Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010171

Physical Location & Seq

Genomic Coordinates Forward (+)

4052832 .. 4055373

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGCCACTGCAGCCGCAGCCATGAGCTCGTCGTTCTCTCCCTCCATCCACACCACCCTCAAATGCATGCGCTCCAACTACCACTTAGCCGCCCCTCACCACGATCTTCACCTCAGAATATCAACACCAACCCGCATGCTATCTTCATCGTCTTCGCTATCTGCTCATTCATGTGTTATTGATCAGCCACTGGTTTCTAGACGCGTGCTGAGAATATCGTGCGCTTCTGTGGACGTGGCTGTGACGGAAGAGGTTGAAGAAGAAGCTGTTGTGGCGGAAGAAGAGAAGCAGGTGGAAGAGGAAGTGGTGGCGCCGACAGCTGAAGTTTCGAGTGAGGCTGCTGTTTCGACGGATGAGCTCCCTGTGAACACGAAGCTTTACTTTGGGAACCTTCCTTACAGTGTTGACAGTGCTCAACTTGCTGGGATTATTCAGGACTATGCAAGTCCTGAACTCATTGAGGTTCTCTATCATAGGGACACTGGAAAAAGCAGAGGATTTGCATTTGTGACGATGAGCAGTGTTGAAGATTGCAATGCTGTAATTGAAAATCTTGACGGACGCGAGCTAGATAGAGATGTGGTTGTTATACATGCATACTCAAAGTCTCAAACCTTGTTAAAAAGCATCGTTGATTCTAATTTTCAGGAGTACAGTGGCCGGACCTTGAGGGTTAACTTTTCGGACAAACCTAGAGCGAAAGAACCTCTATATCCAGAAACTGAGTACAAGCTTTTTGTTGGGAATTTGTCCTGGTCAGCCACATCTGAGAGTTTGACAAAAGCTTTCCAAGAATATGGAAATGTGGTTGGAGCCAGGGTTCTATATGATGGGGAGACAGGAAGGTCCCGTGGCTATGGATTCGTATGCTTCTCAACAAAAGCGGAGATGGAAACTGCCTTACAATCTCTAGATGGAGTGGAACTAGAGGGAAGAGCAATGCGTGTAAGCTTGGCTGAAGGAAAGCGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

326

Amino Acids

35.6

Weight (kDa)

5.04

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	127 - 193	1.3e-11	RNA recognition motif
RRM_1	PF00076	246 - 315	5.1e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60000 AT1G60000
fragaria_vesca	FvH4_4g04650 FvH4_4g04650
malus_domestica	MD16G1226600.v1.1
prunus_persica	Prupe.1G048800_v2.0.a1
pyrus_communis	pycom16g18970
rosa_chinensis	RchiOBHm_Chr4g0395451
rosa_laevigata	RLG00000009622
rosa_multiflora	Rmu_co8444787.1_g000001 Rmu_sc0004598.1_g000008 Rmu_sc0012715.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340390
rosa_rugosa	Rorug03G0357200
rosa_samantha	Rh4AG059900 Rh4BG058500 Rh4CG064200 Rh4DG055100
rosa_wichuraiana	Rw0G003330 Rw0G022530 Rw4G004800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
AasI	GACNNNNNNGTC	1 cut(s)	847
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	313
AccII	CGCG	2 cut(s)	207, 567
AciI	CCGC	5 cut(s)	18, 93, 136, 278, 887
AcoI	YGGCCR	1 cut(s)	661
AcsI	RAATTY	1 cut(s)	748
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	656, 731
AfeI	AGCGCT	1 cut(s)	971
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	260, 530, 551
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	755, 818
AloI	GAACNNNNNNTCC	2 cut(s)	807, 839
AluBI	AGCT	9 cut(s)	30, 269, 323, 361, 379, 571, 736, 788, 954
AluI	AGCT	9 cut(s)	30, 269, 323, 361, 379, 571, 736, 788, 954
Alw21I	GWGCWC	3 cut(s)	32, 363, 418
Alw26I	GTCTC	2 cut(s)	615, 833
AlwNI	CAGNNNCTG	2 cut(s)	193, 725
Aor51HI	AGCGCT	1 cut(s)	971
AoxI	GGCC	1 cut(s)	661
ApeKI	GCWGC	4 cut(s)	5, 14, 20, 341
ApoI	RAATTY	1 cut(s)	748
AspLEI	GCGC	4 cut(s)	75, 227, 316, 972
AspS9I	GGNCC	2 cut(s)	666, 849
AsuHPI	GGTGA	2 cut(s)	92, 104
AvaII	GGWCC	2 cut(s)	666, 849
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	32, 363
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	3 cut(s)	32, 363, 418
BbvI	GCAGC	3 cut(s)	26, 32, 328
BccI	CCATC	4 cut(s)	56, 827, 886, 911
BciT130I	CCWGG	2 cut(s)	757, 820
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	615, 833
BfaI	CTAG	5 cut(s)	201, 572, 696, 914, 929
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	2 cut(s)	317, 973
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	6 cut(s)	6, 15, 18, 21, 93, 342
BlsI	GCNGC	6 cut(s)	7, 16, 19, 22, 94, 343
Bme1390I	CCNGG	2 cut(s)	757, 820
Bme18I	GGWCC	2 cut(s)	666, 849
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	666, 849
BmiI	GGNNCC	4 cut(s)	315, 392, 817, 851
BmrFI	CCNGG	2 cut(s)	757, 820
BmsI	GCATC	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	819, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bse1I	ACTGG	2 cut(s)	198, 490
Bse3DI	GCAATG	2 cut(s)	544, 948
BseBI	CCWGG	2 cut(s)	757, 820
BseDI	CCNNGG	2 cut(s)	819, 853
BseGI	GGATG	2 cut(s)	48, 361
BseMI	GCAATG	2 cut(s)	544, 948
BseMII	CTCAG	4 cut(s)	130, 203, 717, 762
BseNI	ACTGG	2 cut(s)	198, 490
BseXI	GCAGC	3 cut(s)	26, 32, 328
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	207, 567
BshFI	GGCC	1 cut(s)	663
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	3 cut(s)	32, 363, 418
BsiSI	CCGG	1 cut(s)	664
BslFI	GGGAC	2 cut(s)	494, 835
BsmAI	GTCTC	2 cut(s)	615, 833
BsmFI	GGGAC	2 cut(s)	494, 835
BsnI	GGCC	1 cut(s)	663
Bsp1286I	GDGCHC	3 cut(s)	32, 363, 418
Bsp143I	GATC	2 cut(s)	106, 184
BspACI	CCGC	5 cut(s)	18, 93, 136, 278, 887
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	4 cut(s)	129, 204, 718, 763
BspFNI	CGCG	2 cut(s)	207, 567
BspLI	GGNNCC	4 cut(s)	315, 392, 817, 851
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	283
BspQI	GCTCTTC	1 cut(s)	931
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	544, 948
BsrI	ACTGG	2 cut(s)	198, 490
BssECI	CCNNGG	2 cut(s)	819, 853
BssMI	GATC	2 cut(s)	106, 184
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	757, 820
Bst4CI	ACNGT	3 cut(s)	404, 413, 659
Bst6I	CTCTTC	4 cut(s)	246, 279, 294, 931
BstACI	GRCGYC	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	71, 140, 209, 569
BstDEI	CTNAG	5 cut(s)	88, 116, 212, 726, 771
BstDSI	CCRYGG	1 cut(s)	853
BstF5I	GGATG	2 cut(s)	48, 361
BstFNI	CGCG	2 cut(s)	207, 567
BstH2I	RGCGCY	2 cut(s)	317, 973
BstHHI	GCGC	4 cut(s)	75, 227, 316, 972
BstKTI	GATC	2 cut(s)	109, 187
BstMAI	GTCTC	2 cut(s)	615, 833
BstMBI	GATC	2 cut(s)	106, 184
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 14, 20, 275, 320, 422
BstNI	CCWGG	2 cut(s)	757, 820
BstNSI	RCATGY	3 cut(s)	73, 142, 599
BstSCI	CCNGG	2 cut(s)	755, 818
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	207, 567
BstV1I	GCAGC	3 cut(s)	26, 32, 328
BstV2I	GAAGAC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	800
BsuRI	GGCC	1 cut(s)	663
BtgI	CCRYGG	1 cut(s)	853
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	48, 361
BtsI	GCAGTG	2 cut(s)	9, 529
BtsIMutI	CAGTG	7 cut(s)	9, 191, 409, 418, 483, 529, 664
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	4 cut(s)	71, 140, 209, 569
CaiI	CAGNNNCTG	2 cut(s)	193, 725
CfoI	GCGC	4 cut(s)	75, 227, 316, 972
Cfr13I	GGNCC	2 cut(s)	666, 849
CseI	GACGC	2 cut(s)	213, 573
Csp6I	GTAC	2 cut(s)	655, 730
CviAII	CATG	5 cut(s)	25, 70, 139, 174, 596
CviQI	GTAC	2 cut(s)	655, 730
DdeI	CTNAG	5 cut(s)	88, 116, 212, 726, 771
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	2 cut(s)	108, 186
DpnII	GATC	2 cut(s)	106, 184
DrdI	GACNNNNNNGTC	1 cut(s)	847
DseDI	GACNNNNNNGTC	1 cut(s)	847
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	4 cut(s)	246, 279, 294, 931
EarI	CTCTTC	4 cut(s)	246, 279, 294, 931
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	30, 361
Eco24I	GRGCYC	2 cut(s)	32, 363
Eco47I	GGWCC	2 cut(s)	666, 849
Eco47III	AGCGCT	1 cut(s)	971
Eco53kI	GAGCTC	2 cut(s)	30, 361
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	2 cut(s)	30, 361
EcoO109I	RGGNCCY	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	755, 818
EcoT22I	ATGCAT	2 cut(s)	71, 601
EcoT38I	GRGCYC	2 cut(s)	32, 363
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
FaeI	CATG	5 cut(s)	28, 73, 142, 177, 599
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	2 cut(s)	494, 835
FatI	CATG	5 cut(s)	24, 69, 138, 173, 595
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	6 cut(s)	6, 15, 18, 21, 93, 342
FokI	GGATG	2 cut(s)	35, 368
FriOI	GRGCYC	2 cut(s)	32, 363
Fsp4HI	GCNGC	6 cut(s)	6, 15, 18, 21, 93, 342
FspBI	CTAG	5 cut(s)	201, 572, 696, 914, 929
GlaI	GCGC	4 cut(s)	74, 226, 315, 971
GluI	GCNGC	6 cut(s)	6, 15, 18, 21, 93, 342
GsaI	CCCAGC	1 cut(s)	429
HaeII	RGCGCY	2 cut(s)	317, 973
HaeIII	GGCC	1 cut(s)	663
HapII	CCGG	1 cut(s)	664
HgaI	GACGC	2 cut(s)	213, 573
HhaI	GCGC	4 cut(s)	75, 227, 316, 972
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	28, 73, 142, 177, 599
Hin6I	GCGC	4 cut(s)	73, 225, 314, 970
HinP1I	GCGC	4 cut(s)	73, 225, 314, 970
HincII	GTYRAC	2 cut(s)	409, 679
HindII	GTYRAC	2 cut(s)	409, 679
HindIII	AAGCTT	4 cut(s)	377, 734, 786, 952
HinfI	GANTC	2 cut(s)	638, 864
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	2 cut(s)	92, 104
Hpy166II	GTNNAC	4 cut(s)	235, 370, 409, 679
Hpy188I	TCNGA	3 cut(s)	119, 688, 772
Hpy188III	TCNNGA	7 cut(s)	201, 437, 452, 557, 650, 719, 914
Hpy8I	GTNNAC	4 cut(s)	235, 370, 409, 679
Hpy99I	CGWCG	2 cut(s)	37, 355
HpyAV	CCTTC	3 cut(s)	404, 840, 956
HpyCH4III	ACNGT	3 cut(s)	404, 413, 659
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	14, 69, 446, 506, 537, 599
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 14, 20, 275, 320, 422
HpyF3I	CTNAG	5 cut(s)	88, 116, 212, 726, 771
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	5 cut(s)	28, 73, 142, 177, 599
HspAI	GCGC	4 cut(s)	73, 225, 314, 970
KasI	GGCGCC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	2 cut(s)	106, 184
LguI	GCTCTTC	1 cut(s)	931
LmnI	GCTCC	3 cut(s)	80, 366, 815
Lsp1109I	GCAGC	3 cut(s)	26, 32, 328
LweI	GCATC	1 cut(s)	639
MaeI	CTAG	5 cut(s)	201, 572, 696, 914, 929
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	244, 511
MalI	GATC	2 cut(s)	108, 186
MboI	GATC	2 cut(s)	106, 184
MhlI	GDGCHC	3 cut(s)	32, 363, 418
MluCI	AATT	3 cut(s)	546, 643, 748
MluI	ACGCGT	1 cut(s)	205
Mly113I	GGCGCC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	102, 793
Mph1103I	ATGCAT	2 cut(s)	71, 601
MseI	TTAA	2 cut(s)	623, 678
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	2 cut(s)	757, 820
MvaI	CCWGG	2 cut(s)	757, 820
MvnI	CGCG	2 cut(s)	207, 567
MwoI	GCNNNNNNNGC	6 cut(s)	11, 14, 20, 275, 320, 422
NarI	GGCGCC	1 cut(s)	314
NdeII	GATC	2 cut(s)	106, 184
NlaIII	CATG	5 cut(s)	28, 73, 142, 177, 599
NlaIV	GGNNCC	4 cut(s)	315, 392, 817, 851
NmuCI	GTSAC	2 cut(s)	244, 511
NsiI	ATGCAT	2 cut(s)	71, 601
NspI	RCATGY	3 cut(s)	73, 142, 599
PaeI	GCATGC	2 cut(s)	73, 142
PaqCI	CACCTGC	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	931
PfeI	GAWTC	2 cut(s)	638, 864
PkrI	GCNGC	6 cut(s)	7, 16, 19, 22, 94, 343
PluTI	GGCGCC	1 cut(s)	317
PpuMI	RGGWCCY	1 cut(s)	849
Psp124BI	GAGCTC	2 cut(s)	32, 363
Psp5II	RGGWCCY	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	755, 818
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	2 cut(s)	755, 818
PspN4I	GGNNCC	4 cut(s)	315, 392, 817, 851
PspPI	GGNCC	2 cut(s)	666, 849
PspPPI	RGGWCCY	1 cut(s)	849
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	193, 725
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	656, 731
RsaNI	GTAC	2 cut(s)	655, 730
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	2 cut(s)	32, 363
SapI	GCTCTTC	1 cut(s)	931
SaqAI	TTAA	2 cut(s)	623, 678
SatI	GCNGC	6 cut(s)	6, 15, 18, 21, 93, 342
Sau3AI	GATC	2 cut(s)	106, 184
Sau96I	GGNCC	2 cut(s)	666, 849
ScrFI	CCNGG	2 cut(s)	757, 820
SduI	GDGCHC	3 cut(s)	32, 363, 418
SfaNI	GCATC	1 cut(s)	639
SfcI	CTRYAG	1 cut(s)	12
SfoI	GGCGCC	1 cut(s)	315
SinI	GGWCC	2 cut(s)	666, 849
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
SphI	GCATGC	2 cut(s)	73, 142
Sse9I	AATT	3 cut(s)	546, 643, 748
SsiI	CCGC	5 cut(s)	18, 93, 136, 278, 887
SspDI	GGCGCC	1 cut(s)	313
SspMI	CTAG	5 cut(s)	201, 572, 696, 914, 929
SstI	GAGCTC	2 cut(s)	32, 363
StyD4I	CCNGG	2 cut(s)	755, 818
TaaI	ACNGT	3 cut(s)	404, 413, 659
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	332, 350
TasI	AATT	3 cut(s)	546, 643, 748
TatI	WGTACW	2 cut(s)	654, 729
TauI	GCSGC	2 cut(s)	20, 95
TfiI	GAWTC	2 cut(s)	638, 864
Tru1I	TTAA	2 cut(s)	623, 678
Tru9I	TTAA	2 cut(s)	623, 678
TscAI	CASTG	7 cut(s)	16, 198, 409, 418, 490, 529, 664
TseFI	GTSAC	2 cut(s)	244, 511
TseI	GCWGC	4 cut(s)	5, 14, 20, 341
Tsp45I	GTSAC	2 cut(s)	244, 511
TspDTI	ATGAA	2 cut(s)	138, 162
TspGWI	ACGGA	3 cut(s)	263, 368, 576
TspRI	CASTG	7 cut(s)	16, 198, 409, 418, 490, 529, 664
VpaK11BI	GGWCC	2 cut(s)	666, 849
XapI	RAATTY	1 cut(s)	748
XbaI	TCTAGA	2 cut(s)	200, 913
XceI	RCATGY	3 cut(s)	73, 142, 599
XspI	CTAG	5 cut(s)	201, 572, 696, 914, 929
Zsp2I	ATGCAT	2 cut(s)	71, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.