII	GAAGA	3 cut(s)	98, 269, 314
MhlI	GDGCHC	2 cut(s)	32, 87
MluCI	AATT	1 cut(s)	465
Mly113I	GGCGCC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	349
Mph1103I	ATGCAT	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	8 cut(s)	11, 14, 20, 199, 269, 323, 332, 455
NarI	GGCGCC	1 cut(s)	317
NdeII	GATC	2 cut(s)	103, 181
NlaIII	CATG	5 cut(s)	28, 70, 104, 139, 174
NlaIV	GGNNCC	2 cut(s)	318, 425
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	2 cut(s)	70, 139
PaeI	GCATGC	2 cut(s)	70, 139
PaqCI	CACCTGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	7 cut(s)	7, 16, 19, 22, 274, 334, 337
PluTI	GGCGCC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	82
PmlI	CACGTG	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	32
PspCI	CACGTG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	318, 425
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
PstNI	CAGNNNCTG	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	7 cut(s)	6, 15, 18, 21, 273, 333, 336
Sau3AI	GATC	2 cut(s)	103, 181
SduI	GDGCHC	2 cut(s)	32, 87
SfoI	GGCGCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	171
SphI	GCATGC	2 cut(s)	70, 139
Sse9I	AATT	1 cut(s)	465
SsiI	CCGC	6 cut(s)	12, 18, 133, 272, 332, 335
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	2 cut(s)	84, 237
TaqI	TCGA	1 cut(s)	383
TasI	AATT	1 cut(s)	465
TauI	GCSGC	4 cut(s)	20, 275, 335, 338
TfiI	GAWTC	1 cut(s)	117
TscAI	CASTG	3 cut(s)	195, 358, 442
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	5, 14, 20
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	159, 357
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	195, 358, 442
VneI	GTGCAC	1 cut(s)	83
XceI	RCATGY	2 cut(s)	70, 139
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.