Rw0G003330

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00113
OG0010171
Physical Location & Seq
Forward (+)
49008 .. 51439
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003330.1

Sequence Viewer

Length: 930 bp
ATGGCTGCCACCGCAGCCGCAGCCATGAGCTCGTCTTTCTCTCCTTCCATCCACACCCTCAAATGCATGCGCTCCAATCACGTGCACTTAGCCCCTCACCATGATCTTCACCTCAGAATCACAACACCTGCCCGCATGCTATCATCGTCGTCGTCGCTATCTGCTCATTCATGTGTTATAGATCAGCCACTGCTTTCTAGGCGCGTGCTGAGAATATCGTGCGCTTCTGTGGACGTGGCTGTGACGGAGGAGGTTGAAGAAGCTGTTGTAGCGGCTGAGGAGGAAAAAGAGAAGCAAGCTGAAGAGGAAGTAGTGGCGCCGATAGCTGAAGCGGCGGCCGATGAAGTTTCGAGTGAGGCTGGTGAGGTTGGAGGTGAAGTTTCGACGACTGATGAGCTTAGTGTGAACACGAAGCTTTACTTTGGGAACCTTCCTTACAGTGTTGACAGCGCACAGCTTGCTGGGATAATTCAGGACTATGCAAGTCCTGAACTCATTGAGGTTCTCTATCATAGGGACACCGGAAGAAGCAGAGGATTTGCATTTGTGACGATGAGCAGTGTTGAAGATTGCAATGCTGTAATTGAAAATCTTGATGGACGGGAGTACAGTGGCCGAACCTTGAGGGTTAACTTTTCGGACAAACCTAGAGCGAAAGAACCTCTATATCCAGAAACTGAGTACAAACTTTTTGTTGGGAATTTGTCCTGGTCAGCCACATCTGAGAGTTTGACAAAAGCTTTCCAAGAATATGGAAATGTGGTCGGAGCCAGGGTTCTATATGATGGGGAGACAGGAAGGTCTCGTGGCTATGGATTCGTATGCTTCTCAACAAAAGCAGAGATGGAAACTGCCTTACAATCTCTAGATGGAGTGGAACTAGAGGGAAGAGCAATGCGTGTAAGCTTGGCTGAAGGAAAGCGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05130 map05130
Pfam Domains
Protein Families
RRM_1

Protein Analysis

309

Amino Acids

33.53

Weight (kDa)

4.94

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 139 - 209 4e-13 RNA recognition motif
RRM_1 PF00076 230 - 299 4.7e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
AasI GACNNNNNNGTC 1 cut(s) 799
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 316
AccII CGCG 1 cut(s) 204
AciI CCGC 6 cut(s) 12, 18, 133, 272, 332, 335
AcoI YGGCCR 2 cut(s) 336, 613
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 2 cut(s) 321, 348
AcvI CACGTG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 2 cut(s) 608, 683
AgsI TTSAA 3 cut(s) 257, 566, 587
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 707, 770
AloI GAACNNNNNNTCC 2 cut(s) 759, 791
AluBI AGCT 9 cut(s) 30, 263, 299, 326, 397, 415, 457, 740, 906
AluI AGCT 9 cut(s) 30, 263, 299, 326, 397, 415, 457, 740, 906
Alw21I GWGCWC 2 cut(s) 32, 87
Alw26I GTCTC 2 cut(s) 785, 807
Alw44I GTGCAC 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 190, 677
AoxI GGCC 2 cut(s) 336, 613
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 5, 14, 20
ApoI RAATTY 1 cut(s) 700
Asp700I GAANNNNTTC 1 cut(s) 922
AspLEI GCGC 5 cut(s) 72, 204, 224, 319, 452
AsuHPI GGTGA 4 cut(s) 89, 101, 374, 386
BaeGI GKGCMC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 1 cut(s) 804
BbrPI CACGTG 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 32, 87
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 26, 32
BccI CCATC 5 cut(s) 56, 590, 779, 838, 863
BciT130I CCWGG 2 cut(s) 709, 772
BcoDI GTCTC 2 cut(s) 785, 807
BfaI CTAG 4 cut(s) 198, 648, 866, 881
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
BlsI GCNGC 7 cut(s) 7, 16, 19, 22, 274, 334, 337
Bme1390I CCNGG 2 cut(s) 709, 772
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 318, 428, 769
BmrFI CCNGG 2 cut(s) 709, 772
Bpu10I CCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 643
BsaAI YACGTR 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 771
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 759, 789
Bse3DI GCAATG 2 cut(s) 580, 900
BseBI CCWGG 2 cut(s) 709, 772
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 580, 900
BseMII CTCAG 5 cut(s) 127, 200, 267, 669, 714
BseRI GAGGAG 2 cut(s) 263, 293
BseSI GKGCMC 1 cut(s) 87
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 26, 32
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 338, 615
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 32, 87
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 785, 807
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 2 cut(s) 338, 615
Bso31I GGTCTC 1 cut(s) 807
Bsp1286I GDGCHC 2 cut(s) 32, 87
Bsp143I GATC 2 cut(s) 103, 181
BspACI CCGC 6 cut(s) 12, 18, 133, 272, 332, 335
BspANI GGCC 2 cut(s) 338, 615
BspCNI CTCAG 5 cut(s) 126, 201, 268, 670, 715
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 318, 428, 769
BspMI ACCTGC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 807
BsrDI GCAATG 2 cut(s) 580, 900
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 2 cut(s) 103, 181
BssNI GRCGYC 1 cut(s) 317
BssSI CACGAG 1 cut(s) 804
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 709, 772
Bst4CI ACNGT 2 cut(s) 440, 611
Bst6I CTCTTC 2 cut(s) 297, 883
BstACI GRCGYC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 6 cut(s) 68, 133, 137, 206, 297, 459
BstDEI CTNAG 7 cut(s) 88, 113, 209, 276, 398, 678, 723
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 5 cut(s) 72, 204, 224, 319, 452
BstKTI GATC 2 cut(s) 106, 184
BstMAI GTCTC 2 cut(s) 785, 807
BstMBI GATC 2 cut(s) 103, 181
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 199, 269, 323, 332, 458
BstNI CCWGG 2 cut(s) 709, 772
BstNSI RCATGY 2 cut(s) 70, 139
BstSCI CCNGG 2 cut(s) 707, 770
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 26, 32
BstXI CCANNNNNNTGG 1 cut(s) 752
BstZI CGGCCG 1 cut(s) 336
BsuRI GGCC 2 cut(s) 338, 615
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 2 cut(s) 188, 565
BtsIMutI CAGTG 4 cut(s) 188, 445, 565, 616
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 6 cut(s) 68, 133, 137, 206, 297, 459
CaiI CAGNNNCTG 2 cut(s) 190, 677
CfoI GCGC 5 cut(s) 72, 204, 224, 319, 452
Csp6I GTAC 2 cut(s) 607, 682
CviAII CATG 5 cut(s) 25, 67, 101, 136, 171
CviQI GTAC 2 cut(s) 607, 682
DdeI CTNAG 7 cut(s) 88, 113, 209, 276, 398, 678, 723
DinI GGCGCC 1 cut(s) 318
DpnI GATC 2 cut(s) 105, 183
DpnII GATC 2 cut(s) 103, 181
DrdI GACNNNNNNGTC 1 cut(s) 799
DseDI GACNNNNNNGTC 1 cut(s) 799
EaeI YGGCCR 2 cut(s) 336, 613
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 297, 883
EarI CTCTTC 2 cut(s) 297, 883
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 807
Eco52I CGGCCG 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 321, 348
Eco72I CACGTG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 707, 770
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
FaeI CATG 5 cut(s) 28, 70, 104, 139, 174
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 530
FatI CATG 5 cut(s) 24, 66, 100, 135, 170
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
FspBI CTAG 4 cut(s) 198, 648, 866, 881
GlaI GCGC 5 cut(s) 71, 203, 223, 318, 451
GluI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
GsaI CCCAGC 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 2 cut(s) 338, 615
HapII CCGG 1 cut(s) 522
HhaI GCGC 5 cut(s) 72, 204, 224, 319, 452
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 5 cut(s) 28, 70, 104, 139, 174
Hin6I GCGC 5 cut(s) 70, 202, 222, 317, 450
HinP1I GCGC 5 cut(s) 70, 202, 222, 317, 450
HincII GTYRAC 2 cut(s) 445, 631
HindII GTYRAC 2 cut(s) 445, 631
HindIII AAGCTT 3 cut(s) 413, 738, 904
HinfI GANTC 2 cut(s) 117, 816
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 1 cut(s) 522
HphI GGTGA 4 cut(s) 89, 101, 374, 386
Hpy166II GTNNAC 5 cut(s) 85, 232, 406, 445, 631
Hpy188I TCNGA 4 cut(s) 116, 640, 724, 767
Hpy188III TCNNGA 5 cut(s) 473, 488, 593, 671, 866
Hpy8I GTNNAC 5 cut(s) 85, 232, 406, 445, 631
Hpy99I CGWCG 4 cut(s) 151, 154, 157, 388
HpyAV CCTTC 4 cut(s) 54, 440, 792, 908
HpyCH4III ACNGT 2 cut(s) 440, 611
HpyCH4IV ACGT 2 cut(s) 81, 234
HpyCH4V TGCA 5 cut(s) 66, 85, 482, 542, 573
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 199, 269, 323, 332, 458
HpyF3I CTNAG 7 cut(s) 88, 113, 209, 276, 398, 678, 723
HpySE526I ACGT 2 cut(s) 81, 234
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 5 cut(s) 28, 70, 104, 139, 174
HspAI GCGC 5 cut(s) 70, 202, 222, 317, 450
KasI GGCGCC 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 631
Kzo9I GATC 2 cut(s) 103, 181
LguI GCTCTTC 1 cut(s) 883
LmnI GCTCC 2 cut(s) 77, 767
Lsp1109I GCAGC 2 cut(s) 26, 32
MaeI CTAG 4 cut(s) 198, 648, 866, 881
MaeII ACGT 2 cut(s) 81, 234
MaeIII GTNAC 2 cut(s) 241, 547
MalI GATC 2 cut(s) 105, 183
MboI GATC 2 cut(s) 103, 181
MboII GAAGA 6 cut(s) 98, 269, 314, 537, 578, 900
MhlI GDGCHC 2 cut(s) 32, 87
MluCI AATT 3 cut(s) 468, 582, 700
Mly113I GGCGCC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 349, 745
Mph1103I ATGCAT 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 922
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 2 cut(s) 709, 772
MvaI CCWGG 2 cut(s) 709, 772
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 199, 269, 323, 332, 458
NarI GGCGCC 1 cut(s) 317
NdeII GATC 2 cut(s) 103, 181
NlaIII CATG 5 cut(s) 28, 70, 104, 139, 174
NlaIV GGNNCC 3 cut(s) 318, 428, 769
NmuCI GTSAC 2 cut(s) 241, 547
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 2 cut(s) 70, 139
PaeI GCATGC 2 cut(s) 70, 139
PaqCI CACCTGC 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 883
PdmI GAANNNNTTC 1 cut(s) 922
PfeI GAWTC 2 cut(s) 117, 816
PkrI GCNGC 7 cut(s) 7, 16, 19, 22, 274, 334, 337
PluTI GGCGCC 1 cut(s) 320
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 707, 770
PspCI CACGTG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 707, 770
PspN4I GGNNCC 3 cut(s) 318, 428, 769
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PstNI CAGNNNCTG 2 cut(s) 190, 677
RsaI GTAC 2 cut(s) 608, 683
RsaNI GTAC 2 cut(s) 607, 682
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 883
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
Sau3AI GATC 2 cut(s) 103, 181
ScrFI CCNGG 2 cut(s) 709, 772
SduI GDGCHC 2 cut(s) 32, 87
SfoI GGCGCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
SphI GCATGC 2 cut(s) 70, 139
Sse9I AATT 3 cut(s) 468, 582, 700
SsiI CCGC 6 cut(s) 12, 18, 133, 272, 332, 335
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 4 cut(s) 198, 648, 866, 881
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 707, 770
TaaI ACNGT 2 cut(s) 440, 611
TaiI ACGT 2 cut(s) 84, 237
TaqI TCGA 2 cut(s) 350, 383
TasI AATT 3 cut(s) 468, 582, 700
TatI WGTACW 2 cut(s) 606, 681
TauI GCSGC 4 cut(s) 20, 275, 335, 338
TfiI GAWTC 2 cut(s) 117, 816
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 4 cut(s) 195, 445, 565, 616
TseFI GTSAC 2 cut(s) 241, 547
TseI GCWGC 3 cut(s) 5, 14, 20
Tsp45I GTSAC 2 cut(s) 241, 547
TspDTI ATGAA 3 cut(s) 159, 357, 915
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 4 cut(s) 195, 445, 565, 616
VneI GTGCAC 1 cut(s) 83
XapI RAATTY 1 cut(s) 700
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 2 cut(s) 70, 139
XmnI GAANNNNTTC 1 cut(s) 922
XspI CTAG 4 cut(s) 198, 648, 866, 881
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.