Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010171

Physical Location & Seq

Genomic Coordinates Forward (+)

22976670 .. 22978859

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1226600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGCCGCCGCAGCTGCAGCCATGAGCTCATCTTTCTCCCCCTCCATCTACACCGTCAAATGCATTCGTTCATCATCCAATCATTCATCCCCCGACCATCTACACCTTAAAATGTCACCAAATCGCATGCCATCACCGTCATCGCTATCACACTCTTTTGCTATAGAGCCACTACTTTCCATTAGTAGTATCGGGACCTCGAATAAGTTTCGGGTGCTGAGGATAACAACTACTTGTGTTGCTCAAGAAGGGGTGGCAGTGACTGATGAGGTTGAAGTTGAGCAAGTGGTATTGGCCGAGGAGAAGGAGGAGAAGCAAGCAGAGGAAAAAGTAGTTGCCGCGGTGGAAGAAGTAGGAGGAGGAGGAGGAGAGGCGGCAGCTGGTGAAGTTTCAGGTGAGGAGGAGGTTGCTGTGAACACAAAGCTTTACTTTGGTAATCTTCCTTATAGTGTGGACAGTGCACAGCTTGCTGGGATTATTCAAGACTTTGCTAGTCCTGAGCTCATTGAGGTTCTGTATCATAGGGAGACTGGAAAAAGCAGAGGATTTGCATTTGTGACTATGAGTACTCCTGAAGATTGTAAAGCTGTCATTCAAAATCTTGACGGACGTGAATTTGCTGGGCGAACCTTGAGGGTGAACTTTTCGGACAGGCCGAGAGCGAAAGTACCTCTATATCCTGAAACTGAGTACAAGCTTTTCGTTGGGAATTTATCCTGGTCAGTCACATCTGAAGGTTTGACAAAAGCTTTTCAAGAATATGGGACTGTGGTTGGAGCTAGGGTTCTATATGATGGCGAGACAGGAAGGTCTCGTGGCTATGGATTCGTATGCTACTCGACGAAATCAGAAATGGACGCTGCCTTGGCATCTCTCAATGGATTTGAACTAGAAGGAAGAGCATTGCGTGTAAGCTTGGCTGAAGGAAAACGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

314

Amino Acids

33.67

Weight (kDa)

5.18

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	143 - 213	3.4e-14	RNA recognition motif
RRM_1	PF00076	234 - 304	8.8e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60000 AT1G60000
fragaria_vesca	FvH4_4g04650 FvH4_4g04650
malus_domestica	MD16G1226600.v1.1
prunus_persica	Prupe.1G048800_v2.0.a1
pyrus_communis	pycom16g18970
rosa_chinensis	RchiOBHm_Chr4g0395451
rosa_laevigata	RLG00000009622
rosa_multiflora	Rmu_co8444787.1_g000001 Rmu_sc0004598.1_g000008 Rmu_sc0012715.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340390
rosa_rugosa	Rorug03G0357200
rosa_samantha	Rh4AG059900 Rh4BG058500 Rh4CG064200 Rh4DG055100
rosa_wichuraiana	Rw0G003330 Rw0G022530 Rw4G004800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	811
AccII	CGCG	1 cut(s)	344
AciI	CCGC	5 cut(s)	9, 12, 342, 344, 377
AclI	AACGTT	1 cut(s)	934
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	617, 712
AcuI	CTGAAG	2 cut(s)	597, 756
AfaI	GTAC	3 cut(s)	571, 672, 695
AgsI	TTSAA	5 cut(s)	278, 485, 599, 758, 890
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	771, 803
Alw21I	GWGCWC	3 cut(s)	32, 466, 507
Alw26I	GTCTC	3 cut(s)	524, 797, 819
Alw44I	GTGCAC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	297, 656
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	6 cut(s)	5, 14, 17, 20, 380, 863
ApoI	RAATTY	2 cut(s)	617, 712
Asp700I	GAANNNNTTC	1 cut(s)	934
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	5 cut(s)	111, 129, 398, 410, 652
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	32, 507
BauI	CACGAG	1 cut(s)	816
Bbv12I	GWGCWC	3 cut(s)	32, 466, 507
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	4, 26, 32, 392, 850
BccI	CCATC	4 cut(s)	56, 108, 142, 791
BciT130I	CCWGG	1 cut(s)	721
BcoDI	GTCTC	3 cut(s)	524, 797, 819
BfaI	CTAG	3 cut(s)	495, 783, 893
BfmI	CTRYAG	2 cut(s)	18, 165
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	721
Bme18I	GGWCC	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	721
BmsI	GCATC	1 cut(s)	881
Bpu10I	CCTNAGC	2 cut(s)	221, 501
BpuEI	CTTGAG	2 cut(s)	231, 655
BsaI	GGTCTC	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	300, 342, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	905
BseBI	CCWGG	1 cut(s)	721
BseDI	CCNNGG	3 cut(s)	300, 342, 867
BseGI	GGATG	2 cut(s)	77, 89
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	3 cut(s)	212, 492, 681
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	8 cut(s)	317, 326, 375, 378, 381, 384, 416, 419
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	5 cut(s)	4, 26, 32, 392, 850
BseYI	CCCAGC	2 cut(s)	473, 623
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	299, 658
BsiHKAI	GWGCWC	3 cut(s)	32, 466, 507
BslFI	GGGAC	2 cut(s)	211, 781
BsmAI	GTCTC	3 cut(s)	524, 797, 819
BsmFI	GGGAC	2 cut(s)	211, 781
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	299, 658
Bso31I	GGTCTC	1 cut(s)	819
Bsp1286I	GDGCHC	3 cut(s)	32, 466, 507
BspACI	CCGC	5 cut(s)	9, 12, 342, 344, 377
BspANI	GGCC	2 cut(s)	299, 658
BspCNI	CTCAG	3 cut(s)	213, 493, 682
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	895
BspTNI	GGTCTC	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	3 cut(s)	300, 342, 867
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	867
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	721
Bst4CI	ACNGT	4 cut(s)	58, 141, 461, 772
Bst6I	CTCTTC	1 cut(s)	895
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	131, 321, 471
BstDEI	CTNAG	3 cut(s)	221, 501, 690
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	77, 89
BstFNI	CGCG	1 cut(s)	344
BstMAI	GTCTC	3 cut(s)	524, 797, 819
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 14, 17, 20, 470, 869
BstNI	CCWGG	1 cut(s)	721
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	719
BstSFI	CTRYAG	2 cut(s)	18, 165
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	5 cut(s)	4, 26, 32, 392, 850
BsuRI	GGCC	2 cut(s)	299, 658
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	77, 89
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 466
Cac8I	GCNNGC	3 cut(s)	131, 321, 471
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	198
Cfr42I	CCGCGG	1 cut(s)	345
CseI	GACGC	1 cut(s)	869
Csp6I	GTAC	3 cut(s)	570, 671, 694
CviAII	CATG	2 cut(s)	25, 130
CviQI	GTAC	3 cut(s)	570, 671, 694
DdeI	CTNAG	3 cut(s)	221, 501, 690
DrdI	GACNNNNNNGTC	1 cut(s)	811
DseDI	GACNNNNNNGTC	1 cut(s)	811
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	895
EarI	CTCTTC	1 cut(s)	895
Ecl136II	GAGCTC	2 cut(s)	30, 505
Eco130I	CCWWGG	1 cut(s)	867
Eco24I	GRGCYC	2 cut(s)	32, 507
Eco31I	GGTCTC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	2 cut(s)	30, 505
Eco57I	CTGAAG	2 cut(s)	597, 756
EcoICRI	GAGCTC	2 cut(s)	30, 505
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	719
EcoT14I	CCWWGG	1 cut(s)	867
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	2 cut(s)	32, 507
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	2 cut(s)	28, 133
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	2 cut(s)	211, 781
FatI	CATG	2 cut(s)	24, 129
FokI	GGATG	2 cut(s)	64, 76
FriOI	GRGCYC	2 cut(s)	32, 507
FspBI	CTAG	3 cut(s)	495, 783, 893
GsaI	CCCAGC	2 cut(s)	477, 627
HaeIII	GGCC	2 cut(s)	299, 658
HgaI	GACGC	1 cut(s)	869
Hin1II	CATG	2 cut(s)	28, 133
HindIII	AAGCTT	4 cut(s)	425, 698, 750, 916
HinfI	GANTC	1 cut(s)	828
HphI	GGTGA	5 cut(s)	111, 129, 398, 410, 652
Hpy166II	GTNNAC	4 cut(s)	418, 457, 464, 643
Hpy188I	TCNGA	3 cut(s)	652, 736, 853
Hpy188III	TCNNGA	8 cut(s)	196, 248, 485, 500, 575, 605, 683, 758
Hpy8I	GTNNAC	4 cut(s)	418, 457, 464, 643
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	6 cut(s)	245, 301, 731, 804, 890, 920
HpyCH4III	ACNGT	4 cut(s)	58, 141, 461, 772
HpyCH4IV	ACGT	2 cut(s)	613, 934
HpyCH4V	TGCA	4 cut(s)	20, 66, 464, 554
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 14, 17, 20, 470, 869
HpyF3I	CTNAG	3 cut(s)	221, 501, 690
HpySE526I	ACGT	2 cut(s)	613, 934
Hsp92II	CATG	2 cut(s)	28, 133
KspI	CCGCGG	1 cut(s)	345
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	1 cut(s)	779
Lsp1109I	GCAGC	5 cut(s)	4, 26, 32, 392, 850
LweI	GCATC	1 cut(s)	881
MaeI	CTAG	3 cut(s)	495, 783, 893
MaeII	ACGT	2 cut(s)	613, 934
MaeIII	GTNAC	4 cut(s)	117, 262, 559, 727
MboII	GAAGA	4 cut(s)	362, 434, 590, 912
MhlI	GDGCHC	3 cut(s)	32, 466, 507
MluCI	AATT	2 cut(s)	617, 712
MmeI	TCCRAC	1 cut(s)	757
Mph1103I	ATGCAT	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	934
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	3 cut(s)	17, 344, 383
MspR9I	CCNGG	1 cut(s)	721
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	721
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	6 cut(s)	11, 14, 17, 20, 470, 869
NlaIII	CATG	2 cut(s)	28, 133
NlaIV	GGNNCC	1 cut(s)	199
NmeAIII	GCCGAG	2 cut(s)	325, 684
NmuCI	GTSAC	4 cut(s)	117, 262, 559, 727
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	656
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	934
PfeI	GAWTC	1 cut(s)	828
PpuMI	RGGWCCY	1 cut(s)	198
Psp124BI	GAGCTC	2 cut(s)	32, 507
Psp1406I	AACGTT	1 cut(s)	934
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	719
PspFI	CCCAGC	2 cut(s)	473, 623
PspGI	CCWGG	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	198
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	266
PvuII	CAGCTG	2 cut(s)	17, 383
RsaI	GTAC	3 cut(s)	571, 672, 695
RsaNI	GTAC	3 cut(s)	570, 671, 694
SacI	GAGCTC	2 cut(s)	32, 507
SacII	CCGCGG	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	721
SduI	GDGCHC	3 cut(s)	32, 466, 507
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	2 cut(s)	18, 165
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	246, 634
SmoI	CTYRAG	2 cut(s)	246, 634
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	2 cut(s)	617, 712
SsiI	CCGC	5 cut(s)	9, 12, 342, 344, 377
SspMI	CTAG	3 cut(s)	495, 783, 893
SstI	GAGCTC	2 cut(s)	32, 507
StyD4I	CCNGG	1 cut(s)	719
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	4 cut(s)	58, 141, 461, 772
TaiI	ACGT	2 cut(s)	616, 937
TaqI	TCGA	2 cut(s)	203, 842
TasI	AATT	2 cut(s)	617, 712
TatI	WGTACW	2 cut(s)	569, 693
TauI	GCSGC	4 cut(s)	11, 14, 344, 380
TfiI	GAWTC	1 cut(s)	828
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	267, 466
TseFI	GTSAC	4 cut(s)	117, 262, 559, 727
TseI	GCWGC	6 cut(s)	5, 14, 17, 20, 380, 863
Tsp45I	GTSAC	4 cut(s)	117, 262, 559, 727
TspDTI	ATGAA	3 cut(s)	63, 78, 927
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	2 cut(s)	267, 466
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	617, 712
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	934
XspI	CTAG	3 cut(s)	495, 783, 893
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.